Wall clock time and date at job start Mon Mar 30 2020 06:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.46813 * 2 1 4 4 C 1.50696 * 109.47467 * 120.00106 * 2 1 3 5 5 O 1.20825 * 119.99716 * 119.99920 * 4 2 1 6 6 O 1.34228 * 120.00143 * 299.72676 * 4 2 1 7 7 C 1.53000 * 109.46981 * 240.00280 * 2 1 3 8 8 H 1.09001 * 109.47721 * 299.99982 * 7 2 1 9 9 C 1.53005 * 109.47407 * 179.97438 * 7 2 1 10 10 N 1.46509 * 109.47416 * 59.99573 * 7 2 1 11 11 C 1.39675 * 120.00319 * 204.99937 * 10 7 2 12 12 C 1.39341 * 119.95238 * 0.02562 * 11 10 7 13 13 C 1.38480 * 120.42530 * 180.02562 * 12 11 10 14 14 C 1.37688 * 120.32389 * 359.97438 * 13 12 11 15 15 C 1.40751 * 119.89499 * 0.02562 * 14 13 12 16 16 C 1.41407 * 120.20744 * 179.97438 * 15 14 13 17 17 H 1.07993 * 120.00124 * 24.32969 * 16 15 14 18 18 C 1.39936 * 119.99708 * 204.32987 * 16 15 14 19 19 N 1.30825 * 120.00033 * 17.73601 * 18 16 15 20 20 Si 1.86805 * 119.99671 * 197.73590 * 18 16 15 21 21 H 1.48500 * 109.46949 * 94.68876 * 20 18 16 22 22 H 1.48490 * 109.46914 * 214.68897 * 20 18 16 23 23 H 1.48499 * 109.47217 * 334.69178 * 20 18 16 24 24 C 1.38284 * 119.95342 * 179.72769 * 11 10 7 25 25 H 1.08994 * 109.47230 * 299.99349 * 1 2 3 26 26 H 1.09000 * 109.47649 * 59.99920 * 1 2 3 27 27 H 1.09007 * 109.47112 * 180.02562 * 1 2 3 28 28 H 0.96697 * 117.00163 * 179.97438 * 6 4 2 29 29 H 1.09004 * 109.46701 * 300.00464 * 9 7 2 30 30 H 1.09001 * 109.46858 * 59.99392 * 9 7 2 31 31 H 1.08993 * 109.47233 * 180.02562 * 9 7 2 32 32 H 0.97000 * 119.99180 * 24.99864 * 10 7 2 33 33 H 1.08003 * 119.78564 * 359.97438 * 12 11 10 34 34 H 1.07996 * 119.83787 * 179.97438 * 13 12 11 35 35 H 1.08001 * 120.05401 * 180.02562 * 14 13 12 36 36 H 0.97009 * 119.99728 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.15672 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7270 -1.6927 1.1194 6 8 1.7127 -0.2487 2.4495 7 6 2.0399 -0.7212 -1.2493 8 1 1.6767 -1.7489 -1.2494 9 6 3.5700 -0.7207 -1.2497 10 7 1.5515 -0.0306 -2.4455 11 6 1.4181 -0.7273 -3.6487 12 6 1.7493 -2.0794 -3.7101 13 6 1.6213 -2.7796 -4.8980 14 6 1.1644 -2.1466 -6.0322 15 6 0.8260 -0.7812 -5.9855 16 6 0.3566 -0.1245 -7.1466 17 1 -0.1122 -0.6928 -7.9362 18 6 0.4995 1.2618 -7.2723 19 7 1.3512 1.9031 -6.5139 20 14 -0.5257 2.1968 -8.5230 21 1 -1.7438 2.7321 -7.8636 22 1 0.2721 3.3205 -9.0761 23 1 -0.9204 1.2811 -9.6234 24 6 0.9517 -0.0759 -4.7758 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 2.0580 -0.7380 3.2088 29 1 3.9329 0.3072 -1.2498 30 1 3.9337 -1.2342 -0.3597 31 1 3.9332 -1.2341 -2.1399 32 1 1.3208 0.9106 -2.4018 33 1 2.1090 -2.5844 -2.8257 34 1 1.8812 -3.8271 -4.9349 35 1 1.0659 -2.6970 -6.9562 36 1 1.4505 2.8641 -6.6014 37 1 0.6897 0.9708 -4.7280 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313431673.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:57 Heat of formation + Delta-G solvation = -97.649452 kcal Electronic energy + Delta-G solvation = -19646.075972 eV Core-core repulsion = 16579.760852 eV Total energy + Delta-G solvation = -3066.315121 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59911 -39.75765 -37.87025 -36.95775 -35.43248 -33.81334 -31.38952 -31.08314 -28.74901 -27.09240 -25.85835 -23.96880 -23.00708 -21.83498 -20.93841 -19.28702 -18.87893 -18.04496 -17.32901 -16.67844 -16.58040 -16.44695 -15.87104 -15.17378 -14.90400 -14.49879 -14.34134 -14.18689 -13.96190 -13.79932 -13.33203 -13.11474 -13.03055 -12.76905 -12.70687 -12.51714 -12.36024 -12.21747 -12.03606 -11.73875 -11.54706 -11.36019 -11.18624 -11.06212 -10.50641 -9.23154 -8.60037 -7.90331 -6.29846 1.10052 1.17691 1.35097 1.40873 1.53758 1.60147 1.94047 2.25279 2.82388 2.97860 3.46425 3.80268 3.91197 4.06734 4.38454 4.42344 4.51447 4.57516 4.77554 4.81405 4.84555 4.93420 4.99544 5.07338 5.22281 5.24773 5.30225 5.32789 5.48381 5.61869 5.66956 5.98043 6.12134 6.23679 6.27172 6.59682 6.95186 7.00108 7.06664 7.08688 7.27904 8.40579 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028625 B = 0.004686 C = 0.004288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.931573 B = 5973.374569 C = 6528.190133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.086 4.086 3 H 0.130 0.870 4 C 0.497 3.503 5 O -0.538 6.538 6 O -0.505 6.505 7 C 0.175 3.825 8 H 0.066 0.934 9 C -0.172 4.172 10 N -0.741 5.741 11 C 0.228 3.772 12 C -0.303 4.303 13 C -0.064 4.064 14 C -0.285 4.285 15 C 0.109 3.891 16 C -0.504 4.504 17 H 0.070 0.930 18 C 0.040 3.960 19 N -0.821 5.821 20 Si 0.979 3.021 21 H -0.262 1.262 22 H -0.268 1.268 23 H -0.262 1.262 24 C -0.255 4.255 25 H 0.088 0.912 26 H 0.070 0.930 27 H 0.052 0.948 28 H 0.429 0.571 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.040 0.960 32 H 0.396 0.604 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.285 0.715 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.754 1.479 14.993 15.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.106 4.106 3 H 0.148 0.852 4 C 0.340 3.660 5 O -0.428 6.428 6 O -0.319 6.319 7 C 0.069 3.931 8 H 0.085 0.915 9 C -0.231 4.231 10 N -0.374 5.374 11 C 0.127 3.873 12 C -0.326 4.326 13 C -0.083 4.083 14 C -0.306 4.306 15 C 0.106 3.894 16 C -0.534 4.534 17 H 0.088 0.912 18 C -0.175 4.175 19 N -0.447 5.447 20 Si 0.800 3.200 21 H -0.186 1.186 22 H -0.193 1.193 23 H -0.186 1.186 24 C -0.279 4.279 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.291 0.709 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.059 0.941 32 H 0.231 0.769 33 H 0.124 0.876 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.542 1.513 14.820 14.907 hybrid contribution 0.054 0.243 -0.360 0.437 sum -0.488 1.756 14.461 14.575 Atomic orbital electron populations 1.21714 0.90654 1.02949 1.04118 1.21179 0.99293 1.01711 0.88403 0.85187 1.23117 0.75883 0.81721 0.85286 1.90690 1.37063 1.27570 1.87505 1.84476 1.72097 1.58717 1.16606 1.20438 0.93560 0.95980 0.83148 0.91549 1.22453 0.96098 1.02042 1.02473 1.44374 1.74990 1.11683 1.06303 1.17618 0.92926 0.91081 0.85641 1.20228 1.20157 0.93750 0.98439 1.20624 0.96872 0.98240 0.92576 1.21006 1.15266 0.96426 0.97897 1.17704 0.87323 0.91595 0.92727 1.19805 1.36680 0.93294 1.03641 0.91204 1.26667 0.94213 0.98368 0.98245 1.69917 1.27543 1.10626 1.36598 0.85253 0.78729 0.77757 0.78279 1.18630 1.19283 1.18580 1.20651 1.15446 1.00172 0.91677 0.89292 0.91104 0.92854 0.70901 0.92407 0.89991 0.94113 0.76931 0.87603 0.86844 0.89382 0.90402 0.87790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.97 71.98 0.65 -2.13 16 2 C -0.09 -1.88 2.47 -11.54 -0.03 -1.91 16 3 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.50 10.53 7.33 71.23 0.52 11.06 16 5 O -0.54 -14.76 14.42 21.97 0.32 -14.45 16 6 O -0.51 -7.18 13.33 -51.40 -0.69 -7.86 16 7 C 0.17 5.22 1.49 44.99 0.07 5.29 16 8 H 0.07 2.24 6.43 -2.39 -0.02 2.22 16 9 C -0.17 -5.24 9.10 71.98 0.66 -4.59 16 10 N -0.74 -26.38 4.55 -319.09 -1.45 -27.84 16 11 C 0.23 10.46 6.63 38.17 0.25 10.72 16 12 C -0.30 -13.74 8.86 22.59 0.20 -13.54 16 13 C -0.06 -3.01 10.02 22.20 0.22 -2.79 16 14 C -0.29 -14.89 9.79 22.75 0.22 -14.67 16 15 C 0.11 6.14 5.57 -21.31 -0.12 6.02 16 16 C -0.50 -28.17 9.05 23.46 0.21 -27.96 16 17 H 0.07 3.81 7.91 -2.91 -0.02 3.79 16 18 C 0.04 2.05 5.14 85.25 0.44 2.49 16 19 N -0.82 -43.20 10.96 21.82 0.24 -42.96 16 20 Si 0.98 38.82 29.60 68.60 2.03 40.86 16 21 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 22 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 23 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 24 C -0.26 -13.49 8.53 22.86 0.20 -13.29 16 25 H 0.09 1.40 8.12 -2.39 -0.02 1.38 16 26 H 0.07 1.59 7.45 -2.39 -0.02 1.57 16 27 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.43 2.40 9.10 -74.06 -0.67 1.73 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.08 2.41 5.52 -2.39 -0.01 2.40 16 31 H 0.04 1.42 7.70 -2.39 -0.02 1.41 16 32 H 0.40 13.03 8.39 -92.71 -0.78 12.25 16 33 H 0.11 4.38 6.08 -2.91 -0.02 4.36 16 34 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 35 H 0.09 4.41 8.06 -2.91 -0.02 4.39 16 36 H 0.29 13.52 8.30 -92.70 -0.77 12.75 16 37 H 0.10 5.66 6.17 -2.91 -0.02 5.64 16 Total: -1.00 -65.83 308.82 3.59 -62.24 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: -0.35 Total: 35.30 kcal Atomic # 6 Polarization: -48.78 SS G_CDS: 3.49 Total: -45.29 kcal Atomic # 7 Polarization: -69.58 SS G_CDS: -1.21 Total: -70.79 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.37 Total: -22.31 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 2.03 Total: 40.86 kcal Total: -65.83 3.59 -62.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313431673.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.406 kcal (2) G-P(sol) polarization free energy of solvation -65.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds