Wall clock time and date at job start Mon Mar 30 2020 06:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.46867 * 2 1 4 4 H 1.09001 * 109.47187 * 55.53264 * 3 2 1 5 5 N 1.46502 * 109.46953 * 295.52981 * 3 2 1 6 6 C 1.39678 * 119.99955 * 156.01635 * 5 3 2 7 7 C 1.39343 * 119.95308 * 358.20148 * 6 5 3 8 8 C 1.38474 * 120.42839 * 179.72523 * 7 6 5 9 9 C 1.37692 * 120.32150 * 359.97438 * 8 7 6 10 10 C 1.40748 * 119.89498 * 0.02562 * 9 8 7 11 11 C 1.41411 * 120.20716 * 179.97438 * 10 9 8 12 12 H 1.07997 * 119.99684 * 208.13664 * 11 10 9 13 13 C 1.39927 * 119.99927 * 28.13487 * 11 10 9 14 14 N 1.30831 * 120.00182 * 14.64831 * 13 11 10 15 15 Si 1.86802 * 120.00095 * 194.64014 * 13 11 10 16 16 H 1.48499 * 109.46947 * 60.00226 * 15 13 11 17 17 H 1.48498 * 109.46985 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47166 * 300.00646 * 15 13 11 19 19 C 1.38276 * 119.95377 * 177.93546 * 6 5 3 20 20 C 1.50703 * 109.46829 * 175.53320 * 3 2 1 21 21 O 1.20823 * 120.00225 * 120.00017 * 20 3 2 22 22 O 1.34228 * 119.99698 * 299.99473 * 20 3 2 23 23 C 1.45203 * 116.99816 * 180.02562 * 22 20 3 24 24 H 1.09002 * 109.47047 * 185.20752 * 1 2 3 25 25 H 1.09003 * 109.47439 * 305.21172 * 1 2 3 26 26 H 1.08998 * 109.46883 * 65.21460 * 1 2 3 27 27 H 1.09000 * 109.47373 * 240.00045 * 2 1 3 28 28 H 1.09001 * 109.47322 * 119.99394 * 2 1 3 29 29 H 0.97000 * 119.99744 * 336.00917 * 5 3 2 30 30 H 1.08000 * 119.78402 * 359.75302 * 7 6 5 31 31 H 1.07999 * 119.84148 * 180.02562 * 8 7 6 32 32 H 1.08000 * 120.05285 * 179.97438 * 9 8 7 33 33 H 0.96998 * 120.00491 * 179.97438 * 14 13 11 34 34 H 1.08000 * 120.16195 * 0.25151 * 19 6 5 35 35 H 1.08995 * 109.47232 * 300.00443 * 23 22 20 36 36 H 1.09009 * 109.46902 * 60.00446 * 23 22 20 37 37 H 1.09000 * 109.47073 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6127 1.9790 0.8473 5 7 1.6414 2.1014 -1.2464 6 6 1.5301 3.4928 -1.2962 7 6 1.7618 4.2508 -0.1502 8 6 1.6597 5.6312 -0.1898 9 6 1.3284 6.2703 -1.3635 10 6 1.0915 5.5180 -2.5293 11 6 0.7502 6.1675 -3.7381 12 1 0.1478 5.6563 -4.4743 13 6 1.1930 7.4726 -3.9803 14 7 2.1433 7.9883 -3.2436 15 14 0.4275 8.4785 -5.3557 16 1 -1.0277 8.6344 -5.1041 17 1 1.0680 9.8174 -5.4052 18 1 0.6341 7.7832 -6.6515 19 6 1.1956 4.1166 -2.4841 20 6 3.5429 1.4440 0.1107 21 8 4.2125 1.9441 -0.7620 22 8 4.1377 0.8898 1.1788 23 6 5.5887 0.9280 1.2189 24 1 -0.3633 -1.0234 0.0933 25 1 -0.3634 0.5926 0.8396 26 1 -0.3633 0.4308 -0.9330 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.4550 1.5712 -2.0370 30 1 2.0231 3.7585 0.7749 31 1 1.8417 6.2094 0.7040 32 1 1.2496 7.3471 -1.3894 33 1 2.4505 8.8929 -3.4117 34 1 1.0160 3.5302 -3.3731 35 1 5.9901 0.4006 0.3536 36 1 5.9255 1.9646 1.2011 37 1 5.9396 0.4480 2.1325 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313476394.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:18 Heat of formation + Delta-G solvation = -88.146969 kcal Electronic energy + Delta-G solvation = -19638.410527 eV Core-core repulsion = 16572.507465 eV Total energy + Delta-G solvation = -3065.903062 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.64383 -39.67708 -37.80398 -37.04179 -35.40600 -33.42920 -31.71675 -29.99661 -28.91863 -27.24440 -26.91152 -23.39204 -22.78359 -22.46655 -21.21477 -19.30661 -18.71113 -17.83612 -17.58222 -17.14528 -16.85436 -16.43833 -16.16371 -15.11534 -14.84817 -14.63081 -14.39559 -14.33434 -13.96358 -13.68374 -13.51380 -13.20830 -12.97245 -12.80242 -12.78026 -12.62947 -12.19586 -12.07188 -11.86724 -11.79087 -11.67595 -11.57928 -11.22701 -11.07773 -10.57702 -9.33844 -8.59597 -8.07340 -6.34961 1.02891 1.18840 1.24768 1.38475 1.50679 1.55637 1.79002 2.23222 2.64239 2.81617 3.66111 3.79458 3.92340 3.99333 4.29558 4.31011 4.41048 4.45503 4.55006 4.65547 4.69435 4.84565 5.07977 5.09427 5.10997 5.15651 5.21862 5.35072 5.37717 5.46324 5.52493 5.85404 5.96667 6.15923 6.24663 6.56300 6.74256 6.85097 6.92998 7.00541 7.16912 8.39915 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.027811 B = 0.004759 C = 0.004412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.541798 B = 5881.853276 C = 6344.245032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.170 3.830 4 H 0.120 0.880 5 N -0.724 5.724 6 C 0.236 3.764 7 C -0.300 4.300 8 C -0.077 4.077 9 C -0.224 4.224 10 C 0.113 3.887 11 C -0.504 4.504 12 H 0.074 0.926 13 C 0.034 3.966 14 N -0.832 5.832 15 Si 0.985 3.015 16 H -0.258 1.258 17 H -0.268 1.268 18 H -0.261 1.261 19 C -0.301 4.301 20 C 0.435 3.565 21 O -0.534 6.534 22 O -0.359 6.359 23 C 0.027 3.973 24 H 0.080 0.920 25 H 0.059 0.941 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.108 0.892 29 H 0.402 0.598 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.095 0.905 33 H 0.286 0.714 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.048 0.952 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.133 -14.071 8.297 16.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C 0.061 3.939 4 H 0.137 0.863 5 N -0.356 5.356 6 C 0.136 3.864 7 C -0.322 4.322 8 C -0.096 4.096 9 C -0.245 4.245 10 C 0.111 3.889 11 C -0.534 4.534 12 H 0.093 0.907 13 C -0.180 4.180 14 N -0.458 5.458 15 Si 0.805 3.195 16 H -0.182 1.182 17 H -0.192 1.192 18 H -0.185 1.185 19 C -0.325 4.325 20 C 0.276 3.724 21 O -0.422 6.422 22 O -0.274 6.274 23 C -0.066 4.066 24 H 0.099 0.901 25 H 0.078 0.922 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.127 0.873 29 H 0.238 0.762 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.067 0.933 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 0.575 -13.752 8.259 16.052 hybrid contribution 0.384 0.777 -1.109 1.408 sum 0.959 -12.975 7.150 14.846 Atomic orbital electron populations 1.21722 0.93316 1.02967 1.02281 1.21744 0.97978 0.90440 1.04864 1.20696 0.84629 0.98113 0.90508 0.86283 1.44213 1.76055 1.02774 1.12572 1.17443 0.92543 0.83120 0.93268 1.20113 1.21616 0.93611 0.96900 1.20712 0.97756 0.94248 0.96856 1.21085 1.11709 0.98882 0.92782 1.17708 0.86866 0.91266 0.93097 1.19786 1.31110 0.99450 1.03087 0.90738 1.26783 0.93156 0.98359 0.99742 1.69915 1.21533 1.16278 1.38075 0.85226 0.79405 0.77065 0.77774 1.18228 1.19247 1.18486 1.20554 1.21190 0.94622 0.96091 1.25601 0.94132 0.73646 0.79037 1.90692 1.66988 1.42784 1.41707 1.86499 1.24783 1.72403 1.43741 1.23499 0.75639 1.02543 1.04925 0.90125 0.92226 0.93375 0.90731 0.87322 0.76233 0.87538 0.87319 0.88701 0.90376 0.88879 0.92258 0.93343 0.84314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.73 71.98 0.70 -1.80 16 2 C -0.11 -2.09 5.43 30.60 0.17 -1.92 16 3 C 0.17 4.72 2.20 44.25 0.10 4.82 16 4 H 0.12 3.24 6.45 -2.39 -0.02 3.22 16 5 N -0.72 -25.42 4.31 -322.65 -1.39 -26.81 16 6 C 0.24 10.80 6.49 38.17 0.25 11.05 16 7 C -0.30 -13.78 9.18 22.59 0.21 -13.57 16 8 C -0.08 -3.82 10.02 22.20 0.22 -3.59 16 9 C -0.22 -12.61 8.66 22.75 0.20 -12.42 16 10 C 0.11 6.54 5.54 -21.31 -0.12 6.42 16 11 C -0.50 -28.78 9.05 23.46 0.21 -28.56 16 12 H 0.07 4.07 7.89 -2.91 -0.02 4.05 16 13 C 0.03 1.79 5.18 85.25 0.44 2.23 16 14 N -0.83 -46.35 11.01 21.82 0.24 -46.11 16 15 Si 0.98 40.08 29.58 68.60 2.03 42.11 16 16 H -0.26 -10.15 7.11 99.48 0.71 -9.44 16 17 H -0.27 -10.30 7.11 99.48 0.71 -9.60 16 18 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 19 C -0.30 -15.71 9.63 22.86 0.22 -15.49 16 20 C 0.43 13.91 7.19 71.24 0.51 14.42 16 21 O -0.53 -22.21 16.08 21.97 0.35 -21.85 16 22 O -0.36 -9.16 10.38 -51.39 -0.53 -9.70 16 23 C 0.03 0.56 10.56 113.37 1.20 1.76 16 24 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 25 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 0.98 7.88 -2.39 -0.02 0.96 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.11 1.57 8.01 -2.39 -0.02 1.55 16 29 H 0.40 12.93 8.60 -92.71 -0.80 12.13 16 30 H 0.11 4.27 6.17 -2.91 -0.02 4.25 16 31 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 32 H 0.09 5.57 6.31 -2.91 -0.02 5.55 16 33 H 0.29 14.43 8.30 -92.71 -0.77 13.66 16 34 H 0.09 4.64 8.06 -2.91 -0.02 4.62 16 35 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 36 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.14 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -70.86 316.09 5.28 -65.58 By element: Atomic # 1 Polarization: 33.16 SS G_CDS: 0.28 Total: 33.44 kcal Atomic # 6 Polarization: -40.96 SS G_CDS: 4.30 Total: -36.66 kcal Atomic # 7 Polarization: -71.77 SS G_CDS: -1.15 Total: -72.92 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.18 Total: -31.55 kcal Atomic # 14 Polarization: 40.08 SS G_CDS: 2.03 Total: 42.11 kcal Total: -70.86 5.28 -65.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313476394.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.566 kcal (2) G-P(sol) polarization free energy of solvation -70.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds