Wall clock time and date at job start Mon Mar 30 2020 06:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47265 * 2 1 4 4 C 1.53003 * 109.47020 * 120.00670 * 2 1 3 5 5 C 1.52996 * 109.46994 * 184.99943 * 4 2 1 6 6 C 1.50701 * 109.47130 * 180.02562 * 5 4 2 7 7 O 1.20822 * 119.99647 * 359.97438 * 6 5 4 8 8 O 1.34228 * 119.99656 * 179.72844 * 6 5 4 9 9 N 1.46501 * 109.47112 * 240.00402 * 2 1 3 10 10 C 1.39689 * 120.00069 * 84.99695 * 9 2 1 11 11 C 1.39327 * 119.95152 * 0.02562 * 10 9 2 12 12 C 1.38477 * 120.42342 * 179.97438 * 11 10 9 13 13 C 1.37681 * 120.32790 * 359.97438 * 12 11 10 14 14 C 1.40750 * 119.89165 * 0.02562 * 13 12 11 15 15 C 1.41405 * 120.20780 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00226 * 24.32350 * 15 14 13 17 17 C 1.39933 * 119.99859 * 204.32827 * 15 14 13 18 18 N 1.30830 * 120.00174 * 17.72722 * 17 15 14 19 19 Si 1.86806 * 120.00015 * 197.72767 * 17 15 14 20 20 H 1.48503 * 109.46652 * 60.00083 * 19 17 15 21 21 H 1.48501 * 109.46973 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.46872 * 300.00176 * 19 17 15 23 23 C 1.38278 * 119.94955 * 179.73063 * 10 9 2 24 24 H 1.09001 * 109.47372 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47045 * 300.00114 * 1 2 3 26 26 H 1.09004 * 109.47251 * 59.99648 * 1 2 3 27 27 H 1.08991 * 109.47360 * 64.99840 * 4 2 1 28 28 H 1.08992 * 109.46836 * 304.99533 * 4 2 1 29 29 H 1.08997 * 109.47480 * 59.99482 * 5 4 2 30 30 H 1.09008 * 109.46851 * 299.99846 * 5 4 2 31 31 H 0.96706 * 116.99704 * 180.27297 * 8 6 5 32 32 H 0.97003 * 119.99932 * 265.00832 * 9 2 1 33 33 H 1.08001 * 119.78599 * 359.96794 * 11 10 9 34 34 H 1.08003 * 119.83509 * 179.97438 * 12 11 10 35 35 H 1.07995 * 120.05715 * 179.97438 * 13 12 11 36 36 H 0.96993 * 120.00130 * 179.97438 * 18 17 15 37 37 H 1.08001 * 120.16210 * 359.97357 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5648 -0.6135 1.3136 6 6 4.0672 -1.3246 2.5437 7 8 3.2857 -1.8621 3.2922 8 8 5.3831 -1.3650 2.8050 9 7 2.0183 -0.6905 -1.1962 10 6 2.1517 0.0064 -2.3995 11 6 1.8205 1.3583 -2.4607 12 6 1.9494 2.0588 -3.6483 13 6 2.4072 1.4263 -4.7823 14 6 2.7457 0.0609 -4.7358 15 6 3.2161 -0.5955 -5.8966 16 1 3.6854 -0.0268 -6.6858 17 6 3.0733 -1.9817 -6.0228 18 7 2.2212 -2.6233 -5.2652 19 14 4.0994 -2.9164 -7.2731 20 1 5.5409 -2.7304 -6.9685 21 1 3.7618 -4.3611 -7.2096 22 1 3.8106 -2.4004 -8.6353 23 6 2.6180 -0.6451 -3.5265 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.7516 -1.7716 1.2055 28 1 1.6054 -0.2619 2.1369 29 1 3.8532 0.4367 1.3573 30 1 3.9994 -1.0730 0.4258 31 1 5.6579 -1.8361 3.6036 32 1 2.2489 -1.6318 -1.1527 33 1 1.4608 1.8632 -1.5763 34 1 1.6896 3.1065 -3.6851 35 1 2.5057 1.9767 -5.7062 36 1 2.1220 -3.5842 -5.3530 37 1 2.8799 -1.6917 -3.4790 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313428645.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:31 Heat of formation + Delta-G solvation = -106.815565 kcal Electronic energy + Delta-G solvation = -19278.003028 eV Core-core repulsion = 16211.290435 eV Total energy + Delta-G solvation = -3066.712593 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.27317 -39.79474 -37.82124 -37.05661 -35.40071 -33.69342 -31.46378 -31.24232 -28.63301 -27.08953 -26.20651 -23.19627 -22.52615 -21.81899 -21.04132 -19.10258 -19.03805 -17.72289 -17.41560 -17.12616 -16.57374 -16.38575 -16.09884 -15.11356 -14.68600 -14.60623 -14.30235 -14.12253 -13.90513 -13.88963 -13.28136 -12.95749 -12.84215 -12.71249 -12.55477 -12.47031 -12.37796 -12.15944 -12.10275 -11.71407 -11.59551 -11.43479 -11.21131 -11.04319 -10.45184 -9.19553 -8.59091 -7.83662 -6.28428 1.13454 1.20255 1.39186 1.39683 1.50273 1.62266 2.16052 2.24530 2.82410 2.89402 3.78949 3.91137 3.94207 4.09171 4.43219 4.44625 4.58699 4.64185 4.75808 4.83566 4.88730 4.92941 5.04363 5.10100 5.19019 5.23362 5.37887 5.42325 5.53767 5.61849 5.66436 6.01775 6.17162 6.26601 6.32913 6.63247 6.99027 7.00316 7.10601 7.13055 7.31379 8.40853 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018214 B = 0.004901 C = 0.004279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1536.894119 B = 5711.775476 C = 6542.275608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.156 3.844 3 H 0.082 0.918 4 C -0.102 4.102 5 C -0.113 4.113 6 C 0.487 3.513 7 O -0.551 6.551 8 O -0.516 6.516 9 N -0.748 5.748 10 C 0.227 3.773 11 C -0.298 4.298 12 C -0.064 4.064 13 C -0.288 4.288 14 C 0.108 3.892 15 C -0.507 4.507 16 H 0.069 0.931 17 C 0.039 3.961 18 N -0.823 5.823 19 Si 0.976 3.024 20 H -0.262 1.262 21 H -0.268 1.268 22 H -0.262 1.262 23 C -0.260 4.260 24 H 0.049 0.951 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.426 0.574 32 H 0.390 0.610 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.284 0.716 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.499 1.383 13.387 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.051 3.949 3 H 0.100 0.900 4 C -0.140 4.140 5 C -0.150 4.150 6 C 0.332 3.668 7 O -0.442 6.442 8 O -0.330 6.330 9 N -0.379 5.379 10 C 0.126 3.874 11 C -0.320 4.320 12 C -0.083 4.083 13 C -0.308 4.308 14 C 0.105 3.895 15 C -0.536 4.536 16 H 0.087 0.913 17 C -0.175 4.175 18 N -0.449 5.449 19 Si 0.797 3.203 20 H -0.186 1.186 21 H -0.193 1.193 22 H -0.186 1.186 23 C -0.285 4.285 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.085 0.915 28 H 0.113 0.887 29 H 0.141 0.859 30 H 0.122 0.878 31 H 0.288 0.712 32 H 0.224 0.776 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.995 1.362 13.430 13.646 hybrid contribution 0.501 -1.241 -0.348 1.383 sum 2.496 0.121 13.082 13.319 Atomic orbital electron populations 1.22235 0.95997 1.01880 1.02077 1.20856 0.93603 0.96919 0.83526 0.89994 1.21604 0.92738 1.01905 0.97788 1.21406 0.97143 1.03073 0.93393 1.23732 0.79909 0.76513 0.86685 1.90704 1.57745 1.45238 1.50551 1.84541 1.25786 1.72502 1.50126 1.44668 1.74814 1.11601 1.06865 1.17679 0.92719 0.91308 0.85700 1.20260 1.19746 0.93363 0.98646 1.20653 0.96723 0.98326 0.92576 1.20998 1.15471 0.96305 0.98072 1.17695 0.87402 0.91718 0.92649 1.19775 1.36830 0.93235 1.03808 0.91258 1.26654 0.94242 0.98435 0.98194 1.69914 1.27770 1.10556 1.36679 0.85353 0.79292 0.77053 0.78560 1.18602 1.19283 1.18606 1.20662 1.15753 1.00016 0.92022 0.93191 0.89938 0.93867 0.91502 0.88681 0.85899 0.87799 0.71226 0.77643 0.86433 0.86595 0.89631 0.90556 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.14 9.42 71.98 0.68 -3.46 16 2 C 0.16 4.03 2.27 44.99 0.10 4.13 16 3 H 0.08 2.08 6.47 -2.39 -0.02 2.06 16 4 C -0.10 -2.18 4.04 30.59 0.12 -2.06 16 5 C -0.11 -2.28 5.70 29.85 0.17 -2.11 16 6 C 0.49 10.35 8.33 71.24 0.59 10.94 16 7 O -0.55 -14.81 16.74 21.98 0.37 -14.44 16 8 O -0.52 -8.64 13.42 -51.40 -0.69 -9.33 16 9 N -0.75 -25.49 4.70 -319.12 -1.50 -26.99 16 10 C 0.23 9.98 6.63 38.16 0.25 10.23 16 11 C -0.30 -12.44 8.86 22.59 0.20 -12.24 16 12 C -0.06 -2.83 10.01 22.20 0.22 -2.61 16 13 C -0.29 -14.67 9.79 22.75 0.22 -14.44 16 14 C 0.11 6.02 5.57 -21.31 -0.12 5.90 16 15 C -0.51 -28.30 9.05 23.46 0.21 -28.09 16 16 H 0.07 3.77 7.91 -2.91 -0.02 3.75 16 17 C 0.04 2.04 5.14 85.25 0.44 2.48 16 18 N -0.82 -43.88 10.96 21.82 0.24 -43.64 16 19 Si 0.98 39.22 29.59 68.60 2.03 41.25 16 20 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 21 H -0.27 -10.16 7.11 99.48 0.71 -9.46 16 22 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 23 C -0.26 -13.62 8.53 22.86 0.19 -13.43 16 24 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.04 1.29 7.70 -2.39 -0.02 1.27 16 27 H 0.07 1.55 8.10 -2.39 -0.02 1.53 16 28 H 0.09 1.79 8.10 -2.39 -0.02 1.77 16 29 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.10 2.33 7.75 -2.38 -0.02 2.31 16 31 H 0.43 3.38 9.10 -74.05 -0.67 2.71 16 32 H 0.39 13.11 8.61 -92.71 -0.80 12.31 16 33 H 0.12 4.16 6.08 -2.91 -0.02 4.15 16 34 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 35 H 0.09 4.21 8.06 -2.91 -0.02 4.19 16 36 H 0.28 13.76 8.30 -92.71 -0.77 12.99 16 37 H 0.10 5.40 6.16 -2.91 -0.02 5.38 16 Total: -1.00 -66.16 314.88 3.36 -62.79 By element: Atomic # 1 Polarization: 35.49 SS G_CDS: -0.38 Total: 35.11 kcal Atomic # 6 Polarization: -48.04 SS G_CDS: 3.29 Total: -44.75 kcal Atomic # 7 Polarization: -69.37 SS G_CDS: -1.26 Total: -70.63 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.32 Total: -23.77 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -66.16 3.36 -62.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313428645.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.021 kcal (2) G-P(sol) polarization free energy of solvation -66.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds