Wall clock time and date at job start Mon Mar 30 2020 06:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46694 * 2 1 4 4 N 1.46498 * 109.47203 * 120.00099 * 2 1 3 5 5 C 1.39685 * 120.00014 * 274.99960 * 4 2 1 6 6 C 1.39334 * 119.95257 * 0.02562 * 5 4 2 7 7 C 1.38469 * 120.42651 * 179.97438 * 6 5 4 8 8 C 1.37691 * 120.32547 * 359.97140 * 7 6 5 9 9 C 1.40745 * 119.89154 * 0.02576 * 8 7 6 10 10 C 1.41409 * 120.20765 * 179.97438 * 9 8 7 11 11 H 1.07993 * 120.00089 * 24.34001 * 10 9 8 12 12 C 1.39931 * 119.99968 * 204.33498 * 10 9 8 13 13 N 1.30826 * 120.00009 * 17.73978 * 12 10 9 14 14 Si 1.86802 * 120.00085 * 197.73791 * 12 10 9 15 15 H 1.48501 * 109.47252 * 89.99924 * 14 12 10 16 16 H 1.48493 * 109.47126 * 210.00066 * 14 12 10 17 17 H 1.48501 * 109.47087 * 330.00204 * 14 12 10 18 18 C 1.38276 * 119.94965 * 179.72178 * 5 4 2 19 19 C 1.52997 * 109.46977 * 240.00273 * 2 1 3 20 20 H 1.09001 * 109.47444 * 185.00067 * 19 2 1 21 21 C 1.53000 * 109.47114 * 304.99727 * 19 2 1 22 22 C 1.50704 * 109.47234 * 64.99742 * 19 2 1 23 23 O 1.20818 * 120.00008 * 0.02562 * 22 19 2 24 24 O 1.34233 * 119.99692 * 179.97438 * 22 19 2 25 25 H 1.09007 * 109.47033 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46964 * 299.99751 * 1 2 3 27 27 H 1.08994 * 109.47309 * 59.99934 * 1 2 3 28 28 H 0.97004 * 119.99921 * 95.00012 * 4 2 1 29 29 H 1.08007 * 119.78414 * 359.97438 * 6 5 4 30 30 H 1.08003 * 119.84343 * 179.97438 * 7 6 5 31 31 H 1.08003 * 120.05750 * 180.02562 * 8 7 6 32 32 H 0.97004 * 120.00513 * 180.02562 * 13 12 10 33 33 H 1.07999 * 120.16323 * 0.03287 * 18 5 4 34 34 H 1.09003 * 109.47141 * 180.02562 * 21 19 2 35 35 H 1.08998 * 109.47361 * 300.00065 * 21 19 2 36 36 H 1.09004 * 109.47274 * 60.00334 * 21 19 2 37 37 H 0.96696 * 116.99488 * 180.02562 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1518 0.0062 2.3994 6 6 1.8197 1.3580 2.4610 7 6 1.9476 2.0581 3.6488 8 6 2.4044 1.4252 4.7831 9 6 2.7438 0.0601 4.7362 10 6 3.2141 -0.5964 5.8970 11 1 2.9589 -0.2143 6.8743 12 6 4.0101 -1.7413 5.7793 13 7 4.6054 -2.0104 4.6459 14 14 4.2227 -2.8853 7.2406 15 1 3.1610 -3.9233 7.2153 16 1 5.5547 -3.5377 7.1688 17 1 4.1212 -2.1042 8.4996 18 6 2.6074 -0.6481 3.5292 19 6 2.0400 -0.7212 -1.2493 20 1 3.1263 -0.7995 -1.2057 21 6 1.4300 -2.1228 -1.3137 22 6 1.6413 0.0571 -2.4766 23 8 1.0140 1.0836 -2.3637 24 8 1.9839 -0.3895 -3.6952 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 2.2491 -1.6318 1.1525 29 1 1.4600 1.8629 1.5766 30 1 1.6878 3.1058 3.6858 31 1 2.5022 1.9754 5.7073 32 1 5.1569 -2.8042 4.5641 33 1 2.8610 -1.6969 3.4837 34 1 1.7936 -2.6368 -2.2035 35 1 1.7183 -2.6858 -0.4261 36 1 0.3436 -2.0447 -1.3574 37 1 1.7061 0.1440 -4.4523 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313431669.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:48 Heat of formation + Delta-G solvation = -97.491742 kcal Electronic energy + Delta-G solvation = -19638.172251 eV Core-core repulsion = 16571.863969 eV Total energy + Delta-G solvation = -3066.308282 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.61782 -39.77819 -37.95816 -36.97800 -35.47430 -33.88861 -31.36292 -30.57106 -28.72289 -27.08564 -26.57261 -24.04557 -22.95574 -21.88108 -20.49753 -19.13365 -18.94095 -17.97421 -17.39588 -16.84216 -16.58925 -16.42646 -15.82896 -15.53629 -14.82185 -14.60733 -14.39615 -14.21527 -13.96453 -13.50208 -13.28298 -13.12560 -13.00172 -12.92021 -12.73548 -12.49662 -12.38196 -12.08972 -11.96243 -11.78749 -11.55088 -11.35539 -11.22700 -11.05351 -10.52437 -9.23867 -8.60458 -7.91661 -6.30165 1.09807 1.17562 1.34307 1.40798 1.53220 1.60117 1.94595 2.25167 2.82748 2.94479 3.48934 3.79011 3.90039 4.08287 4.35137 4.39545 4.51341 4.60773 4.75845 4.79667 4.88494 4.91562 4.99227 5.03376 5.18764 5.22674 5.32127 5.39280 5.47837 5.61324 5.63580 5.97536 6.11557 6.23091 6.26594 6.59119 6.94537 6.99251 7.06055 7.08141 7.27147 8.40407 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027845 B = 0.004732 C = 0.004233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.327692 B = 5915.247573 C = 6613.293154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.173 3.827 3 H 0.063 0.937 4 N -0.743 5.743 5 C 0.225 3.775 6 C -0.303 4.303 7 C -0.064 4.064 8 C -0.285 4.285 9 C 0.109 3.891 10 C -0.505 4.505 11 H 0.070 0.930 12 C 0.040 3.960 13 N -0.821 5.821 14 Si 0.979 3.021 15 H -0.262 1.262 16 H -0.267 1.267 17 H -0.262 1.262 18 C -0.256 4.256 19 C -0.089 4.089 20 H 0.120 0.880 21 C -0.142 4.142 22 C 0.497 3.503 23 O -0.539 6.539 24 O -0.506 6.506 25 H 0.068 0.932 26 H 0.042 0.958 27 H 0.073 0.927 28 H 0.396 0.604 29 H 0.106 0.894 30 H 0.114 0.886 31 H 0.089 0.911 32 H 0.286 0.714 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.836 -3.079 -13.998 14.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.067 3.933 3 H 0.081 0.919 4 N -0.376 5.376 5 C 0.125 3.875 6 C -0.326 4.326 7 C -0.083 4.083 8 C -0.306 4.306 9 C 0.107 3.893 10 C -0.534 4.534 11 H 0.088 0.912 12 C -0.175 4.175 13 N -0.446 5.446 14 Si 0.800 3.200 15 H -0.187 1.187 16 H -0.192 1.192 17 H -0.186 1.186 18 C -0.280 4.280 19 C -0.109 4.109 20 H 0.138 0.862 21 C -0.199 4.199 22 C 0.340 3.660 23 O -0.430 6.430 24 O -0.319 6.319 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.091 0.909 28 H 0.231 0.769 29 H 0.124 0.876 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges -3.779 -3.052 -13.900 14.724 hybrid contribution 0.178 -0.114 0.313 0.377 sum -3.600 -3.166 -13.587 14.408 Atomic orbital electron populations 1.22376 0.95556 1.02440 1.02070 1.20411 0.94173 0.95641 0.83098 0.91918 1.44448 1.75053 1.11803 1.06320 1.17654 0.92815 0.91280 0.85792 1.20230 1.20049 0.93924 0.98375 1.20627 0.96792 0.98272 0.92608 1.21011 1.16259 0.95165 0.98130 1.17705 0.87456 0.91049 0.93138 1.19803 1.29428 1.10334 0.93881 0.91180 1.26667 0.92583 0.98353 0.99898 1.69907 1.22081 1.24714 1.27946 0.85263 0.78479 0.78014 0.78255 1.18693 1.19180 1.18591 1.20656 1.14667 0.99650 0.93008 1.21183 1.04046 0.97103 0.88523 0.86222 1.21843 1.01609 0.92220 1.04250 1.23149 0.74796 0.82859 0.85232 1.90712 1.38838 1.25919 1.87500 1.84480 1.74227 1.56436 1.16790 0.91359 0.93878 0.90856 0.76866 0.87572 0.86796 0.89321 0.90355 0.87780 0.89398 0.90849 0.91238 0.70925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.81 8.67 71.98 0.62 -4.19 16 2 C 0.17 5.21 1.69 44.99 0.08 5.28 16 3 H 0.06 2.18 6.29 -2.39 -0.02 2.16 16 4 N -0.74 -26.76 5.18 -319.12 -1.65 -28.41 16 5 C 0.23 10.43 6.63 38.16 0.25 10.68 16 6 C -0.30 -13.83 8.85 22.59 0.20 -13.63 16 7 C -0.06 -3.01 10.01 22.20 0.22 -2.79 16 8 C -0.28 -14.91 9.79 22.75 0.22 -14.69 16 9 C 0.11 6.16 5.57 -21.31 -0.12 6.04 16 10 C -0.50 -28.22 9.05 23.46 0.21 -28.01 16 11 H 0.07 3.83 7.91 -2.91 -0.02 3.80 16 12 C 0.04 2.05 5.14 85.25 0.44 2.49 16 13 N -0.82 -43.06 10.96 21.82 0.24 -42.82 16 14 Si 0.98 38.82 29.59 68.60 2.03 40.85 16 15 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 16 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 17 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 18 C -0.26 -13.58 8.53 22.86 0.20 -13.38 16 19 C -0.09 -2.00 2.77 -11.54 -0.03 -2.03 16 20 H 0.12 2.58 8.14 -2.39 -0.02 2.56 16 21 C -0.14 -2.55 8.51 71.98 0.61 -1.94 16 22 C 0.50 10.84 7.34 71.24 0.52 11.36 16 23 O -0.54 -15.13 14.73 21.99 0.32 -14.80 16 24 O -0.51 -7.50 13.33 -51.45 -0.69 -8.18 16 25 H 0.07 1.75 6.34 -2.38 -0.02 1.74 16 26 H 0.04 1.43 7.69 -2.39 -0.02 1.41 16 27 H 0.07 2.06 5.96 -2.39 -0.01 2.05 16 28 H 0.40 13.15 7.18 -92.71 -0.67 12.48 16 29 H 0.11 4.42 6.07 -2.91 -0.02 4.41 16 30 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 31 H 0.09 4.45 8.06 -2.91 -0.02 4.42 16 32 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 33 H 0.10 5.69 6.16 -2.91 -0.02 5.67 16 34 H 0.09 1.26 8.11 -2.39 -0.02 1.24 16 35 H 0.07 1.36 6.77 -2.39 -0.02 1.35 16 36 H 0.07 1.23 6.34 -2.39 -0.02 1.21 16 37 H 0.43 2.64 9.10 -74.06 -0.67 1.96 16 Total: -1.00 -66.06 304.16 3.46 -62.60 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: -0.23 Total: 35.57 kcal Atomic # 6 Polarization: -48.23 SS G_CDS: 3.43 Total: -44.80 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: -1.41 Total: -71.23 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.36 Total: -22.99 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.85 kcal Total: -66.06 3.46 -62.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313431669.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.891 kcal (2) G-P(sol) polarization free energy of solvation -66.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds