Wall clock time and date at job start Mon Mar 30 2020 06:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47353 * 2 1 4 4 C 1.53002 * 109.47145 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.46959 * 54.99872 * 4 3 2 6 6 N 1.46494 * 109.47243 * 294.99857 * 4 3 2 7 7 C 1.39685 * 120.00068 * 155.00169 * 6 4 3 8 8 C 1.39330 * 119.95059 * 0.02562 * 7 6 4 9 9 C 1.38479 * 120.42407 * 179.72657 * 8 7 6 10 10 C 1.37688 * 120.32599 * 359.96909 * 9 8 7 11 11 C 1.40751 * 119.89110 * 0.03073 * 10 9 8 12 12 C 1.41412 * 120.20513 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99226 * 204.45721 * 12 11 10 14 14 C 1.39920 * 120.00549 * 24.45337 * 12 11 10 15 15 N 1.30838 * 119.99808 * 17.89254 * 14 12 11 16 16 Si 1.86802 * 120.00127 * 197.89868 * 14 12 11 17 17 H 1.48498 * 109.47143 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47170 * 119.99894 * 16 14 12 19 19 H 1.48497 * 109.46769 * 239.99713 * 16 14 12 20 20 C 1.38286 * 119.94964 * 179.72364 * 7 6 4 21 21 C 1.50698 * 109.46820 * 174.99606 * 4 3 2 22 22 O 1.20831 * 120.00002 * 119.99995 * 21 4 3 23 23 O 1.34232 * 120.00554 * 299.99907 * 21 4 3 24 24 H 1.08999 * 109.47043 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47082 * 300.00681 * 1 2 3 26 26 H 1.09000 * 109.46766 * 60.00334 * 1 2 3 27 27 H 1.08999 * 109.47583 * 239.99896 * 2 1 3 28 28 H 1.09002 * 109.47438 * 119.99963 * 2 1 3 29 29 H 1.08991 * 109.47200 * 59.99461 * 3 2 1 30 30 H 1.09000 * 109.46912 * 299.99577 * 3 2 1 31 31 H 0.97001 * 120.00220 * 334.99826 * 6 4 3 32 32 H 1.08001 * 119.79033 * 359.69744 * 8 7 6 33 33 H 1.07997 * 119.84259 * 179.97438 * 9 8 7 34 34 H 1.07997 * 120.05710 * 180.02562 * 10 9 8 35 35 H 0.96998 * 120.00067 * 180.02562 * 15 14 12 36 36 H 1.08002 * 120.16290 * 0.25445 * 20 7 6 37 37 H 0.96698 * 117.00422 * 180.02562 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 7 4.0578 0.8590 1.2527 7 6 5.3243 0.2718 1.3028 8 6 6.1229 0.2421 0.1616 9 6 7.3823 -0.3325 0.2017 10 6 7.8594 -0.8806 1.3711 11 6 7.0640 -0.8580 2.5321 12 6 7.5472 -1.4195 3.7367 13 1 6.8526 -1.7632 4.4889 14 6 8.9250 -1.5298 3.9539 15 7 9.7591 -0.8202 3.2379 16 14 9.5737 -2.6903 5.2662 17 1 8.4343 -3.3721 5.9311 18 1 10.4587 -3.7034 4.6373 19 1 10.3437 -1.9174 6.2736 20 6 5.7860 -0.2736 2.4868 21 6 4.0724 2.8579 -0.1233 22 8 4.7667 3.3307 0.7452 23 8 3.7486 3.5933 -1.1985 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6768 1.9563 -0.8900 31 1 3.5014 0.8804 2.0470 32 1 5.7574 0.6695 -0.7605 33 1 7.9933 -0.3507 -0.6887 34 1 8.8424 -1.3272 1.3976 35 1 10.7142 -0.8969 3.3883 36 1 5.1681 -0.2505 3.3722 37 1 4.0947 4.4956 -1.2337 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313431238.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:01 Heat of formation + Delta-G solvation = -104.210410 kcal Electronic energy + Delta-G solvation = -19509.098759 eV Core-core repulsion = 16442.499134 eV Total energy + Delta-G solvation = -3066.599625 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.44711 -39.58630 -37.63686 -36.98112 -35.65612 -34.24911 -31.75993 -31.20144 -28.30618 -27.21507 -25.98515 -23.04049 -22.66512 -22.16567 -21.27966 -19.33374 -18.98861 -17.74877 -17.50407 -16.94809 -16.58814 -16.33373 -16.29191 -15.48741 -14.74815 -14.64763 -14.43670 -14.23665 -13.97583 -13.57666 -13.37648 -13.08241 -12.79543 -12.71120 -12.62309 -12.54227 -12.25485 -12.06730 -11.96807 -11.74763 -11.55240 -11.48274 -11.22584 -11.06386 -10.57048 -9.36299 -8.62129 -8.07047 -6.33715 1.02162 1.23956 1.28502 1.38827 1.53912 1.56388 2.07467 2.23087 2.68018 2.80569 3.69686 3.83490 3.96350 4.12065 4.30867 4.45821 4.52529 4.64862 4.66223 4.78978 4.91787 5.03388 5.10712 5.14922 5.17707 5.29717 5.36516 5.38482 5.51477 5.53313 5.64407 5.87153 5.97404 6.16772 6.26506 6.56862 6.82882 6.90345 7.00601 7.06363 7.17859 8.36816 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.025835 B = 0.004724 C = 0.004298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.543793 B = 5925.244039 C = 6513.653171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.107 4.107 4 C 0.169 3.831 5 H 0.119 0.881 6 N -0.724 5.724 7 C 0.238 3.762 8 C -0.303 4.303 9 C -0.076 4.076 10 C -0.229 4.229 11 C 0.112 3.888 12 C -0.501 4.501 13 H 0.074 0.926 14 C 0.035 3.965 15 N -0.825 5.825 16 Si 0.984 3.016 17 H -0.257 1.257 18 H -0.263 1.263 19 H -0.267 1.267 20 C -0.305 4.305 21 C 0.456 3.544 22 O -0.546 6.546 23 O -0.508 6.508 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.401 0.599 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.287 0.713 36 H 0.092 0.908 37 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.130 3.257 -7.728 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.145 4.145 4 C 0.060 3.940 5 H 0.137 0.863 6 N -0.357 5.357 7 C 0.138 3.862 8 C -0.326 4.326 9 C -0.095 4.095 10 C -0.250 4.250 11 C 0.109 3.891 12 C -0.531 4.531 13 H 0.092 0.908 14 C -0.180 4.180 15 N -0.451 5.451 16 Si 0.804 3.196 17 H -0.181 1.181 18 H -0.187 1.187 19 H -0.191 1.191 20 C -0.329 4.329 21 C 0.296 3.704 22 O -0.435 6.435 23 O -0.321 6.321 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.237 0.763 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -13.867 3.117 -7.694 16.162 hybrid contribution 0.953 0.462 0.984 1.445 sum -12.914 3.579 -6.710 14.987 Atomic orbital electron populations 1.21736 0.94214 1.02154 1.02397 1.21488 0.96865 0.95029 1.02530 1.21821 0.88404 0.99415 1.04850 1.20580 0.97155 0.85946 0.90301 0.86347 1.44207 1.15904 1.63710 1.11846 1.17438 0.84853 0.90647 0.93293 1.20094 0.97487 1.17880 0.97148 1.20708 0.95071 0.96879 0.96811 1.21118 1.01334 1.09615 0.92928 1.17717 0.90879 0.87391 0.93107 1.19847 0.92735 1.37735 1.02766 0.90799 1.26800 0.96728 0.95364 0.99086 1.69938 1.04799 1.32599 1.37763 0.85144 0.78683 0.78207 0.77527 1.18078 1.18705 1.19136 1.20506 1.00411 1.15609 0.96346 1.25120 0.76535 0.90354 0.78363 1.90750 1.36846 1.73212 1.42709 1.84495 1.71897 1.31844 1.43834 0.92408 0.92541 0.91547 0.91458 0.92734 0.90718 0.87363 0.76315 0.87520 0.87389 0.88472 0.90264 0.88969 0.71731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.12 -2.20 5.82 30.59 0.18 -2.02 16 3 C -0.11 -1.97 4.72 30.60 0.14 -1.83 16 4 C 0.17 4.56 2.18 44.25 0.10 4.65 16 5 H 0.12 3.15 6.47 -2.39 -0.02 3.13 16 6 N -0.72 -25.08 4.21 -322.68 -1.36 -26.44 16 7 C 0.24 10.79 6.54 38.16 0.25 11.04 16 8 C -0.30 -13.83 9.17 22.59 0.21 -13.62 16 9 C -0.08 -3.75 10.02 22.20 0.22 -3.52 16 10 C -0.23 -12.86 8.70 22.75 0.20 -12.66 16 11 C 0.11 6.43 5.57 -21.31 -0.12 6.31 16 12 C -0.50 -28.47 9.05 23.46 0.21 -28.26 16 13 H 0.07 4.05 7.91 -2.91 -0.02 4.03 16 14 C 0.03 1.85 5.14 85.25 0.44 2.28 16 15 N -0.83 -45.46 10.96 21.82 0.24 -45.22 16 16 Si 0.98 39.71 29.60 68.60 2.03 41.74 16 17 H -0.26 -10.11 7.11 99.48 0.71 -9.41 16 18 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 19 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 20 C -0.30 -15.85 9.63 22.86 0.22 -15.63 16 21 C 0.46 13.48 7.54 71.24 0.54 14.02 16 22 O -0.55 -21.83 17.12 21.95 0.38 -21.46 16 23 O -0.51 -10.47 13.23 -51.44 -0.68 -11.16 16 24 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.05 1.19 7.75 -2.39 -0.02 1.17 16 29 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.11 1.56 8.00 -2.39 -0.02 1.54 16 31 H 0.40 12.84 8.61 -92.71 -0.80 12.04 16 32 H 0.11 4.21 6.16 -2.91 -0.02 4.20 16 33 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 34 H 0.10 5.67 6.15 -2.91 -0.02 5.66 16 35 H 0.29 14.19 8.30 -92.71 -0.77 13.42 16 36 H 0.09 4.58 8.06 -2.91 -0.02 4.56 16 37 H 0.42 5.51 9.10 -74.06 -0.67 4.84 16 Total: -1.00 -71.01 315.69 3.53 -67.48 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: -0.38 Total: 35.66 kcal Atomic # 6 Polarization: -43.91 SS G_CDS: 3.30 Total: -40.61 kcal Atomic # 7 Polarization: -70.54 SS G_CDS: -1.12 Total: -71.66 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.30 Total: -32.61 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -71.01 3.53 -67.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313431238.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.730 kcal (2) G-P(sol) polarization free energy of solvation -71.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds