Wall clock time and date at job start Mon Mar 30 2020 06:41:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46867 * 2 1 4 4 H 1.09001 * 109.47187 * 55.53264 * 3 2 1 5 5 N 1.46502 * 109.46953 * 295.52981 * 3 2 1 6 6 C 1.39678 * 119.99955 * 156.01635 * 5 3 2 7 7 C 1.39343 * 119.95308 * 358.20148 * 6 5 3 8 8 C 1.38474 * 120.42839 * 179.72523 * 7 6 5 9 9 C 1.37692 * 120.32150 * 359.97438 * 8 7 6 10 10 C 1.40748 * 119.89498 * 0.02562 * 9 8 7 11 11 C 1.41411 * 120.20716 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99684 * 208.13664 * 11 10 9 13 13 C 1.39927 * 119.99927 * 28.13487 * 11 10 9 14 14 N 1.30831 * 120.00182 * 14.64831 * 13 11 10 15 15 Si 1.86802 * 120.00095 * 194.64014 * 13 11 10 16 16 H 1.48499 * 109.46947 * 60.00226 * 15 13 11 17 17 H 1.48498 * 109.46985 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47166 * 300.00646 * 15 13 11 19 19 C 1.38276 * 119.95377 * 177.93546 * 6 5 3 20 20 C 1.50703 * 109.46829 * 175.53320 * 3 2 1 21 21 O 1.20823 * 120.00225 * 120.00017 * 20 3 2 22 22 O 1.34228 * 119.99698 * 299.99473 * 20 3 2 23 23 C 1.45203 * 116.99816 * 180.02562 * 22 20 3 24 24 H 1.09002 * 109.47047 * 185.20752 * 1 2 3 25 25 H 1.09003 * 109.47439 * 305.21172 * 1 2 3 26 26 H 1.08998 * 109.46883 * 65.21460 * 1 2 3 27 27 H 1.09000 * 109.47373 * 240.00045 * 2 1 3 28 28 H 1.09001 * 109.47322 * 119.99394 * 2 1 3 29 29 H 0.97000 * 119.99744 * 336.00917 * 5 3 2 30 30 H 1.08000 * 119.78402 * 359.75302 * 7 6 5 31 31 H 1.07999 * 119.84148 * 180.02562 * 8 7 6 32 32 H 1.08000 * 120.05285 * 179.97438 * 9 8 7 33 33 H 0.96998 * 120.00491 * 179.97438 * 14 13 11 34 34 H 1.08000 * 120.16195 * 0.25151 * 19 6 5 35 35 H 1.08995 * 109.47232 * 300.00443 * 23 22 20 36 36 H 1.09009 * 109.46902 * 60.00446 * 23 22 20 37 37 H 1.09000 * 109.47073 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6127 1.9790 0.8473 5 7 1.6414 2.1014 -1.2464 6 6 1.5301 3.4928 -1.2962 7 6 1.7618 4.2508 -0.1502 8 6 1.6597 5.6312 -0.1898 9 6 1.3284 6.2703 -1.3635 10 6 1.0915 5.5180 -2.5293 11 6 0.7502 6.1675 -3.7381 12 1 0.1478 5.6563 -4.4743 13 6 1.1930 7.4726 -3.9803 14 7 2.1433 7.9883 -3.2436 15 14 0.4275 8.4785 -5.3557 16 1 -1.0277 8.6344 -5.1041 17 1 1.0680 9.8174 -5.4052 18 1 0.6341 7.7832 -6.6515 19 6 1.1956 4.1166 -2.4841 20 6 3.5429 1.4440 0.1107 21 8 4.2125 1.9441 -0.7620 22 8 4.1377 0.8898 1.1788 23 6 5.5887 0.9280 1.2189 24 1 -0.3633 -1.0234 0.0933 25 1 -0.3634 0.5926 0.8396 26 1 -0.3633 0.4308 -0.9330 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.4550 1.5712 -2.0370 30 1 2.0231 3.7585 0.7749 31 1 1.8417 6.2094 0.7040 32 1 1.2496 7.3471 -1.3894 33 1 2.4505 8.8929 -3.4117 34 1 1.0160 3.5302 -3.3731 35 1 5.9901 0.4006 0.3536 36 1 5.9255 1.9646 1.2011 37 1 5.9396 0.4480 2.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313476394.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:19 Heat of formation + Delta-G solvation = -69.602997 kcal Electronic energy + Delta-G solvation = -19637.606400 eV Core-core repulsion = 16572.507465 eV Total energy + Delta-G solvation = -3065.098935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.32758 -37.97024 -36.37856 -35.63865 -33.61971 -31.94933 -29.76107 -28.75474 -27.51476 -25.76592 -25.14038 -22.29688 -21.16010 -20.65537 -19.69747 -17.55219 -17.35892 -16.55871 -16.12810 -15.50768 -15.28175 -14.87177 -14.45359 -13.76676 -13.72571 -13.28756 -12.81983 -12.71422 -12.51956 -12.15043 -12.09118 -11.89311 -11.65479 -11.30970 -11.18574 -10.99973 -10.95914 -10.68200 -10.62119 -10.39107 -10.13349 -9.78224 -9.29425 -9.23958 -8.80959 -7.34061 -6.65474 -6.28339 -4.28821 2.50396 2.78119 2.90745 3.12137 3.15215 3.25901 3.42167 3.99535 4.08571 4.71444 4.76016 4.94659 5.03603 5.16048 5.23250 5.34293 5.51711 5.61287 5.67531 5.84788 5.86386 6.01568 6.25025 6.30063 6.48729 6.56792 6.95991 7.03855 7.15565 7.33231 7.36392 7.72327 7.90078 8.05805 8.15273 8.23422 8.50536 8.53005 8.79269 9.02333 9.11974 10.32154 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027811 B = 0.004759 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.541798 B = 5881.853276 C = 6344.245032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.175 3.825 4 H 0.114 0.886 5 N -0.732 5.732 6 C 0.224 3.776 7 C -0.296 4.296 8 C -0.076 4.076 9 C -0.191 4.191 10 C 0.142 3.858 11 C -0.467 4.467 12 H 0.075 0.925 13 C 0.077 3.923 14 N -0.797 5.797 15 Si 0.908 3.092 16 H -0.264 1.264 17 H -0.279 1.279 18 H -0.267 1.267 19 C -0.277 4.277 20 C 0.431 3.569 21 O -0.483 6.483 22 O -0.368 6.368 23 C 0.035 3.965 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.395 0.605 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.279 0.721 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.318 -12.407 7.323 14.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.065 3.935 4 H 0.131 0.869 5 N -0.365 5.365 6 C 0.127 3.873 7 C -0.319 4.319 8 C -0.095 4.095 9 C -0.212 4.212 10 C 0.139 3.861 11 C -0.497 4.497 12 H 0.093 0.907 13 C -0.140 4.140 14 N -0.423 5.423 15 Si 0.732 3.268 16 H -0.189 1.189 17 H -0.204 1.204 18 H -0.191 1.191 19 C -0.300 4.300 20 C 0.269 3.731 21 O -0.368 6.368 22 O -0.285 6.285 23 C -0.059 4.059 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.103 0.897 29 H 0.229 0.771 30 H 0.098 0.902 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.757 -12.021 7.243 14.055 hybrid contribution 0.230 0.433 -0.967 1.084 sum 0.987 -11.588 6.276 13.215 Atomic orbital electron populations 1.21725 0.94091 1.01543 1.03111 1.21730 0.97515 0.93494 1.03404 1.20330 0.85468 0.95662 0.92077 0.86864 1.44199 1.76959 1.04522 1.10840 1.17403 0.94748 0.80851 0.94293 1.19815 1.22390 0.93956 0.95740 1.20415 0.98957 0.93236 0.96857 1.21152 1.08792 0.99595 0.91629 1.17334 0.86188 0.89972 0.92562 1.19495 1.29710 0.97858 1.02621 0.90670 1.25869 0.93273 0.97813 0.97079 1.69839 1.20496 1.15637 1.36282 0.86389 0.80323 0.78683 0.81364 1.18909 1.20445 1.19145 1.20419 1.19798 0.95022 0.94777 1.25366 0.93600 0.74782 0.79323 1.90696 1.65823 1.40384 1.39850 1.86516 1.23156 1.73433 1.45358 1.23174 0.77385 1.02734 1.02656 0.92518 0.92168 0.91869 0.91313 0.89737 0.77092 0.90156 0.89589 0.86889 0.91035 0.89124 0.92337 0.92050 0.88554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.73 37.16 0.36 -1.12 16 2 C -0.12 -1.35 5.43 -26.73 -0.15 -1.49 16 3 C 0.17 2.63 2.20 -69.08 -0.15 2.48 16 4 H 0.11 1.70 6.45 -51.93 -0.34 1.36 16 5 N -0.73 -13.23 4.31 -53.33 -0.23 -13.46 16 6 C 0.22 5.14 6.49 -83.86 -0.54 4.59 16 7 C -0.30 -6.91 9.18 -39.08 -0.36 -7.27 16 8 C -0.08 -1.86 10.02 -39.69 -0.40 -2.26 16 9 C -0.19 -5.19 8.66 -38.83 -0.34 -5.53 16 10 C 0.14 3.94 5.54 -106.85 -0.59 3.35 16 11 C -0.47 -12.81 9.05 -37.74 -0.34 -13.15 16 12 H 0.08 1.97 7.89 -52.49 -0.41 1.56 16 13 C 0.08 2.00 5.18 -17.35 -0.09 1.91 16 14 N -0.80 -21.52 11.01 55.55 0.61 -20.91 16 15 Si 0.91 19.26 29.58 -169.99 -5.03 14.24 16 16 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 17 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 19 C -0.28 -7.03 9.63 -38.68 -0.37 -7.40 16 20 C 0.43 7.28 7.19 36.01 0.26 7.54 16 21 O -0.48 -10.19 16.08 -18.75 -0.30 -10.50 16 22 O -0.37 -5.20 10.38 -39.25 -0.41 -5.61 16 23 C 0.03 0.40 10.56 101.05 1.07 1.46 16 24 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.71 7.88 -51.93 -0.41 0.30 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.08 0.80 8.01 -51.93 -0.42 0.38 16 29 H 0.39 6.52 8.60 -40.82 -0.35 6.17 16 30 H 0.08 1.69 6.17 -52.49 -0.32 1.37 16 31 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 32 H 0.11 3.15 6.31 -52.49 -0.33 2.82 16 33 H 0.28 6.87 8.30 -40.82 -0.34 6.54 16 34 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 35 H 0.06 0.66 8.13 -51.93 -0.42 0.23 16 36 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 316.09 15.07 4.76 4.76 Total: -1.00 -31.54 316.09 -7.33 -38.87 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -5.10 Total: 9.49 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: -1.64 Total: -16.89 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: 0.38 Total: -34.38 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.71 Total: -16.11 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.03 Total: 14.24 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.54 -7.33 -38.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313476394.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.728 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds