Wall clock time and date at job start Mon Mar 30 2020 07:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45199 * 109.47151 * 2 1 4 4 C 1.34228 * 116.99906 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00259 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00083 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.47375 * 179.97438 * 6 4 3 8 8 N 1.46494 * 109.47223 * 180.02562 * 7 6 4 9 9 C 1.39688 * 120.00203 * 180.02562 * 8 7 6 10 10 C 1.39337 * 119.94697 * 359.97369 * 9 8 7 11 11 C 1.38486 * 120.42167 * 180.02562 * 10 9 8 12 12 C 1.37681 * 120.32339 * 359.97438 * 11 10 9 13 13 C 1.40752 * 119.89949 * 0.04507 * 12 11 10 14 14 C 1.41405 * 120.21104 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99991 * 24.35696 * 14 13 12 16 16 C 1.39935 * 119.99607 * 204.36141 * 14 13 12 17 17 N 1.30827 * 120.00201 * 17.83180 * 16 14 13 18 18 Si 1.86796 * 119.99610 * 197.83202 * 16 14 13 19 19 H 1.48501 * 109.47197 * 60.00065 * 18 16 14 20 20 H 1.48497 * 109.47271 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47562 * 299.99846 * 18 16 14 22 22 C 1.38282 * 119.95529 * 180.02562 * 9 8 7 23 23 H 1.08998 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46717 * 299.99760 * 1 2 3 25 25 H 1.09000 * 109.47533 * 59.99669 * 1 2 3 26 26 H 1.09004 * 109.46717 * 240.00240 * 2 1 3 27 27 H 1.08997 * 109.47080 * 120.00147 * 2 1 3 28 28 H 1.09003 * 109.46973 * 59.99644 * 6 4 3 29 29 H 1.08997 * 109.47585 * 300.00115 * 6 4 3 30 30 H 1.08998 * 109.46693 * 60.00129 * 7 6 4 31 31 H 1.09005 * 109.47024 * 300.00360 * 7 6 4 32 32 H 0.96998 * 119.99993 * 359.97438 * 8 7 6 33 33 H 1.07995 * 119.78946 * 0.02562 * 10 9 8 34 34 H 1.07997 * 119.83404 * 180.02562 * 11 10 9 35 35 H 1.08001 * 120.05321 * 179.97438 * 12 11 10 36 36 H 0.97003 * 119.99955 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.15732 * 359.69223 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 6 5.4487 2.8573 -0.0010 8 7 6.0086 4.2110 -0.0010 9 6 7.3935 4.3941 -0.0015 10 6 8.2412 3.2883 -0.0014 11 6 9.6156 3.4584 -0.0013 12 6 10.1595 4.7232 -0.0018 13 6 9.3157 5.8498 -0.0015 14 6 9.8672 7.1519 -0.0015 15 1 10.8623 7.3168 -0.3874 16 6 9.1236 8.2266 0.4987 17 7 8.0913 8.0046 1.2711 18 14 9.6051 9.9782 0.0635 19 1 9.5466 10.1562 -1.4096 20 1 8.6650 10.9261 0.7138 21 1 10.9861 10.2450 0.5399 22 6 7.9210 5.6723 -0.0009 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.5851 3.4698 0.8888 29 1 3.5846 3.4693 -0.8911 30 1 5.7846 2.3248 -0.8908 31 1 5.7846 2.3255 0.8892 32 1 5.4178 4.9802 -0.0015 33 1 7.8239 2.2922 -0.0014 34 1 10.2639 2.5946 -0.0016 35 1 11.2319 4.8508 -0.0013 36 1 7.5761 8.7497 1.6181 37 1 7.2647 6.5301 -0.0052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313432531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:46 Heat of formation + Delta-G solvation = -77.680382 kcal Electronic energy + Delta-G solvation = -18665.297238 eV Core-core repulsion = 15599.848041 eV Total energy + Delta-G solvation = -3065.449197 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.60687 -37.87248 -36.89893 -35.21856 -33.38661 -32.17206 -31.04421 -29.39841 -27.42147 -25.20067 -24.28327 -22.84110 -21.26083 -20.45927 -19.85890 -17.90149 -17.15482 -16.96569 -16.36357 -15.63310 -15.14023 -14.78303 -14.66209 -14.08518 -13.86324 -13.49904 -13.07802 -12.81517 -12.49222 -12.31245 -12.21301 -11.92658 -11.90004 -11.65525 -11.42120 -11.04006 -10.95303 -10.76599 -10.59350 -10.53380 -10.39381 -9.60754 -9.42179 -9.21706 -8.74665 -7.27802 -6.70502 -6.16561 -4.28088 2.09424 2.44174 2.90996 3.10462 3.14175 3.26000 3.37089 3.99781 4.24691 4.62446 4.62924 4.69668 4.75296 4.94128 4.97671 5.01134 5.34597 5.45757 5.45936 5.65649 5.83844 6.07735 6.12450 6.27490 6.32229 6.65220 6.90468 7.13064 7.16771 7.39401 7.45679 7.61838 7.82580 7.99235 8.13378 8.19810 8.50885 8.70173 8.85288 9.03925 9.14421 10.28420 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031893 B = 0.003445 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.723444 B = 8125.807803 C = 8905.174260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.060 3.940 3 O -0.361 6.361 4 C 0.468 3.532 5 O -0.504 6.504 6 C -0.125 4.125 7 C 0.149 3.851 8 N -0.762 5.762 9 C 0.214 3.786 10 C -0.298 4.298 11 C -0.066 4.066 12 C -0.256 4.256 13 C 0.138 3.862 14 C -0.465 4.465 15 H 0.076 0.924 16 C 0.078 3.922 17 N -0.793 5.793 18 Si 0.905 3.095 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.266 1.266 22 C -0.229 4.229 23 H 0.079 0.921 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.390 0.610 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.277 0.723 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.040 -8.446 -1.735 16.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.278 6.278 4 C 0.310 3.690 5 O -0.391 6.391 6 C -0.163 4.163 7 C 0.024 3.976 8 N -0.397 5.397 9 C 0.116 3.884 10 C -0.320 4.320 11 C -0.085 4.085 12 C -0.277 4.277 13 C 0.135 3.865 14 C -0.495 4.495 15 H 0.094 0.906 16 C -0.139 4.139 17 N -0.419 5.419 18 Si 0.730 3.270 19 H -0.189 1.189 20 H -0.205 1.205 21 H -0.191 1.191 22 C -0.253 4.253 23 H 0.097 0.903 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.223 0.777 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.020 -8.853 -1.585 16.657 hybrid contribution -0.082 0.888 -0.045 0.893 sum -14.102 -7.965 -1.630 16.278 Atomic orbital electron populations 1.21808 0.92642 1.02937 1.03559 1.23024 0.95329 0.80287 1.02694 1.86506 1.24722 1.32388 1.84212 1.23583 0.80428 0.92678 0.72265 1.90697 1.60286 1.43214 1.44899 1.21554 0.97310 0.91088 1.06357 1.20757 0.88367 0.86455 1.02064 1.44298 1.04356 1.04817 1.86257 1.17603 0.81334 0.94277 0.95151 1.19939 0.93204 0.95252 1.23636 1.20297 0.93803 0.95795 0.98616 1.20870 0.97580 0.92459 1.16778 1.17318 0.90944 0.92248 0.86035 1.19516 1.01684 0.91670 1.36619 0.90619 1.25872 0.94092 1.01358 0.92621 1.69860 1.15596 1.33816 1.22629 0.86435 0.79310 0.81420 0.79883 1.18943 1.20502 1.19109 1.20715 0.95771 0.93160 1.15674 0.90265 0.91449 0.91455 0.91192 0.91180 0.87122 0.87184 0.92312 0.92294 0.77656 0.89465 0.89574 0.89363 0.91170 0.86468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.29 37.16 0.38 -0.56 16 2 C 0.06 0.54 6.19 37.16 0.23 0.77 16 3 O -0.36 -4.07 10.22 -39.25 -0.40 -4.47 16 4 C 0.47 6.03 7.96 36.01 0.29 6.31 16 5 O -0.50 -7.98 15.73 -18.75 -0.29 -8.27 16 6 C -0.13 -1.46 5.93 -27.88 -0.17 -1.63 16 7 C 0.15 2.37 4.20 -4.05 -0.02 2.35 16 8 N -0.76 -14.30 5.73 -58.69 -0.34 -14.64 16 9 C 0.21 5.06 6.64 -83.85 -0.56 4.50 16 10 C -0.30 -6.99 9.32 -39.08 -0.36 -7.36 16 11 C -0.07 -1.58 10.02 -39.69 -0.40 -1.97 16 12 C -0.26 -6.59 9.79 -38.84 -0.38 -6.97 16 13 C 0.14 3.78 5.57 -106.85 -0.60 3.18 16 14 C -0.46 -12.62 9.05 -37.74 -0.34 -12.96 16 15 H 0.08 1.98 7.91 -52.49 -0.41 1.56 16 16 C 0.08 1.98 5.14 -17.34 -0.09 1.89 16 17 N -0.79 -20.65 10.95 55.55 0.61 -20.04 16 18 Si 0.90 18.90 29.59 -169.99 -5.03 13.87 16 19 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 C -0.23 -6.01 8.53 -38.67 -0.33 -6.34 16 23 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 24 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 27 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 28 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.99 7.90 -51.93 -0.41 0.58 16 31 H 0.06 1.02 7.90 -51.93 -0.41 0.61 16 32 H 0.39 6.63 8.48 -40.82 -0.35 6.29 16 33 H 0.09 1.90 6.70 -52.49 -0.35 1.55 16 34 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 35 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 36 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 37 H 0.12 3.13 6.16 -52.49 -0.32 2.81 16 LS Contribution 318.60 15.07 4.80 4.80 Total: -1.00 -30.40 318.60 -8.19 -38.59 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -5.20 Total: 8.94 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -2.34 Total: -18.77 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.27 Total: -34.68 kcal Atomic # 8 Polarization: -12.05 SS G_CDS: -0.70 Total: -12.74 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.40 -8.19 -38.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313432531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.094 kcal (2) G-P(sol) polarization free energy of solvation -30.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds