Wall clock time and date at job start Mon Mar 30 2020 06:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46694 * 2 1 4 4 N 1.46498 * 109.47203 * 120.00099 * 2 1 3 5 5 C 1.39685 * 120.00014 * 274.99960 * 4 2 1 6 6 C 1.39334 * 119.95257 * 0.02562 * 5 4 2 7 7 C 1.38469 * 120.42651 * 179.97438 * 6 5 4 8 8 C 1.37691 * 120.32547 * 359.97140 * 7 6 5 9 9 C 1.40745 * 119.89154 * 0.02576 * 8 7 6 10 10 C 1.41409 * 120.20765 * 179.97438 * 9 8 7 11 11 H 1.07993 * 120.00089 * 24.34001 * 10 9 8 12 12 C 1.39931 * 119.99968 * 204.33498 * 10 9 8 13 13 N 1.30826 * 120.00009 * 17.73978 * 12 10 9 14 14 Si 1.86802 * 120.00085 * 197.73791 * 12 10 9 15 15 H 1.48501 * 109.47252 * 89.99924 * 14 12 10 16 16 H 1.48493 * 109.47126 * 210.00066 * 14 12 10 17 17 H 1.48501 * 109.47087 * 330.00204 * 14 12 10 18 18 C 1.38276 * 119.94965 * 179.72178 * 5 4 2 19 19 C 1.52997 * 109.46977 * 240.00273 * 2 1 3 20 20 H 1.09001 * 109.47444 * 185.00067 * 19 2 1 21 21 C 1.53000 * 109.47114 * 304.99727 * 19 2 1 22 22 C 1.50704 * 109.47234 * 64.99742 * 19 2 1 23 23 O 1.20818 * 120.00008 * 0.02562 * 22 19 2 24 24 O 1.34233 * 119.99692 * 179.97438 * 22 19 2 25 25 H 1.09007 * 109.47033 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46964 * 299.99751 * 1 2 3 27 27 H 1.08994 * 109.47309 * 59.99934 * 1 2 3 28 28 H 0.97004 * 119.99921 * 95.00012 * 4 2 1 29 29 H 1.08007 * 119.78414 * 359.97438 * 6 5 4 30 30 H 1.08003 * 119.84343 * 179.97438 * 7 6 5 31 31 H 1.08003 * 120.05750 * 180.02562 * 8 7 6 32 32 H 0.97004 * 120.00513 * 180.02562 * 13 12 10 33 33 H 1.07999 * 120.16323 * 0.03287 * 18 5 4 34 34 H 1.09003 * 109.47141 * 180.02562 * 21 19 2 35 35 H 1.08998 * 109.47361 * 300.00065 * 21 19 2 36 36 H 1.09004 * 109.47274 * 60.00334 * 21 19 2 37 37 H 0.96696 * 116.99488 * 180.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1518 0.0062 2.3994 6 6 1.8197 1.3580 2.4610 7 6 1.9476 2.0581 3.6488 8 6 2.4044 1.4252 4.7831 9 6 2.7438 0.0601 4.7362 10 6 3.2141 -0.5964 5.8970 11 1 2.9589 -0.2143 6.8743 12 6 4.0101 -1.7413 5.7793 13 7 4.6054 -2.0104 4.6459 14 14 4.2227 -2.8853 7.2406 15 1 3.1610 -3.9233 7.2153 16 1 5.5547 -3.5377 7.1688 17 1 4.1212 -2.1042 8.4996 18 6 2.6074 -0.6481 3.5292 19 6 2.0400 -0.7212 -1.2493 20 1 3.1263 -0.7995 -1.2057 21 6 1.4300 -2.1228 -1.3137 22 6 1.6413 0.0571 -2.4766 23 8 1.0140 1.0836 -2.3637 24 8 1.9839 -0.3895 -3.6952 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 2.2491 -1.6318 1.1525 29 1 1.4600 1.8629 1.5766 30 1 1.6878 3.1058 3.6858 31 1 2.5022 1.9754 5.7073 32 1 5.1569 -2.8042 4.5641 33 1 2.8610 -1.6969 3.4837 34 1 1.7936 -2.6368 -2.2035 35 1 1.7183 -2.6858 -0.4261 36 1 0.3436 -2.0447 -1.3574 37 1 1.7061 0.1440 -4.4523 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313431669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:48 Heat of formation + Delta-G solvation = -78.715939 kcal Electronic energy + Delta-G solvation = -19637.358071 eV Core-core repulsion = 16571.863969 eV Total energy + Delta-G solvation = -3065.494102 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.63169 -38.15628 -36.63615 -35.90862 -33.67017 -32.37464 -29.51890 -29.19288 -27.06596 -25.64224 -25.12511 -22.86398 -21.12867 -20.27814 -19.12086 -18.14701 -17.25537 -16.55154 -16.20711 -15.63859 -14.91612 -14.87675 -14.24528 -14.17767 -13.60221 -13.28244 -12.80050 -12.67479 -12.33622 -12.17785 -12.04910 -11.91840 -11.61161 -11.43579 -11.21336 -11.03280 -10.86592 -10.74119 -10.48619 -10.33760 -10.31990 -9.59198 -9.39813 -9.23605 -8.77014 -7.27994 -6.71243 -6.15959 -4.28750 2.11338 2.85449 2.88924 3.11161 3.14980 3.25830 3.36487 3.99479 4.36471 4.58044 4.73945 4.81581 5.00115 5.29911 5.55361 5.60560 5.73218 5.84532 5.92566 5.96772 6.12282 6.27816 6.31790 6.39862 6.59765 6.69812 6.91555 7.13702 7.16615 7.40271 7.45623 7.77405 7.84138 7.99047 8.13966 8.19906 8.51237 8.70942 8.85672 9.03771 9.14366 10.27888 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027845 B = 0.004732 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.327692 B = 5915.247573 C = 6613.293154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.174 3.826 3 H 0.083 0.917 4 N -0.754 5.754 5 C 0.217 3.783 6 C -0.298 4.298 7 C -0.066 4.066 8 C -0.257 4.257 9 C 0.139 3.861 10 C -0.465 4.465 11 H 0.076 0.924 12 C 0.079 3.921 13 N -0.794 5.794 14 Si 0.904 3.096 15 H -0.269 1.269 16 H -0.279 1.279 17 H -0.263 1.263 18 C -0.230 4.230 19 C -0.092 4.092 20 H 0.114 0.886 21 C -0.146 4.146 22 C 0.487 3.513 23 O -0.507 6.507 24 O -0.517 6.517 25 H 0.053 0.947 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.388 0.612 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.277 0.723 33 H 0.117 0.883 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.749 -2.029 -12.580 13.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.067 3.933 3 H 0.101 0.899 4 N -0.388 5.388 5 C 0.119 3.881 6 C -0.321 4.321 7 C -0.085 4.085 8 C -0.278 4.278 9 C 0.136 3.864 10 C -0.495 4.495 11 H 0.094 0.906 12 C -0.139 4.139 13 N -0.420 5.420 14 Si 0.729 3.271 15 H -0.194 1.194 16 H -0.205 1.205 17 H -0.187 1.187 18 C -0.254 4.254 19 C -0.112 4.112 20 H 0.131 0.869 21 C -0.203 4.203 22 C 0.329 3.671 23 O -0.395 6.395 24 O -0.329 6.329 25 H 0.072 0.928 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.223 0.777 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -3.688 -1.994 -12.410 13.099 hybrid contribution 0.163 -0.492 0.051 0.521 sum -3.525 -2.486 -12.360 13.091 Atomic orbital electron populations 1.22475 0.96211 1.01716 1.02909 1.20357 0.93784 0.96444 0.82702 0.89887 1.44438 1.76001 1.11506 1.06855 1.17596 0.94553 0.91009 0.84931 1.19959 1.20439 0.93822 0.97848 1.20295 0.98161 0.96856 0.93194 1.20867 1.14481 0.95287 0.97121 1.17315 0.86792 0.90036 0.92289 1.19563 1.27609 1.08356 0.94013 0.90605 1.25859 0.93608 0.97567 0.96822 1.69865 1.21962 1.24050 1.26096 0.86389 0.78028 0.80445 0.82255 1.19417 1.20480 1.18702 1.20719 1.12538 1.00037 0.92099 1.21315 1.03660 0.96414 0.89823 0.86850 1.21841 1.01556 0.93600 1.03332 1.23383 0.75553 0.83669 0.84503 1.90710 1.37207 1.24614 1.86939 1.84545 1.74885 1.56409 1.17048 0.92845 0.91675 0.91482 0.77721 0.89352 0.89655 0.89434 0.91247 0.86528 0.91411 0.90660 0.91488 0.73428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.64 8.67 37.16 0.32 -2.32 16 2 C 0.17 2.73 1.69 -67.93 -0.11 2.61 16 3 H 0.08 1.47 6.29 -51.93 -0.33 1.15 16 4 N -0.75 -13.81 5.18 -52.22 -0.27 -14.09 16 5 C 0.22 5.00 6.63 -83.86 -0.56 4.44 16 6 C -0.30 -6.84 8.85 -39.09 -0.35 -7.19 16 7 C -0.07 -1.55 10.01 -39.70 -0.40 -1.95 16 8 C -0.26 -6.55 9.79 -38.83 -0.38 -6.93 16 9 C 0.14 3.77 5.57 -106.85 -0.60 3.18 16 10 C -0.47 -12.58 9.05 -37.74 -0.34 -12.93 16 11 H 0.08 1.99 7.91 -52.49 -0.41 1.57 16 12 C 0.08 1.99 5.14 -17.35 -0.09 1.90 16 13 N -0.79 -20.56 10.96 55.55 0.61 -19.95 16 14 Si 0.90 18.86 29.59 -169.99 -5.03 13.83 16 15 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 16 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 18 C -0.23 -5.96 8.53 -38.67 -0.33 -6.29 16 19 C -0.09 -1.14 2.77 -91.77 -0.25 -1.39 16 20 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 21 C -0.15 -1.51 8.51 37.16 0.32 -1.20 16 22 C 0.49 5.90 7.34 36.01 0.26 6.16 16 23 O -0.51 -7.55 14.73 -18.74 -0.28 -7.82 16 24 O -0.52 -4.68 13.33 -39.27 -0.52 -5.20 16 25 H 0.05 0.74 6.34 -51.92 -0.33 0.41 16 26 H 0.06 1.11 7.69 -51.93 -0.40 0.71 16 27 H 0.07 0.99 5.96 -51.93 -0.31 0.68 16 28 H 0.39 6.61 7.18 -40.82 -0.29 6.31 16 29 H 0.09 1.88 6.07 -52.48 -0.32 1.56 16 30 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.09 2.12 8.06 -52.48 -0.42 1.69 16 32 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 33 H 0.12 3.09 6.16 -52.49 -0.32 2.77 16 34 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 35 H 0.07 0.79 6.77 -51.93 -0.35 0.44 16 36 H 0.07 0.69 6.34 -51.93 -0.33 0.36 16 37 H 0.41 1.93 9.10 45.56 0.41 2.35 16 LS Contribution 304.16 15.07 4.58 4.58 Total: -1.00 -30.15 304.16 -7.21 -37.37 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -3.81 Total: 13.15 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -2.50 Total: -21.88 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.34 Total: -34.03 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.80 Total: -13.02 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -5.03 Total: 13.83 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.15 -7.21 -37.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313431669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.346 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds