Wall clock time and date at job start Mon Mar 30 2020 06:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47353 * 2 1 4 4 C 1.53002 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46959 * 54.99872 * 4 3 2 6 6 N 1.46494 * 109.47243 * 294.99857 * 4 3 2 7 7 C 1.39685 * 120.00068 * 155.00169 * 6 4 3 8 8 C 1.39330 * 119.95059 * 0.02562 * 7 6 4 9 9 C 1.38479 * 120.42407 * 179.72657 * 8 7 6 10 10 C 1.37688 * 120.32599 * 359.96909 * 9 8 7 11 11 C 1.40751 * 119.89110 * 0.03073 * 10 9 8 12 12 C 1.41412 * 120.20513 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99226 * 204.45721 * 12 11 10 14 14 C 1.39920 * 120.00549 * 24.45337 * 12 11 10 15 15 N 1.30838 * 119.99808 * 17.89254 * 14 12 11 16 16 Si 1.86802 * 120.00127 * 197.89868 * 14 12 11 17 17 H 1.48498 * 109.47143 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47170 * 119.99894 * 16 14 12 19 19 H 1.48497 * 109.46769 * 239.99713 * 16 14 12 20 20 C 1.38286 * 119.94964 * 179.72364 * 7 6 4 21 21 C 1.50698 * 109.46820 * 174.99606 * 4 3 2 22 22 O 1.20831 * 120.00002 * 119.99995 * 21 4 3 23 23 O 1.34232 * 120.00554 * 299.99907 * 21 4 3 24 24 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47082 * 300.00681 * 1 2 3 26 26 H 1.09000 * 109.46766 * 60.00334 * 1 2 3 27 27 H 1.08999 * 109.47583 * 239.99896 * 2 1 3 28 28 H 1.09002 * 109.47438 * 119.99963 * 2 1 3 29 29 H 1.08991 * 109.47200 * 59.99461 * 3 2 1 30 30 H 1.09000 * 109.46912 * 299.99577 * 3 2 1 31 31 H 0.97001 * 120.00220 * 334.99826 * 6 4 3 32 32 H 1.08001 * 119.79033 * 359.69744 * 8 7 6 33 33 H 1.07997 * 119.84259 * 179.97438 * 9 8 7 34 34 H 1.07997 * 120.05710 * 180.02562 * 10 9 8 35 35 H 0.96998 * 120.00067 * 180.02562 * 15 14 12 36 36 H 1.08002 * 120.16290 * 0.25445 * 20 7 6 37 37 H 0.96698 * 117.00422 * 180.02562 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 7 4.0578 0.8590 1.2527 7 6 5.3243 0.2718 1.3028 8 6 6.1229 0.2421 0.1616 9 6 7.3823 -0.3325 0.2017 10 6 7.8594 -0.8806 1.3711 11 6 7.0640 -0.8580 2.5321 12 6 7.5472 -1.4195 3.7367 13 1 6.8526 -1.7632 4.4889 14 6 8.9250 -1.5298 3.9539 15 7 9.7591 -0.8202 3.2379 16 14 9.5737 -2.6903 5.2662 17 1 8.4343 -3.3721 5.9311 18 1 10.4587 -3.7034 4.6373 19 1 10.3437 -1.9174 6.2736 20 6 5.7860 -0.2736 2.4868 21 6 4.0724 2.8579 -0.1233 22 8 4.7667 3.3307 0.7452 23 8 3.7486 3.5933 -1.1985 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.5014 0.8804 2.0470 32 1 5.7574 0.6695 -0.7605 33 1 7.9933 -0.3507 -0.6887 34 1 8.8424 -1.3272 1.3976 35 1 10.7142 -0.8969 3.3883 36 1 5.1681 -0.2505 3.3722 37 1 4.0947 4.4956 -1.2337 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313431238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:02 Heat of formation + Delta-G solvation = -84.217177 kcal Electronic energy + Delta-G solvation = -19508.231787 eV Core-core repulsion = 16442.499134 eV Total energy + Delta-G solvation = -3065.732653 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.16452 -37.88665 -36.28040 -35.76688 -34.03837 -32.74212 -30.04016 -29.64385 -26.71734 -25.38369 -24.82948 -21.51270 -21.40065 -20.66370 -19.74706 -17.86031 -17.42553 -16.48083 -15.83056 -15.45927 -15.11877 -15.06687 -14.56590 -14.12904 -13.54336 -13.29340 -13.03317 -12.68785 -12.35875 -12.11385 -11.98665 -11.69383 -11.42839 -11.30284 -11.24132 -11.12675 -10.93731 -10.76058 -10.64612 -10.38146 -10.17588 -9.79255 -9.33684 -9.23979 -8.81081 -7.37929 -6.69640 -6.30047 -4.29272 2.49154 2.85440 3.03517 3.11700 3.17335 3.26452 3.47695 3.97893 4.07990 4.68163 4.74089 4.88076 4.98470 5.29003 5.44621 5.49509 5.59549 5.75827 5.79579 5.87557 5.98548 6.13488 6.28252 6.30781 6.48538 6.70317 6.95862 7.03740 7.13266 7.32776 7.35952 7.72454 7.89358 8.13651 8.16093 8.24084 8.48604 8.52563 8.78433 9.01025 9.11434 10.26815 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025835 B = 0.004724 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.543793 B = 5925.244039 C = 6513.653171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.119 4.119 4 C 0.175 3.825 5 H 0.114 0.886 6 N -0.732 5.732 7 C 0.225 3.775 8 C -0.300 4.300 9 C -0.074 4.074 10 C -0.196 4.196 11 C 0.141 3.859 12 C -0.463 4.463 13 H 0.076 0.924 14 C 0.077 3.923 15 N -0.791 5.791 16 Si 0.906 3.094 17 H -0.261 1.261 18 H -0.272 1.272 19 H -0.275 1.275 20 C -0.280 4.280 21 C 0.447 3.553 22 O -0.493 6.493 23 O -0.526 6.526 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.395 0.605 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.115 0.885 35 H 0.278 0.722 36 H 0.090 0.910 37 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.598 2.927 -6.771 14.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.157 4.157 4 C 0.065 3.935 5 H 0.132 0.868 6 N -0.365 5.365 7 C 0.128 3.872 8 C -0.323 4.323 9 C -0.093 4.093 10 C -0.216 4.216 11 C 0.138 3.862 12 C -0.493 4.493 13 H 0.095 0.905 14 C -0.140 4.140 15 N -0.416 5.416 16 Si 0.730 3.270 17 H -0.184 1.184 18 H -0.198 1.198 19 H -0.201 1.201 20 C -0.304 4.304 21 C 0.285 3.715 22 O -0.378 6.378 23 O -0.338 6.338 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.229 0.771 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.133 0.867 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -12.275 2.748 -6.688 14.246 hybrid contribution 0.610 0.428 0.851 1.131 sum -11.665 3.175 -5.837 13.425 Atomic orbital electron populations 1.21768 0.95832 1.01667 1.01591 1.21504 0.95482 0.95641 1.03356 1.21826 0.91723 0.98712 1.03443 1.20248 0.94606 0.86685 0.91964 0.86823 1.44201 1.17713 1.64550 1.10085 1.17400 0.83305 0.92143 0.94341 1.19793 0.97983 1.18493 0.95982 1.20409 0.94215 0.97881 0.96833 1.21185 1.01528 1.07155 0.91770 1.17343 0.89654 0.86664 0.92571 1.19581 0.91516 1.35861 1.02343 0.90543 1.25899 0.97125 0.94306 0.96717 1.69879 1.04146 1.31477 1.36104 0.86310 0.79382 0.80647 0.80636 1.18442 1.19751 1.20097 1.20371 1.00581 1.14387 0.95022 1.25084 0.77838 0.89962 0.78573 1.90747 1.34346 1.71991 1.40694 1.84563 1.72642 1.30556 1.46025 0.92644 0.92851 0.92858 0.91519 0.90927 0.91283 0.89731 0.77094 0.90218 0.89626 0.86703 0.91073 0.89157 0.74107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.15 0.37 -0.91 16 2 C -0.12 -1.25 5.82 -26.73 -0.16 -1.41 16 3 C -0.12 -1.28 4.72 -26.73 -0.13 -1.41 16 4 C 0.18 2.57 2.18 -69.09 -0.15 2.42 16 5 H 0.11 1.68 6.47 -51.93 -0.34 1.34 16 6 N -0.73 -13.06 4.21 -53.34 -0.22 -13.28 16 7 C 0.23 5.12 6.54 -83.86 -0.55 4.57 16 8 C -0.30 -6.95 9.17 -39.09 -0.36 -7.31 16 9 C -0.07 -1.83 10.02 -39.69 -0.40 -2.22 16 10 C -0.20 -5.30 8.70 -38.83 -0.34 -5.64 16 11 C 0.14 3.88 5.57 -106.85 -0.60 3.29 16 12 C -0.46 -12.64 9.05 -37.75 -0.34 -12.99 16 13 H 0.08 2.01 7.91 -52.48 -0.42 1.59 16 14 C 0.08 2.00 5.14 -17.35 -0.09 1.91 16 15 N -0.79 -21.14 10.96 55.55 0.61 -20.53 16 16 Si 0.91 19.07 29.60 -169.99 -5.03 14.03 16 17 H -0.26 -5.42 7.11 56.52 0.40 -5.01 16 18 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 19 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 20 C -0.28 -7.08 9.63 -38.67 -0.37 -7.45 16 21 C 0.45 7.14 7.54 36.00 0.27 7.42 16 22 O -0.49 -10.12 17.12 -18.75 -0.32 -10.45 16 23 O -0.53 -6.34 13.23 -39.26 -0.52 -6.86 16 24 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.84 7.75 -51.93 -0.40 0.44 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.80 8.00 -51.93 -0.42 0.38 16 31 H 0.39 6.47 8.61 -40.82 -0.35 6.11 16 32 H 0.08 1.67 6.16 -52.49 -0.32 1.34 16 33 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 34 H 0.12 3.19 6.15 -52.49 -0.32 2.87 16 35 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 36 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 37 H 0.40 3.29 9.10 45.56 0.41 3.71 16 LS Contribution 315.69 15.07 4.76 4.76 Total: -1.00 -31.81 315.69 -7.81 -39.62 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -4.25 Total: 12.44 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -2.83 Total: -19.74 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.38 Total: -33.81 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: -0.84 Total: -17.30 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.03 Total: 14.03 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.81 -7.81 -39.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313431238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.598 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds