Wall clock time and date at job start Mon Mar 30 2020 06:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46813 * 2 1 4 4 C 1.50696 * 109.47467 * 120.00106 * 2 1 3 5 5 O 1.20825 * 119.99716 * 119.99920 * 4 2 1 6 6 O 1.34228 * 120.00143 * 299.72676 * 4 2 1 7 7 C 1.53000 * 109.46981 * 240.00280 * 2 1 3 8 8 H 1.09001 * 109.47721 * 299.99982 * 7 2 1 9 9 C 1.53005 * 109.47407 * 179.97438 * 7 2 1 10 10 N 1.46509 * 109.47416 * 59.99573 * 7 2 1 11 11 C 1.39675 * 120.00319 * 204.99937 * 10 7 2 12 12 C 1.39341 * 119.95238 * 0.02562 * 11 10 7 13 13 C 1.38480 * 120.42530 * 180.02562 * 12 11 10 14 14 C 1.37688 * 120.32389 * 359.97438 * 13 12 11 15 15 C 1.40751 * 119.89499 * 0.02562 * 14 13 12 16 16 C 1.41407 * 120.20744 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00124 * 24.32969 * 16 15 14 18 18 C 1.39936 * 119.99708 * 204.32987 * 16 15 14 19 19 N 1.30825 * 120.00033 * 17.73601 * 18 16 15 20 20 Si 1.86805 * 119.99671 * 197.73590 * 18 16 15 21 21 H 1.48500 * 109.46949 * 94.68876 * 20 18 16 22 22 H 1.48490 * 109.46914 * 214.68897 * 20 18 16 23 23 H 1.48499 * 109.47217 * 334.69178 * 20 18 16 24 24 C 1.38284 * 119.95342 * 179.72769 * 11 10 7 25 25 H 1.08994 * 109.47230 * 299.99349 * 1 2 3 26 26 H 1.09000 * 109.47649 * 59.99920 * 1 2 3 27 27 H 1.09007 * 109.47112 * 180.02562 * 1 2 3 28 28 H 0.96697 * 117.00163 * 179.97438 * 6 4 2 29 29 H 1.09004 * 109.46701 * 300.00464 * 9 7 2 30 30 H 1.09001 * 109.46858 * 59.99392 * 9 7 2 31 31 H 1.08993 * 109.47233 * 180.02562 * 9 7 2 32 32 H 0.97000 * 119.99180 * 24.99864 * 10 7 2 33 33 H 1.08003 * 119.78564 * 359.97438 * 12 11 10 34 34 H 1.07996 * 119.83787 * 179.97438 * 13 12 11 35 35 H 1.08001 * 120.05401 * 180.02562 * 14 13 12 36 36 H 0.97009 * 119.99728 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.15672 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7270 -1.6927 1.1194 6 8 1.7127 -0.2487 2.4495 7 6 2.0399 -0.7212 -1.2493 8 1 1.6767 -1.7489 -1.2494 9 6 3.5700 -0.7207 -1.2497 10 7 1.5515 -0.0306 -2.4455 11 6 1.4181 -0.7273 -3.6487 12 6 1.7493 -2.0794 -3.7101 13 6 1.6213 -2.7796 -4.8980 14 6 1.1644 -2.1466 -6.0322 15 6 0.8260 -0.7812 -5.9855 16 6 0.3566 -0.1245 -7.1466 17 1 -0.1122 -0.6928 -7.9362 18 6 0.4995 1.2618 -7.2723 19 7 1.3512 1.9031 -6.5139 20 14 -0.5257 2.1968 -8.5230 21 1 -1.7438 2.7321 -7.8636 22 1 0.2721 3.3205 -9.0761 23 1 -0.9204 1.2811 -9.6234 24 6 0.9517 -0.0759 -4.7758 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 2.0580 -0.7380 3.2088 29 1 3.9329 0.3072 -1.2498 30 1 3.9337 -1.2342 -0.3597 31 1 3.9332 -1.2341 -2.1399 32 1 1.3208 0.9106 -2.4018 33 1 2.1090 -2.5844 -2.8257 34 1 1.8812 -3.8271 -4.9349 35 1 1.0659 -2.6970 -6.9562 36 1 1.4505 2.8641 -6.6014 37 1 0.6897 0.9708 -4.7280 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313431673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:57 Heat of formation + Delta-G solvation = -79.212284 kcal Electronic energy + Delta-G solvation = -19645.276477 eV Core-core repulsion = 16579.760852 eV Total energy + Delta-G solvation = -3065.515625 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.62704 -38.11972 -36.59916 -35.84334 -33.62694 -32.34696 -29.86078 -29.37156 -27.06474 -25.17416 -24.88399 -22.70495 -21.25559 -20.29015 -19.51097 -18.17029 -17.40196 -16.63974 -15.83553 -15.69612 -14.95218 -14.76169 -14.29618 -13.78413 -13.66404 -13.24609 -12.88795 -12.60704 -12.38079 -12.17470 -12.10303 -11.82553 -11.63862 -11.46653 -11.18918 -11.06385 -10.91357 -10.64388 -10.55339 -10.33785 -10.26295 -9.58888 -9.39438 -9.24306 -8.75622 -7.27811 -6.70931 -6.15397 -4.28680 2.09926 2.84240 2.88743 3.11300 3.15423 3.25815 3.36330 3.99519 4.38205 4.56433 4.74202 4.84040 5.02603 5.32019 5.60140 5.69966 5.77598 5.83287 5.90772 6.12574 6.15347 6.29554 6.31512 6.40496 6.63305 6.71527 6.91726 7.13718 7.16747 7.40419 7.45609 7.77013 7.84135 7.99145 8.14045 8.20026 8.51387 8.71038 8.85830 9.03911 9.14513 10.27989 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028625 B = 0.004686 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.931573 B = 5973.374569 C = 6528.190133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.091 4.091 3 H 0.109 0.891 4 C 0.487 3.513 5 O -0.506 6.506 6 O -0.517 6.517 7 C 0.175 3.825 8 H 0.083 0.917 9 C -0.179 4.179 10 N -0.753 5.753 11 C 0.219 3.781 12 C -0.298 4.298 13 C -0.066 4.066 14 C -0.257 4.257 15 C 0.139 3.861 16 C -0.465 4.465 17 H 0.076 0.924 18 C 0.079 3.921 19 N -0.793 5.793 20 Si 0.904 3.096 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.230 4.230 25 H 0.064 0.936 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.407 0.593 29 H 0.047 0.953 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.389 0.611 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.277 0.723 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.467 0.560 13.414 13.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.111 4.111 3 H 0.127 0.873 4 C 0.329 3.671 5 O -0.393 6.393 6 O -0.329 6.329 7 C 0.068 3.932 8 H 0.101 0.899 9 C -0.238 4.238 10 N -0.386 5.386 11 C 0.121 3.879 12 C -0.321 4.321 13 C -0.085 4.085 14 C -0.278 4.278 15 C 0.136 3.864 16 C -0.495 4.495 17 H 0.094 0.906 18 C -0.139 4.139 19 N -0.419 5.419 20 Si 0.729 3.271 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.187 1.187 24 C -0.254 4.254 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.266 0.734 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.222 0.778 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.262 0.585 13.172 13.188 hybrid contribution -0.093 0.570 -0.039 0.578 sum -0.355 1.155 13.133 13.189 Atomic orbital electron populations 1.21741 0.91435 1.03263 1.03417 1.21314 0.98793 1.01195 0.89798 0.87271 1.23369 0.76655 0.82528 0.84556 1.90689 1.35481 1.26221 1.86954 1.84542 1.72602 1.58873 1.16869 1.20391 0.93649 0.96510 0.82648 0.89928 1.22531 0.96165 1.01685 1.03385 1.44381 1.75993 1.11398 1.06853 1.17576 0.94721 0.90848 0.84790 1.19958 1.20583 0.93628 0.97922 1.20295 0.98253 0.96826 0.93135 1.20866 1.13504 0.96522 0.96880 1.17314 0.86667 0.90529 0.91919 1.19569 1.34904 0.91846 1.03222 0.90610 1.25861 0.93618 0.98182 0.96200 1.69872 1.26823 1.09907 1.35299 0.86380 0.80445 0.79263 0.81061 1.19492 1.20455 1.18658 1.20717 1.13294 1.00569 0.90838 0.91652 0.90152 0.92016 0.73417 0.93391 0.90733 0.91627 0.77786 0.89393 0.89678 0.89454 0.91261 0.86535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 8.97 37.16 0.33 -1.26 16 2 C -0.09 -1.11 2.47 -91.77 -0.23 -1.33 16 3 H 0.11 1.17 8.14 -51.93 -0.42 0.75 16 4 C 0.49 5.82 7.33 36.00 0.26 6.08 16 5 O -0.51 -7.43 14.42 -18.75 -0.27 -7.70 16 6 O -0.52 -4.59 13.33 -39.25 -0.52 -5.12 16 7 C 0.17 2.73 1.49 -67.92 -0.10 2.63 16 8 H 0.08 1.44 6.43 -51.93 -0.33 1.10 16 9 C -0.18 -2.84 9.10 37.16 0.34 -2.50 16 10 N -0.75 -13.66 4.55 -52.21 -0.24 -13.90 16 11 C 0.22 4.99 6.63 -83.86 -0.56 4.44 16 12 C -0.30 -6.81 8.86 -39.08 -0.35 -7.15 16 13 C -0.07 -1.55 10.02 -39.69 -0.40 -1.95 16 14 C -0.26 -6.53 9.79 -38.83 -0.38 -6.91 16 15 C 0.14 3.76 5.57 -106.85 -0.60 3.17 16 16 C -0.47 -12.56 9.05 -37.74 -0.34 -12.90 16 17 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 18 C 0.08 1.99 5.14 -17.34 -0.09 1.90 16 19 N -0.79 -20.57 10.96 55.55 0.61 -19.96 16 20 Si 0.90 18.84 29.60 -169.99 -5.03 13.81 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.03 16 24 C -0.23 -5.93 8.53 -38.67 -0.33 -6.26 16 25 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 26 H 0.08 0.97 7.45 -51.93 -0.39 0.58 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.41 1.87 9.10 45.56 0.41 2.29 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.15 5.52 -51.93 -0.29 0.86 16 31 H 0.06 1.17 7.70 -51.93 -0.40 0.77 16 32 H 0.39 6.56 8.39 -40.82 -0.34 6.22 16 33 H 0.09 1.86 6.08 -52.48 -0.32 1.54 16 34 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 35 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.28 6.53 8.30 -40.82 -0.34 6.20 16 37 H 0.12 3.07 6.17 -52.49 -0.32 2.75 16 LS Contribution 308.82 15.07 4.65 4.65 Total: -1.00 -30.00 308.82 -7.29 -37.29 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -4.06 Total: 12.98 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: -2.43 Total: -22.04 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.37 Total: -33.86 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.79 Total: -12.82 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.00 -7.29 -37.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313431673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.923 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds