Wall clock time and date at job start Mon Mar 30 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47265 * 2 1 4 4 C 1.53003 * 109.47020 * 120.00670 * 2 1 3 5 5 C 1.52996 * 109.46994 * 184.99943 * 4 2 1 6 6 C 1.50701 * 109.47130 * 180.02562 * 5 4 2 7 7 O 1.20822 * 119.99647 * 359.97438 * 6 5 4 8 8 O 1.34228 * 119.99656 * 179.72844 * 6 5 4 9 9 N 1.46501 * 109.47112 * 240.00402 * 2 1 3 10 10 C 1.39689 * 120.00069 * 84.99695 * 9 2 1 11 11 C 1.39327 * 119.95152 * 0.02562 * 10 9 2 12 12 C 1.38477 * 120.42342 * 179.97438 * 11 10 9 13 13 C 1.37681 * 120.32790 * 359.97438 * 12 11 10 14 14 C 1.40750 * 119.89165 * 0.02562 * 13 12 11 15 15 C 1.41405 * 120.20780 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00226 * 24.32350 * 15 14 13 17 17 C 1.39933 * 119.99859 * 204.32827 * 15 14 13 18 18 N 1.30830 * 120.00174 * 17.72722 * 17 15 14 19 19 Si 1.86806 * 120.00015 * 197.72767 * 17 15 14 20 20 H 1.48503 * 109.46652 * 60.00083 * 19 17 15 21 21 H 1.48501 * 109.46973 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46872 * 300.00176 * 19 17 15 23 23 C 1.38278 * 119.94955 * 179.73063 * 10 9 2 24 24 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47045 * 300.00114 * 1 2 3 26 26 H 1.09004 * 109.47251 * 59.99648 * 1 2 3 27 27 H 1.08991 * 109.47360 * 64.99840 * 4 2 1 28 28 H 1.08992 * 109.46836 * 304.99533 * 4 2 1 29 29 H 1.08997 * 109.47480 * 59.99482 * 5 4 2 30 30 H 1.09008 * 109.46851 * 299.99846 * 5 4 2 31 31 H 0.96706 * 116.99704 * 180.27297 * 8 6 5 32 32 H 0.97003 * 119.99932 * 265.00832 * 9 2 1 33 33 H 1.08001 * 119.78599 * 359.96794 * 11 10 9 34 34 H 1.08003 * 119.83509 * 179.97438 * 12 11 10 35 35 H 1.07995 * 120.05715 * 179.97438 * 13 12 11 36 36 H 0.96993 * 120.00130 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.16210 * 359.97357 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 6 4.0672 -1.3246 2.5437 7 8 3.2857 -1.8621 3.2922 8 8 5.3831 -1.3650 2.8050 9 7 2.0183 -0.6905 -1.1962 10 6 2.1517 0.0064 -2.3995 11 6 1.8205 1.3583 -2.4607 12 6 1.9494 2.0588 -3.6483 13 6 2.4072 1.4263 -4.7823 14 6 2.7457 0.0609 -4.7358 15 6 3.2161 -0.5955 -5.8966 16 1 3.6854 -0.0268 -6.6858 17 6 3.0733 -1.9817 -6.0228 18 7 2.2212 -2.6233 -5.2652 19 14 4.0994 -2.9164 -7.2731 20 1 5.5409 -2.7304 -6.9685 21 1 3.7618 -4.3611 -7.2096 22 1 3.8106 -2.4004 -8.6353 23 6 2.6180 -0.6451 -3.5265 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.7516 -1.7716 1.2055 28 1 1.6054 -0.2619 2.1369 29 1 3.8532 0.4367 1.3573 30 1 3.9994 -1.0730 0.4258 31 1 5.6579 -1.8361 3.6036 32 1 2.2489 -1.6318 -1.1527 33 1 1.4608 1.8632 -1.5763 34 1 1.6896 3.1065 -3.6851 35 1 2.5057 1.9767 -5.7062 36 1 2.1220 -3.5842 -5.3530 37 1 2.8799 -1.6917 -3.4790 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313428645.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:31 Heat of formation + Delta-G solvation = -88.580874 kcal Electronic energy + Delta-G solvation = -19277.212313 eV Core-core repulsion = 16211.290435 eV Total energy + Delta-G solvation = -3065.921878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.35874 -38.19653 -36.52788 -35.99595 -33.60812 -32.29717 -30.20586 -29.40739 -27.01707 -25.31944 -25.06309 -21.70934 -21.15631 -20.45056 -19.56106 -18.17252 -17.29218 -16.58681 -16.26547 -15.75703 -15.12013 -14.75491 -14.45667 -13.82176 -13.54693 -13.23786 -12.91514 -12.62468 -12.60710 -12.16238 -11.75680 -11.66451 -11.57066 -11.48117 -11.18688 -11.07573 -11.01101 -10.69625 -10.63673 -10.55176 -10.31022 -9.59612 -9.41898 -9.23946 -8.75970 -7.29211 -6.71500 -6.15185 -4.29701 2.10398 2.89826 2.95349 3.09821 3.13185 3.24857 3.35941 3.98747 4.27538 4.71585 4.76528 4.92975 5.03337 5.38581 5.51909 5.58614 5.74935 5.85934 5.88852 6.00405 6.06028 6.27649 6.31190 6.38437 6.52501 6.65041 6.91042 7.13152 7.15767 7.40121 7.45744 7.77175 7.83037 7.97867 8.13014 8.19083 8.51047 8.71980 8.85727 9.03129 9.13884 10.27161 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018214 B = 0.004901 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.894119 B = 5711.775476 C = 6542.275608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.157 3.843 3 H 0.077 0.923 4 C -0.113 4.113 5 C -0.113 4.113 6 C 0.479 3.521 7 O -0.521 6.521 8 O -0.518 6.518 9 N -0.756 5.756 10 C 0.218 3.782 11 C -0.300 4.300 12 C -0.066 4.066 13 C -0.258 4.258 14 C 0.139 3.861 15 C -0.466 4.466 16 H 0.075 0.925 17 C 0.079 3.921 18 N -0.793 5.793 19 Si 0.904 3.096 20 H -0.265 1.265 21 H -0.280 1.280 22 H -0.266 1.266 23 C -0.232 4.232 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.113 0.887 31 H 0.407 0.593 32 H 0.388 0.612 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.278 0.722 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.293 1.044 11.872 12.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.051 3.949 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.151 4.151 6 C 0.322 3.678 7 O -0.410 6.410 8 O -0.330 6.330 9 N -0.390 5.390 10 C 0.119 3.881 11 C -0.323 4.323 12 C -0.085 4.085 13 C -0.279 4.279 14 C 0.136 3.864 15 C -0.496 4.496 16 H 0.093 0.907 17 C -0.139 4.139 18 N -0.418 5.418 19 Si 0.728 3.272 20 H -0.189 1.189 21 H -0.205 1.205 22 H -0.191 1.191 23 C -0.256 4.256 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.265 0.735 32 H 0.222 0.778 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.782 1.021 11.866 12.043 hybrid contribution 0.592 -1.204 -0.039 1.342 sum 2.374 -0.183 11.827 12.065 Atomic orbital electron populations 1.22273 0.96523 1.01976 1.01722 1.20643 0.93298 0.96753 0.84251 0.90551 1.21736 0.92190 1.02570 0.98655 1.21429 0.97665 1.02149 0.93818 1.23796 0.79596 0.77269 0.87123 1.90708 1.56920 1.43888 1.49491 1.84588 1.27029 1.72479 1.48889 1.44557 1.75761 1.11486 1.07157 1.17617 0.94563 0.90865 0.85048 1.19906 1.20927 0.93603 0.97831 1.20286 0.98283 0.96770 0.93191 1.20855 1.13590 0.96527 0.96895 1.17311 0.86613 0.90527 0.91922 1.19526 1.34937 0.91846 1.03259 0.90676 1.25862 0.93627 0.98177 0.96192 1.69855 1.26783 1.10030 1.35171 0.86454 0.81258 0.78195 0.81266 1.18925 1.20503 1.19102 1.20725 1.13404 1.00556 0.90910 0.92790 0.92901 0.91673 0.90776 0.90259 0.87514 0.86915 0.73514 0.77848 0.89487 0.89744 0.89506 0.91161 0.86607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.42 37.16 0.35 -1.96 16 2 C 0.16 2.22 2.27 -67.93 -0.15 2.07 16 3 H 0.08 1.10 6.47 -51.93 -0.34 0.77 16 4 C -0.11 -1.35 4.04 -26.73 -0.11 -1.46 16 5 C -0.11 -1.27 5.70 -27.88 -0.16 -1.43 16 6 C 0.48 5.58 8.33 36.01 0.30 5.88 16 7 O -0.52 -7.47 16.74 -18.75 -0.31 -7.78 16 8 O -0.52 -4.93 13.42 -39.25 -0.53 -5.46 16 9 N -0.76 -13.29 4.70 -52.22 -0.25 -13.53 16 10 C 0.22 4.82 6.63 -83.86 -0.56 4.27 16 11 C -0.30 -6.53 8.86 -39.09 -0.35 -6.88 16 12 C -0.07 -1.50 10.01 -39.70 -0.40 -1.90 16 13 C -0.26 -6.45 9.79 -38.84 -0.38 -6.83 16 14 C 0.14 3.74 5.57 -106.85 -0.60 3.15 16 15 C -0.47 -12.49 9.05 -37.74 -0.34 -12.83 16 16 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 17 C 0.08 1.99 5.14 -17.34 -0.09 1.90 16 18 N -0.79 -20.56 10.96 55.55 0.61 -19.95 16 19 Si 0.90 18.82 29.59 -169.99 -5.03 13.79 16 20 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 21 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 C -0.23 -5.91 8.53 -38.68 -0.33 -6.24 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 1.04 7.70 -51.93 -0.40 0.64 16 27 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 28 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 29 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.11 1.35 7.75 -51.92 -0.40 0.95 16 31 H 0.41 2.09 9.10 45.56 0.41 2.50 16 32 H 0.39 6.60 8.61 -40.82 -0.35 6.25 16 33 H 0.09 1.69 6.08 -52.49 -0.32 1.37 16 34 H 0.08 1.67 8.06 -52.48 -0.42 1.25 16 35 H 0.09 2.07 8.06 -52.49 -0.42 1.64 16 36 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 37 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -30.07 314.88 -7.79 -37.86 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: -4.22 Total: 12.60 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: -2.81 Total: -22.26 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.36 Total: -33.49 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.84 Total: -13.24 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.07 -7.79 -37.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313428645.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.721 kcal (2) G-P(sol) polarization free energy of solvation -30.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds