Wall clock time and date at job start Mon Mar 30 2020 07:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45199 * 109.47151 * 2 1 4 4 C 1.34228 * 116.99906 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00259 * 359.97438 * 4 3 2 6 6 C 1.50702 * 120.00083 * 179.97438 * 4 3 2 7 7 C 1.52998 * 109.47375 * 179.97438 * 6 4 3 8 8 N 1.46494 * 109.47223 * 180.02562 * 7 6 4 9 9 C 1.39688 * 120.00203 * 180.02562 * 8 7 6 10 10 C 1.39337 * 119.94697 * 359.97369 * 9 8 7 11 11 C 1.38486 * 120.42167 * 180.02562 * 10 9 8 12 12 C 1.37681 * 120.32339 * 359.97438 * 11 10 9 13 13 C 1.40752 * 119.89949 * 0.04507 * 12 11 10 14 14 C 1.41405 * 120.21104 * 179.97438 * 13 12 11 15 15 H 1.07998 * 119.99991 * 24.35696 * 14 13 12 16 16 C 1.39935 * 119.99607 * 204.36141 * 14 13 12 17 17 N 1.30827 * 120.00201 * 17.83180 * 16 14 13 18 18 Si 1.86796 * 119.99610 * 197.83202 * 16 14 13 19 19 H 1.48501 * 109.47197 * 60.00065 * 18 16 14 20 20 H 1.48497 * 109.47271 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47562 * 299.99846 * 18 16 14 22 22 C 1.38282 * 119.95529 * 180.02562 * 9 8 7 23 23 H 1.08998 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46717 * 299.99760 * 1 2 3 25 25 H 1.09000 * 109.47533 * 59.99669 * 1 2 3 26 26 H 1.09004 * 109.46717 * 240.00240 * 2 1 3 27 27 H 1.08997 * 109.47080 * 120.00147 * 2 1 3 28 28 H 1.09003 * 109.46973 * 59.99644 * 6 4 3 29 29 H 1.08997 * 109.47585 * 300.00115 * 6 4 3 30 30 H 1.08998 * 109.46693 * 60.00129 * 7 6 4 31 31 H 1.09005 * 109.47024 * 300.00360 * 7 6 4 32 32 H 0.96998 * 119.99993 * 359.97438 * 8 7 6 33 33 H 1.07995 * 119.78946 * 0.02562 * 10 9 8 34 34 H 1.07997 * 119.83404 * 180.02562 * 11 10 9 35 35 H 1.08001 * 120.05321 * 179.97438 * 12 11 10 36 36 H 0.97003 * 119.99955 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.15732 * 359.69223 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 6 5.4487 2.8573 -0.0010 8 7 6.0086 4.2110 -0.0010 9 6 7.3935 4.3941 -0.0015 10 6 8.2412 3.2883 -0.0014 11 6 9.6156 3.4584 -0.0013 12 6 10.1595 4.7232 -0.0018 13 6 9.3157 5.8498 -0.0015 14 6 9.8672 7.1519 -0.0015 15 1 10.8623 7.3168 -0.3874 16 6 9.1236 8.2266 0.4987 17 7 8.0913 8.0046 1.2711 18 14 9.6051 9.9782 0.0635 19 1 9.5466 10.1562 -1.4096 20 1 8.6650 10.9261 0.7138 21 1 10.9861 10.2450 0.5399 22 6 7.9210 5.6723 -0.0009 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8899 28 1 3.5851 3.4698 0.8888 29 1 3.5846 3.4693 -0.8911 30 1 5.7846 2.3248 -0.8908 31 1 5.7846 2.3255 0.8892 32 1 5.4178 4.9802 -0.0015 33 1 7.8239 2.2922 -0.0014 34 1 10.2639 2.5946 -0.0016 35 1 11.2319 4.8508 -0.0013 36 1 7.5761 8.7497 1.6181 37 1 7.2647 6.5301 -0.0052 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313432531.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:46 Heat of formation + Delta-G solvation = -94.815315 kcal Electronic energy + Delta-G solvation = -18666.040265 eV Core-core repulsion = 15599.848041 eV Total energy + Delta-G solvation = -3066.192223 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.60345 -39.65067 -37.94055 -36.79285 -35.22992 -33.09407 -32.20347 -31.34024 -29.03785 -27.13423 -25.45012 -23.77696 -22.87647 -21.82573 -21.55731 -19.24299 -18.67034 -17.89290 -17.78610 -17.07449 -16.53086 -16.38805 -16.11986 -15.76099 -14.88296 -14.68854 -14.50269 -14.15750 -14.01607 -13.64385 -13.58261 -13.19519 -12.94316 -12.85151 -12.74328 -12.58948 -12.49435 -12.33464 -12.07778 -11.67808 -11.55156 -11.49998 -11.31642 -11.05755 -10.52098 -9.25419 -8.60575 -7.94721 -6.30449 1.09354 1.09876 1.32725 1.41067 1.51834 1.52646 1.61190 2.25206 2.80979 2.87795 3.57098 3.85667 3.91560 3.98399 4.05015 4.07565 4.33916 4.42136 4.51676 4.77072 4.82594 4.84454 4.86109 4.92112 4.98881 5.13546 5.21831 5.29401 5.41968 5.44324 5.59930 5.95414 6.09720 6.21849 6.23618 6.56899 6.65095 6.92894 7.03637 7.06835 7.25249 8.39974 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.031893 B = 0.003445 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.723444 B = 8125.807803 C = 8905.174260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.051 3.949 3 O -0.359 6.359 4 C 0.473 3.527 5 O -0.539 6.539 6 C -0.114 4.114 7 C 0.151 3.849 8 N -0.752 5.752 9 C 0.219 3.781 10 C -0.306 4.306 11 C -0.064 4.064 12 C -0.284 4.284 13 C 0.107 3.893 14 C -0.503 4.503 15 H 0.072 0.928 16 C 0.038 3.962 17 N -0.820 5.820 18 Si 0.980 3.020 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.262 1.262 22 C -0.255 4.255 23 H 0.099 0.901 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.399 0.601 33 H 0.105 0.895 34 H 0.116 0.884 35 H 0.091 0.909 36 H 0.286 0.714 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.666 -8.298 -1.890 17.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.317 3.683 5 O -0.429 6.429 6 C -0.151 4.151 7 C 0.026 3.974 8 N -0.386 5.386 9 C 0.118 3.882 10 C -0.329 4.329 11 C -0.083 4.083 12 C -0.304 4.304 13 C 0.104 3.896 14 C -0.533 4.533 15 H 0.090 0.910 16 C -0.177 4.177 17 N -0.445 5.445 18 Si 0.801 3.199 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.186 1.186 22 C -0.279 4.279 23 H 0.118 0.882 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.150 0.850 29 H 0.153 0.847 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.234 0.766 33 H 0.123 0.877 34 H 0.134 0.866 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.701 -8.722 -1.736 18.045 hybrid contribution 0.337 0.700 0.023 0.777 sum -15.364 -8.022 -1.713 17.417 Atomic orbital electron populations 1.21828 0.90275 1.04404 1.03788 1.23322 0.97172 0.79130 1.02612 1.86503 1.23597 1.33844 1.83635 1.23690 0.80787 0.92526 0.71270 1.90690 1.61137 1.44352 1.46751 1.21437 0.94038 0.91052 1.08613 1.20758 0.91296 0.84387 1.00989 1.44300 1.02778 1.06599 1.84888 1.17696 0.83568 0.93457 0.93448 1.20228 0.93305 0.96057 1.23276 1.20638 0.94546 0.96086 0.97012 1.21029 0.97775 0.93088 1.18538 1.17735 0.92021 0.93146 0.86699 1.19773 1.02280 0.92811 1.38401 0.91005 1.26709 0.93821 1.05387 0.91806 1.69905 1.16311 1.35535 1.22798 0.85291 0.79231 0.75783 0.79570 1.18645 1.19036 1.18645 1.20661 0.95398 0.93898 1.17924 0.88194 0.91229 0.91164 0.91296 0.91377 0.84998 0.84728 0.93175 0.93565 0.76562 0.87655 0.86615 0.89100 0.90303 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.29 71.98 0.74 -0.74 16 2 C 0.05 0.84 6.19 71.98 0.45 1.28 16 3 O -0.36 -7.42 10.22 -51.39 -0.53 -7.94 16 4 C 0.47 11.42 7.96 71.24 0.57 11.99 16 5 O -0.54 -16.66 15.73 21.96 0.35 -16.32 16 6 C -0.11 -2.40 5.93 29.85 0.18 -2.22 16 7 C 0.15 4.58 4.20 86.38 0.36 4.94 16 8 N -0.75 -27.42 5.73 -339.58 -1.95 -29.36 16 9 C 0.22 10.31 6.64 38.16 0.25 10.56 16 10 C -0.31 -14.19 9.32 22.59 0.21 -13.98 16 11 C -0.06 -3.03 10.02 22.20 0.22 -2.81 16 12 C -0.28 -14.89 9.79 22.75 0.22 -14.66 16 13 C 0.11 6.05 5.57 -21.31 -0.12 5.93 16 14 C -0.50 -28.09 9.05 23.46 0.21 -27.88 16 15 H 0.07 3.89 7.91 -2.91 -0.02 3.87 16 16 C 0.04 1.94 5.14 85.25 0.44 2.38 16 17 N -0.82 -43.08 10.95 21.82 0.24 -42.84 16 18 Si 0.98 38.73 29.59 68.60 2.03 40.76 16 19 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 20 H -0.27 -9.82 7.11 99.48 0.71 -9.11 16 21 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 22 C -0.25 -13.63 8.53 22.86 0.19 -13.43 16 23 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 24 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 25 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.07 1.15 8.13 -2.38 -0.02 1.13 16 27 H 0.07 1.15 8.13 -2.39 -0.02 1.13 16 28 H 0.13 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.05 1.64 7.90 -2.39 -0.02 1.62 16 31 H 0.05 1.55 7.90 -2.38 -0.02 1.53 16 32 H 0.40 13.06 8.48 -92.71 -0.79 12.27 16 33 H 0.11 4.45 6.70 -2.91 -0.02 4.43 16 34 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 35 H 0.09 4.55 8.06 -2.91 -0.02 4.52 16 36 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 37 H 0.11 5.79 6.16 -2.91 -0.02 5.77 16 Total: -1.00 -66.55 318.60 4.36 -62.19 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.28 Total: 32.14 kcal Atomic # 6 Polarization: -42.56 SS G_CDS: 3.93 Total: -38.63 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -1.71 Total: -72.21 kcal Atomic # 8 Polarization: -24.08 SS G_CDS: -0.18 Total: -24.26 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 2.03 Total: 40.76 kcal Total: -66.55 4.36 -62.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313432531.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.625 kcal (2) G-P(sol) polarization free energy of solvation -66.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds