Wall clock time and date at job start Mon Mar 30 2020 06:52:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47230 * 2 1 4 4 C 1.53002 * 109.46958 * 240.00682 * 2 1 3 5 5 C 1.53002 * 109.47229 * 174.99694 * 4 2 1 6 6 C 1.50704 * 109.47024 * 179.97438 * 5 4 2 7 7 O 1.20826 * 119.99921 * 359.97438 * 6 5 4 8 8 O 1.34232 * 120.00007 * 180.02562 * 6 5 4 9 9 N 1.46499 * 109.47724 * 120.00663 * 2 1 3 10 10 C 1.39687 * 119.99765 * 274.99999 * 9 2 1 11 11 C 1.39340 * 119.94901 * 359.97438 * 10 9 2 12 12 C 1.38487 * 120.42055 * 179.97438 * 11 10 9 13 13 C 1.37689 * 120.32389 * 359.97438 * 12 11 10 14 14 C 1.40750 * 119.89446 * 0.02678 * 13 12 11 15 15 C 1.41403 * 120.20835 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00082 * 24.32953 * 15 14 13 17 17 C 1.39930 * 120.00064 * 204.33431 * 15 14 13 18 18 N 1.30827 * 119.99904 * 17.74177 * 17 15 14 19 19 Si 1.86802 * 119.99791 * 197.73385 * 17 15 14 20 20 H 1.48497 * 109.47219 * 90.00452 * 19 17 15 21 21 H 1.48509 * 109.47051 * 210.00204 * 19 17 15 22 22 H 1.48498 * 109.47335 * 330.00017 * 19 17 15 23 23 C 1.38271 * 119.94876 * 179.71921 * 10 9 2 24 24 H 1.09003 * 109.46805 * 299.99521 * 1 2 3 25 25 H 1.09000 * 109.47358 * 59.99547 * 1 2 3 26 26 H 1.09000 * 109.47230 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47593 * 54.99743 * 4 2 1 28 28 H 1.09003 * 109.46844 * 294.99794 * 4 2 1 29 29 H 1.08994 * 109.47397 * 300.00051 * 5 4 2 30 30 H 1.09001 * 109.46769 * 60.00337 * 5 4 2 31 31 H 0.96698 * 117.00017 * 180.02562 * 8 6 5 32 32 H 0.96994 * 119.99993 * 94.99823 * 9 2 1 33 33 H 1.08000 * 119.79206 * 359.96209 * 11 10 9 34 34 H 1.07994 * 119.83725 * 180.02562 * 12 11 10 35 35 H 1.07996 * 120.05076 * 179.97438 * 13 12 11 36 36 H 0.96999 * 120.00135 * 180.02562 * 18 17 15 37 37 H 1.07995 * 120.16705 * 0.02798 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0671 -1.3240 -2.5442 7 8 3.2857 -1.8621 -3.2923 8 8 5.3827 -1.3601 -2.8083 9 7 2.0184 -0.6907 1.1960 10 6 2.1519 0.0060 2.3993 11 6 1.8206 1.3581 2.4607 12 6 1.9487 2.0582 3.6487 13 6 2.4046 1.4250 4.7831 14 6 2.7431 0.0596 4.7363 15 6 3.2126 -0.5972 5.8972 16 1 2.9575 -0.2148 6.8745 17 6 4.0078 -1.7426 5.7799 18 7 4.6034 -2.0121 4.6466 19 14 4.2192 -2.8866 7.2414 20 1 3.1570 -3.9240 7.2157 21 1 5.5509 -3.5400 7.1701 22 1 4.1179 -2.1055 8.5002 23 6 2.6075 -0.6483 3.5290 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.6053 -0.2616 -2.1371 28 1 1.7515 -1.7714 -1.2058 29 1 3.8531 0.4371 -1.3575 30 1 3.9994 -1.0728 -0.4262 31 1 5.6569 -1.8274 -3.6092 32 1 2.2491 -1.6318 1.1524 33 1 1.4619 1.8634 1.5762 34 1 1.6888 3.1058 3.6857 35 1 2.5032 1.9753 5.7071 36 1 5.1544 -2.8062 4.5651 37 1 2.8611 -1.6971 3.4835 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313428647.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:34 Heat of formation + Delta-G solvation = -106.717045 kcal Electronic energy + Delta-G solvation = -19307.462948 eV Core-core repulsion = 16240.754627 eV Total energy + Delta-G solvation = -3066.708321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.27836 -39.79398 -37.82191 -37.06201 -35.39774 -33.69411 -31.46081 -31.24022 -28.63051 -27.08810 -26.20509 -23.19511 -22.52772 -21.82361 -21.04024 -19.10884 -19.04164 -17.72341 -17.42326 -17.12976 -16.56706 -16.38236 -16.10258 -15.11309 -14.69479 -14.61488 -14.30091 -14.11162 -13.90080 -13.85441 -13.34684 -12.89466 -12.84963 -12.70114 -12.60540 -12.55906 -12.27196 -12.16879 -12.06742 -11.73987 -11.59924 -11.43302 -11.21176 -11.03006 -10.45511 -9.19517 -8.59123 -7.83506 -6.28105 1.12379 1.19300 1.39203 1.39891 1.51850 1.61385 2.15717 2.24691 2.83481 2.88315 3.78963 3.91647 3.93681 4.08817 4.43037 4.44935 4.58692 4.64124 4.75400 4.83697 4.88798 4.93751 5.04911 5.10196 5.18904 5.23864 5.37886 5.43104 5.53698 5.61071 5.66545 6.01919 6.17137 6.26788 6.32893 6.63463 6.98998 7.00131 7.10599 7.13104 7.31465 8.41050 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.017827 B = 0.005089 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.242036 B = 5500.937736 C = 6523.500823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.155 3.845 3 H 0.079 0.921 4 C -0.102 4.102 5 C -0.114 4.114 6 C 0.488 3.512 7 O -0.550 6.550 8 O -0.516 6.516 9 N -0.748 5.748 10 C 0.227 3.773 11 C -0.298 4.298 12 C -0.064 4.064 13 C -0.288 4.288 14 C 0.108 3.892 15 C -0.506 4.506 16 H 0.068 0.932 17 C 0.040 3.960 18 N -0.820 5.820 19 Si 0.976 3.024 20 H -0.264 1.264 21 H -0.268 1.268 22 H -0.261 1.261 23 C -0.260 4.260 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.068 0.932 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.426 0.574 32 H 0.390 0.610 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.085 0.915 36 H 0.284 0.716 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.144 0.435 -12.522 12.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 H 0.097 0.903 4 C -0.140 4.140 5 C -0.151 4.151 6 C 0.332 3.668 7 O -0.441 6.441 8 O -0.330 6.330 9 N -0.380 5.380 10 C 0.126 3.874 11 C -0.320 4.320 12 C -0.083 4.083 13 C -0.309 4.309 14 C 0.105 3.895 15 C -0.536 4.536 16 H 0.086 0.914 17 C -0.175 4.175 18 N -0.446 5.446 19 Si 0.797 3.203 20 H -0.189 1.189 21 H -0.193 1.193 22 H -0.185 1.185 23 C -0.285 4.285 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.087 0.913 29 H 0.139 0.861 30 H 0.119 0.881 31 H 0.288 0.712 32 H 0.224 0.776 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.363 0.489 -12.635 12.717 hybrid contribution 0.567 -1.227 0.346 1.395 sum -0.796 -0.738 -12.289 12.337 Atomic orbital electron populations 1.22223 0.95611 1.02033 1.02192 1.20861 0.93836 0.96793 0.83498 0.90296 1.21612 0.92481 1.01995 0.97882 1.21408 0.97392 1.02937 0.93378 1.23711 0.79894 0.76494 0.86670 1.90698 1.57682 1.45168 1.50577 1.84548 1.25885 1.72665 1.49901 1.44663 1.74803 1.11650 1.06837 1.17680 0.92513 0.91435 0.85770 1.20264 1.19675 0.93556 0.98526 1.20654 0.96673 0.98335 0.92612 1.20998 1.16538 0.95055 0.98270 1.17697 0.87512 0.91154 0.93096 1.19791 1.29561 1.10324 0.93940 0.91382 1.26631 0.92715 0.98395 0.99781 1.69908 1.22205 1.24648 1.27847 0.85303 0.78385 0.78086 0.78484 1.18925 1.19261 1.18526 1.20663 1.14974 0.99504 0.93312 0.93594 0.90019 0.92931 0.88623 0.91345 0.86132 0.88070 0.71225 0.77638 0.86438 0.86602 0.89660 0.90548 0.88338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.92 9.42 71.98 0.68 -3.24 16 2 C 0.16 4.00 2.27 44.99 0.10 4.11 16 3 H 0.08 2.05 6.47 -2.39 -0.02 2.03 16 4 C -0.10 -2.20 4.04 30.60 0.12 -2.08 16 5 C -0.11 -2.46 5.70 29.85 0.17 -2.29 16 6 C 0.49 10.90 8.33 71.24 0.59 11.50 16 7 O -0.55 -15.10 16.74 21.96 0.37 -14.74 16 8 O -0.52 -9.36 13.42 -51.44 -0.69 -10.05 16 9 N -0.75 -25.48 4.70 -319.12 -1.50 -26.98 16 10 C 0.23 9.98 6.63 38.16 0.25 10.23 16 11 C -0.30 -12.44 8.86 22.59 0.20 -12.24 16 12 C -0.06 -2.83 10.02 22.20 0.22 -2.61 16 13 C -0.29 -14.68 9.79 22.75 0.22 -14.46 16 14 C 0.11 6.02 5.57 -21.31 -0.12 5.90 16 15 C -0.51 -28.29 9.05 23.46 0.21 -28.08 16 16 H 0.07 3.73 7.91 -2.91 -0.02 3.70 16 17 C 0.04 2.04 5.14 85.25 0.44 2.48 16 18 N -0.82 -43.22 10.95 21.82 0.24 -42.98 16 19 Si 0.98 39.24 29.59 68.60 2.03 41.27 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 21 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 22 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 23 C -0.26 -13.61 8.53 22.86 0.20 -13.42 16 24 H 0.04 1.29 7.70 -2.39 -0.02 1.27 16 25 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.10 1.82 8.10 -2.39 -0.02 1.80 16 28 H 0.07 1.59 8.10 -2.39 -0.02 1.57 16 29 H 0.12 2.27 8.14 -2.39 -0.02 2.26 16 30 H 0.10 2.51 7.75 -2.39 -0.02 2.49 16 31 H 0.43 3.85 9.10 -74.06 -0.67 3.18 16 32 H 0.39 13.10 8.61 -92.71 -0.80 12.30 16 33 H 0.12 4.16 6.08 -2.91 -0.02 4.15 16 34 H 0.12 4.31 8.06 -2.91 -0.02 4.28 16 35 H 0.09 4.21 8.06 -2.91 -0.02 4.18 16 36 H 0.28 13.55 8.30 -92.71 -0.77 12.78 16 37 H 0.10 5.40 6.16 -2.91 -0.02 5.38 16 Total: -1.00 -65.60 314.89 3.36 -62.24 By element: Atomic # 1 Polarization: 35.81 SS G_CDS: -0.38 Total: 35.44 kcal Atomic # 6 Polarization: -47.49 SS G_CDS: 3.29 Total: -44.20 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -1.26 Total: -69.96 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -0.32 Total: -24.79 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 2.03 Total: 41.27 kcal Total: -65.60 3.36 -62.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313428647.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.481 kcal (2) G-P(sol) polarization free energy of solvation -65.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds