Wall clock time and date at job start Mon Mar 30 2020 06:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.46999 * 2 1 4 4 N 1.46500 * 109.47052 * 239.99887 * 2 1 3 5 5 C 1.39687 * 119.99928 * 85.00265 * 4 2 1 6 6 C 1.39336 * 119.95020 * 359.97438 * 5 4 2 7 7 C 1.38474 * 120.42232 * 179.71904 * 6 5 4 8 8 C 1.37695 * 120.32646 * 359.97438 * 7 6 5 9 9 C 1.40746 * 119.89074 * 0.02562 * 8 7 6 10 10 C 1.41410 * 120.20516 * 179.97438 * 9 8 7 11 11 H 1.07994 * 120.00684 * 24.43005 * 10 9 8 12 12 C 1.39940 * 119.99716 * 204.43594 * 10 9 8 13 13 N 1.30836 * 119.99735 * 17.87600 * 12 10 9 14 14 Si 1.86796 * 119.99804 * 197.88119 * 12 10 9 15 15 H 1.48500 * 109.47211 * 59.99995 * 14 12 10 16 16 H 1.48499 * 109.46776 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47051 * 299.99535 * 14 12 10 18 18 C 1.38272 * 119.95021 * 179.72479 * 5 4 2 19 19 C 1.52996 * 109.46793 * 119.99985 * 2 1 3 20 20 H 1.09000 * 109.47195 * 179.97438 * 19 2 1 21 21 C 1.53000 * 109.47258 * 59.99676 * 19 2 1 22 22 C 1.50702 * 109.47216 * 299.99924 * 19 2 1 23 23 O 1.20824 * 119.99998 * 0.02562 * 22 19 2 24 24 O 1.34231 * 120.00144 * 180.02562 * 22 19 2 25 25 H 1.09008 * 109.46742 * 59.99921 * 1 2 3 26 26 H 1.08999 * 109.47387 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46938 * 300.00438 * 1 2 3 28 28 H 0.97001 * 119.99599 * 265.00223 * 4 2 1 29 29 H 1.08001 * 119.78866 * 359.70641 * 6 5 4 30 30 H 1.08004 * 119.83872 * 180.02562 * 7 6 5 31 31 H 1.07996 * 120.05350 * 179.97438 * 8 7 6 32 32 H 0.96996 * 119.99461 * 180.02562 * 13 12 10 33 33 H 1.08002 * 120.16424 * 0.25446 * 18 5 4 34 34 H 1.09003 * 109.47386 * 179.97438 * 21 19 2 35 35 H 1.08997 * 109.47617 * 300.00102 * 21 19 2 36 36 H 1.09008 * 109.46725 * 60.00390 * 21 19 2 37 37 H 0.96694 * 117.00085 * 179.97438 * 24 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1518 0.0062 -2.3994 6 6 1.8197 1.3580 -2.4609 7 6 1.9537 2.0597 -3.6472 8 6 2.4176 1.4286 -4.7797 9 6 2.7570 0.0635 -4.7327 10 6 3.2335 -0.5914 -5.8919 11 1 3.7077 -0.0219 -6.6775 12 6 3.0905 -1.9774 -6.0212 13 7 2.2316 -2.6191 -5.2713 14 14 4.1261 -2.9113 -7.2640 15 1 5.5652 -2.7270 -6.9474 16 1 3.7868 -4.3558 -7.2052 17 1 3.8490 -2.3934 -8.6280 18 6 2.6182 -0.6452 -3.5264 19 6 2.0400 -0.7212 1.2492 20 1 3.1299 -0.7217 1.2491 21 6 1.5299 -2.1637 1.2493 22 6 1.5376 -0.0108 2.4797 23 8 0.8426 0.9713 2.3688 24 8 1.8622 -0.4691 3.6989 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 2.2490 -1.6318 -1.1525 29 1 1.4552 1.8617 -1.5778 30 1 1.6939 3.1074 -3.6841 31 1 2.5200 1.9800 -5.7026 32 1 2.1328 -3.5799 -5.3607 33 1 2.8759 -1.6930 -3.4799 34 1 1.8935 -2.6777 2.1391 35 1 0.4399 -2.1637 1.2492 36 1 1.8933 -2.6776 0.3593 37 1 1.5168 0.0201 4.4581 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313431670.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:51 Heat of formation + Delta-G solvation = -76.484898 kcal Electronic energy + Delta-G solvation = -19650.555183 eV Core-core repulsion = 16585.157826 eV Total energy + Delta-G solvation = -3065.397357 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.65940 -38.15337 -36.64788 -35.90295 -33.66004 -32.34622 -29.53237 -29.20423 -27.05027 -25.60970 -25.12133 -22.85825 -21.12570 -20.30144 -19.12874 -18.16455 -17.24037 -16.55442 -16.21338 -15.66278 -14.92556 -14.89365 -14.24699 -14.15670 -13.58583 -13.24435 -12.82929 -12.64416 -12.28370 -12.24719 -12.04516 -11.92137 -11.66020 -11.40246 -11.17722 -11.03249 -10.85374 -10.65832 -10.55345 -10.29719 -10.28255 -9.59066 -9.40121 -9.23006 -8.75459 -7.27686 -6.70752 -6.15661 -4.28445 2.09823 2.84565 2.90924 3.10060 3.13758 3.26196 3.36960 3.99466 4.36924 4.58035 4.74373 4.81279 4.99104 5.28998 5.57412 5.60878 5.74747 5.84864 5.94119 5.98886 6.14542 6.29544 6.32518 6.42936 6.63993 6.73464 6.91980 7.14069 7.16777 7.40532 7.45955 7.76969 7.84378 7.99288 8.14244 8.19863 8.51356 8.71281 8.85817 9.03919 9.14673 10.28042 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028340 B = 0.004718 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.762721 B = 5933.181237 C = 6627.834532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.175 3.825 3 H 0.082 0.918 4 N -0.754 5.754 5 C 0.217 3.783 6 C -0.298 4.298 7 C -0.066 4.066 8 C -0.257 4.257 9 C 0.139 3.861 10 C -0.466 4.466 11 H 0.075 0.925 12 C 0.079 3.921 13 N -0.793 5.793 14 Si 0.904 3.096 15 H -0.265 1.265 16 H -0.280 1.280 17 H -0.266 1.266 18 C -0.231 4.231 19 C -0.091 4.091 20 H 0.112 0.888 21 C -0.146 4.146 22 C 0.487 3.513 23 O -0.506 6.506 24 O -0.517 6.517 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.388 0.612 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.087 0.913 32 H 0.277 0.723 33 H 0.117 0.883 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.434 -1.194 13.456 13.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.068 3.932 3 H 0.100 0.900 4 N -0.388 5.388 5 C 0.119 3.881 6 C -0.321 4.321 7 C -0.085 4.085 8 C -0.278 4.278 9 C 0.136 3.864 10 C -0.496 4.496 11 H 0.093 0.907 12 C -0.138 4.138 13 N -0.419 5.419 14 Si 0.729 3.271 15 H -0.189 1.189 16 H -0.205 1.205 17 H -0.191 1.191 18 C -0.254 4.254 19 C -0.111 4.111 20 H 0.130 0.870 21 C -0.204 4.204 22 C 0.329 3.671 23 O -0.393 6.393 24 O -0.329 6.329 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.223 0.777 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.135 0.865 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -0.643 -1.230 13.215 13.288 hybrid contribution 0.198 -0.499 -0.052 0.539 sum -0.446 -1.729 13.163 13.284 Atomic orbital electron populations 1.22564 0.96128 1.01816 1.03288 1.20343 0.93955 0.96240 0.82680 0.90008 1.44475 1.76035 1.11480 1.06859 1.17598 0.94764 0.90876 0.84858 1.19957 1.20510 0.93622 0.98013 1.20297 0.98230 0.96822 0.93152 1.20863 1.13441 0.96547 0.96936 1.17305 0.86688 0.90534 0.91879 1.19524 1.34736 0.91883 1.03450 0.90657 1.25863 0.93656 0.98162 0.96169 1.69864 1.26704 1.09996 1.35322 0.86449 0.81275 0.78172 0.81244 1.18935 1.20498 1.19114 1.20714 1.13300 1.00515 0.90903 1.21302 1.03048 0.96974 0.89803 0.86981 1.21831 1.02206 0.93002 1.03328 1.23381 0.76896 0.82313 0.84549 1.90689 1.35472 1.26203 1.86953 1.84542 1.72392 1.59092 1.16868 0.91752 0.93013 0.90773 0.77688 0.89366 0.89667 0.89444 0.91188 0.86525 0.91388 0.91480 0.90606 0.73418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.83 8.74 37.16 0.32 -2.50 16 2 C 0.17 2.74 1.74 -67.93 -0.12 2.62 16 3 H 0.08 1.42 6.43 -51.93 -0.33 1.09 16 4 N -0.75 -13.84 5.17 -52.22 -0.27 -14.11 16 5 C 0.22 5.00 6.63 -83.86 -0.56 4.45 16 6 C -0.30 -6.85 8.85 -39.09 -0.35 -7.20 16 7 C -0.07 -1.55 10.01 -39.69 -0.40 -1.95 16 8 C -0.26 -6.56 9.79 -38.83 -0.38 -6.94 16 9 C 0.14 3.78 5.57 -106.85 -0.60 3.19 16 10 C -0.47 -12.60 9.05 -37.74 -0.34 -12.94 16 11 H 0.08 1.97 7.91 -52.49 -0.41 1.55 16 12 C 0.08 2.00 5.14 -17.34 -0.09 1.91 16 13 N -0.79 -20.58 10.95 55.55 0.61 -19.97 16 14 Si 0.90 18.84 29.59 -169.99 -5.03 13.81 16 15 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 16 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 17 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 18 C -0.23 -5.97 8.53 -38.68 -0.33 -6.30 16 19 C -0.09 -1.11 2.83 -91.77 -0.26 -1.37 16 20 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 21 C -0.15 -1.54 8.60 37.16 0.32 -1.22 16 22 C 0.49 5.79 7.33 36.01 0.26 6.06 16 23 O -0.51 -7.41 14.42 -18.75 -0.27 -7.68 16 24 O -0.52 -4.57 13.33 -39.26 -0.52 -5.09 16 25 H 0.06 1.15 7.68 -51.92 -0.40 0.75 16 26 H 0.05 0.76 6.43 -51.93 -0.33 0.43 16 27 H 0.07 1.14 5.52 -51.93 -0.29 0.85 16 28 H 0.39 6.62 6.87 -40.82 -0.28 6.34 16 29 H 0.09 1.87 6.06 -52.49 -0.32 1.56 16 30 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 31 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 32 H 0.28 6.57 8.30 -40.82 -0.34 6.23 16 33 H 0.12 3.09 6.15 -52.49 -0.32 2.77 16 34 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 35 H 0.07 0.72 6.43 -51.93 -0.33 0.39 16 36 H 0.08 0.82 6.51 -51.92 -0.34 0.48 16 37 H 0.41 1.86 9.10 45.56 0.41 2.27 16 LS Contribution 303.37 15.07 4.57 4.57 Total: -1.00 -30.15 303.37 -7.19 -37.34 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -3.77 Total: 13.33 kcal Atomic # 6 Polarization: -19.69 SS G_CDS: -2.50 Total: -22.20 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.34 Total: -34.08 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: -0.79 Total: -12.78 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.15 -7.19 -37.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313431670.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.143 kcal (2) G-P(sol) polarization free energy of solvation -30.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds