Wall clock time and date at job start Mon Mar 30 2020 06:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47230 * 2 1 4 4 C 1.53002 * 109.46958 * 240.00682 * 2 1 3 5 5 C 1.53002 * 109.47229 * 174.99694 * 4 2 1 6 6 C 1.50704 * 109.47024 * 179.97438 * 5 4 2 7 7 O 1.20826 * 119.99921 * 359.97438 * 6 5 4 8 8 O 1.34232 * 120.00007 * 180.02562 * 6 5 4 9 9 N 1.46499 * 109.47724 * 120.00663 * 2 1 3 10 10 C 1.39687 * 119.99765 * 274.99999 * 9 2 1 11 11 C 1.39340 * 119.94901 * 359.97438 * 10 9 2 12 12 C 1.38487 * 120.42055 * 179.97438 * 11 10 9 13 13 C 1.37689 * 120.32389 * 359.97438 * 12 11 10 14 14 C 1.40750 * 119.89446 * 0.02678 * 13 12 11 15 15 C 1.41403 * 120.20835 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00082 * 24.32953 * 15 14 13 17 17 C 1.39930 * 120.00064 * 204.33431 * 15 14 13 18 18 N 1.30827 * 119.99904 * 17.74177 * 17 15 14 19 19 Si 1.86802 * 119.99791 * 197.73385 * 17 15 14 20 20 H 1.48497 * 109.47219 * 90.00452 * 19 17 15 21 21 H 1.48509 * 109.47051 * 210.00204 * 19 17 15 22 22 H 1.48498 * 109.47335 * 330.00017 * 19 17 15 23 23 C 1.38271 * 119.94876 * 179.71921 * 10 9 2 24 24 H 1.09003 * 109.46805 * 299.99521 * 1 2 3 25 25 H 1.09000 * 109.47358 * 59.99547 * 1 2 3 26 26 H 1.09000 * 109.47230 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47593 * 54.99743 * 4 2 1 28 28 H 1.09003 * 109.46844 * 294.99794 * 4 2 1 29 29 H 1.08994 * 109.47397 * 300.00051 * 5 4 2 30 30 H 1.09001 * 109.46769 * 60.00337 * 5 4 2 31 31 H 0.96698 * 117.00017 * 180.02562 * 8 6 5 32 32 H 0.96994 * 119.99993 * 94.99823 * 9 2 1 33 33 H 1.08000 * 119.79206 * 359.96209 * 11 10 9 34 34 H 1.07994 * 119.83725 * 180.02562 * 12 11 10 35 35 H 1.07996 * 120.05076 * 179.97438 * 13 12 11 36 36 H 0.96999 * 120.00135 * 180.02562 * 18 17 15 37 37 H 1.07995 * 120.16705 * 0.02798 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0671 -1.3240 -2.5442 7 8 3.2857 -1.8621 -3.2923 8 8 5.3827 -1.3601 -2.8083 9 7 2.0184 -0.6907 1.1960 10 6 2.1519 0.0060 2.3993 11 6 1.8206 1.3581 2.4607 12 6 1.9487 2.0582 3.6487 13 6 2.4046 1.4250 4.7831 14 6 2.7431 0.0596 4.7363 15 6 3.2126 -0.5972 5.8972 16 1 2.9575 -0.2148 6.8745 17 6 4.0078 -1.7426 5.7799 18 7 4.6034 -2.0121 4.6466 19 14 4.2192 -2.8866 7.2414 20 1 3.1570 -3.9240 7.2157 21 1 5.5509 -3.5400 7.1701 22 1 4.1179 -2.1055 8.5002 23 6 2.6075 -0.6483 3.5290 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6053 -0.2616 -2.1371 28 1 1.7515 -1.7714 -1.2058 29 1 3.8531 0.4371 -1.3575 30 1 3.9994 -1.0728 -0.4262 31 1 5.6569 -1.8274 -3.6092 32 1 2.2491 -1.6318 1.1524 33 1 1.4619 1.8634 1.5762 34 1 1.6888 3.1058 3.6857 35 1 2.5032 1.9753 5.7071 36 1 5.1544 -2.8062 4.5651 37 1 2.8611 -1.6971 3.4835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313428647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:34 Heat of formation + Delta-G solvation = -88.689604 kcal Electronic energy + Delta-G solvation = -19306.681220 eV Core-core repulsion = 16240.754627 eV Total energy + Delta-G solvation = -3065.926592 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.32319 -38.19592 -36.50797 -35.97687 -33.60633 -32.28440 -30.20363 -29.40766 -27.02309 -25.30995 -25.05953 -21.70472 -21.13976 -20.44085 -19.55937 -18.14088 -17.29202 -16.55065 -16.23646 -15.75670 -15.11461 -14.75091 -14.45592 -13.81076 -13.53073 -13.22358 -12.93163 -12.63486 -12.55323 -12.17546 -11.75257 -11.67562 -11.62685 -11.37682 -11.17532 -11.09059 -11.01978 -10.77073 -10.59156 -10.44626 -10.34238 -9.59831 -9.41415 -9.23963 -8.76785 -7.29422 -6.72123 -6.15302 -4.29828 2.13945 2.88025 2.99260 3.10894 3.14450 3.24600 3.35580 3.98811 4.27480 4.72686 4.78065 4.94570 5.06715 5.40189 5.53544 5.61766 5.74786 5.86033 5.88506 5.99616 6.06694 6.27061 6.30991 6.41653 6.49320 6.64450 6.90891 7.12959 7.15593 7.40080 7.45590 7.80873 7.82937 7.97683 8.12864 8.19260 8.50995 8.71847 8.85695 9.03028 9.13712 10.26722 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017827 B = 0.005089 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.242036 B = 5500.937736 C = 6523.500823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.157 3.843 3 H 0.077 0.923 4 C -0.113 4.113 5 C -0.114 4.114 6 C 0.480 3.520 7 O -0.523 6.523 8 O -0.517 6.517 9 N -0.756 5.756 10 C 0.217 3.783 11 C -0.300 4.300 12 C -0.066 4.066 13 C -0.258 4.258 14 C 0.139 3.861 15 C -0.465 4.465 16 H 0.075 0.925 17 C 0.079 3.921 18 N -0.793 5.793 19 Si 0.904 3.096 20 H -0.269 1.269 21 H -0.279 1.279 22 H -0.263 1.263 23 C -0.232 4.232 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.115 0.885 31 H 0.406 0.594 32 H 0.388 0.612 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.277 0.723 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.942 0.238 -11.033 11.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.050 3.950 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.151 4.151 6 C 0.323 3.677 7 O -0.412 6.412 8 O -0.329 6.329 9 N -0.390 5.390 10 C 0.119 3.881 11 C -0.323 4.323 12 C -0.085 4.085 13 C -0.279 4.279 14 C 0.136 3.864 15 C -0.495 4.495 16 H 0.094 0.906 17 C -0.139 4.139 18 N -0.418 5.418 19 Si 0.729 3.271 20 H -0.194 1.194 21 H -0.205 1.205 22 H -0.187 1.187 23 C -0.256 4.256 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.125 0.875 30 H 0.133 0.867 31 H 0.264 0.736 32 H 0.222 0.778 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.169 0.292 -11.093 11.158 hybrid contribution 0.508 -1.232 0.049 1.333 sum -0.661 -0.940 -11.044 11.103 Atomic orbital electron populations 1.22273 0.96569 1.01877 1.01744 1.20647 0.93200 0.96838 0.84305 0.90542 1.21731 0.92283 1.02482 0.98589 1.21433 0.97587 1.02186 0.93935 1.23797 0.79589 0.77203 0.87100 1.90702 1.56922 1.43939 1.49609 1.84595 1.27053 1.72617 1.48620 1.44553 1.75730 1.11539 1.07133 1.17619 0.94348 0.90992 0.85141 1.19912 1.20818 0.93802 0.97718 1.20290 0.98204 0.96796 0.93248 1.20858 1.14591 0.95283 0.97122 1.17320 0.86734 0.90034 0.92317 1.19565 1.27614 1.08306 0.94029 0.90636 1.25857 0.93621 0.97569 0.96826 1.69858 1.21887 1.24009 1.26073 0.86392 0.78042 0.80450 0.82253 1.19430 1.20478 1.18701 1.20730 1.12653 1.00031 0.92159 0.91701 0.92864 0.92856 0.90297 0.90825 0.87529 0.86739 0.73551 0.77846 0.89483 0.89740 0.89503 0.91244 0.86585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.23 9.42 37.15 0.35 -1.88 16 2 C 0.16 2.21 2.27 -67.93 -0.15 2.06 16 3 H 0.08 1.12 6.47 -51.93 -0.34 0.79 16 4 C -0.11 -1.36 4.04 -26.73 -0.11 -1.47 16 5 C -0.11 -1.35 5.70 -27.88 -0.16 -1.51 16 6 C 0.48 5.83 8.33 36.01 0.30 6.13 16 7 O -0.52 -7.65 16.74 -18.75 -0.31 -7.97 16 8 O -0.52 -5.24 13.42 -39.26 -0.53 -5.77 16 9 N -0.76 -13.28 4.70 -52.22 -0.25 -13.53 16 10 C 0.22 4.82 6.63 -83.86 -0.56 4.26 16 11 C -0.30 -6.53 8.86 -39.08 -0.35 -6.87 16 12 C -0.07 -1.50 10.02 -39.69 -0.40 -1.90 16 13 C -0.26 -6.44 9.79 -38.83 -0.38 -6.82 16 14 C 0.14 3.73 5.57 -106.85 -0.60 3.13 16 15 C -0.47 -12.47 9.05 -37.74 -0.34 -12.81 16 16 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 17 C 0.08 1.98 5.14 -17.35 -0.09 1.89 16 18 N -0.79 -20.37 10.95 55.55 0.61 -19.76 16 19 Si 0.90 18.82 29.59 -169.99 -5.03 13.79 16 20 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 21 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 23 C -0.23 -5.90 8.53 -38.68 -0.33 -6.23 16 24 H 0.06 0.99 7.70 -51.93 -0.40 0.59 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 28 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 29 H 0.11 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.11 1.49 7.75 -51.93 -0.40 1.08 16 31 H 0.41 2.29 9.10 45.56 0.41 2.71 16 32 H 0.39 6.60 8.61 -40.82 -0.35 6.24 16 33 H 0.09 1.69 6.08 -52.49 -0.32 1.37 16 34 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.09 2.07 8.06 -52.49 -0.42 1.64 16 36 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 37 H 0.12 3.05 6.16 -52.49 -0.32 2.73 16 LS Contribution 314.89 15.07 4.75 4.75 Total: -1.00 -29.90 314.89 -7.79 -37.69 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -4.22 Total: 12.81 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: -2.81 Total: -22.01 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: 0.36 Total: -33.29 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.84 Total: -13.73 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.90 -7.79 -37.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313428647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.002 kcal (2) G-P(sol) polarization free energy of solvation -29.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds