Wall clock time and date at job start Mon Mar 30 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47435 * 2 1 4 4 C 1.50700 * 109.47337 * 239.99930 * 2 1 3 5 5 H 1.08000 * 120.00001 * 237.00954 * 4 2 1 6 6 C 1.37875 * 119.99726 * 57.00453 * 4 2 1 7 7 N 1.31510 * 120.00351 * 5.54999 * 6 4 2 8 8 Si 1.86806 * 119.99980 * 185.53971 * 6 4 2 9 9 H 1.48508 * 109.46581 * 85.00261 * 8 6 4 10 10 H 1.48495 * 109.47397 * 205.00112 * 8 6 4 11 11 H 1.48497 * 109.47262 * 325.00732 * 8 6 4 12 12 C 1.53002 * 109.47081 * 120.00051 * 2 1 3 13 13 N 1.46500 * 109.47150 * 299.99793 * 12 2 1 14 14 C 1.34775 * 120.00068 * 179.97438 * 13 12 2 15 15 O 1.21587 * 120.00106 * 0.02562 * 14 13 12 16 16 C 1.47603 * 119.99924 * 180.02562 * 14 13 12 17 17 C 1.39742 * 120.08562 * 179.97438 * 16 14 13 18 18 C 1.37702 * 119.90754 * 180.02562 * 17 16 14 19 19 C 1.38990 * 120.08881 * 0.02562 * 18 17 16 20 20 O 1.35714 * 119.91148 * 179.97438 * 19 18 17 21 21 C 1.38998 * 120.17977 * 0.25836 * 19 18 17 22 22 C 1.37705 * 120.08849 * 359.44323 * 21 19 18 23 23 H 1.08999 * 109.47181 * 293.93545 * 1 2 3 24 24 H 1.09000 * 109.47320 * 53.93388 * 1 2 3 25 25 H 1.09003 * 109.47437 * 173.93499 * 1 2 3 26 26 H 1.08999 * 109.47410 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46771 * 300.00141 * 3 2 1 28 28 H 1.09007 * 109.46534 * 59.99618 * 3 2 1 29 29 H 0.96997 * 120.00526 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47035 * 179.97438 * 12 2 1 31 31 H 1.09003 * 109.47284 * 60.00224 * 12 2 1 32 32 H 0.96994 * 119.99899 * 0.02562 * 13 12 2 33 33 H 1.07998 * 120.04138 * 359.97438 * 17 16 14 34 34 H 1.07995 * 119.95359 * 180.02562 * 18 17 16 35 35 H 0.96700 * 113.99932 * 89.99771 * 20 19 18 36 36 H 1.07997 * 119.95735 * 179.72906 * 21 19 18 37 37 H 1.07990 * 120.05070 * 180.27632 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6925 -1.5595 -1.1321 6 6 1.6491 -0.2765 -2.4817 7 7 0.9351 0.8208 -2.6071 8 14 2.1442 -1.2470 -3.9991 9 1 1.1619 -2.3362 -4.2323 10 1 2.1708 -0.3439 -5.1776 11 1 3.4932 -1.8328 -3.7937 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.5758 -1.4800 3.7811 16 6 1.3843 0.2041 4.8747 17 6 1.7199 -0.2724 6.1448 18 6 1.2581 0.3790 7.2666 19 6 0.4587 1.5087 7.1369 20 8 0.0050 2.1476 8.2450 21 6 0.1178 1.9823 5.8754 22 6 0.5806 1.3402 4.7485 23 1 -0.3633 0.4169 0.9393 24 1 -0.3634 0.6050 -0.8307 25 1 -0.3634 -1.0219 -0.1086 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 0.6658 1.1264 -3.4874 30 1 3.1299 -0.7217 1.2490 31 1 1.6766 -1.7490 1.2492 32 1 0.9937 0.7578 2.3564 33 1 2.3400 -1.1508 6.2463 34 1 1.5173 0.0117 8.2485 35 1 0.5947 2.8430 8.5671 36 1 -0.5071 2.8578 5.7788 37 1 0.3191 1.7114 3.7687 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315897996.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:30 Heat of formation + Delta-G solvation = -62.247395 kcal Electronic energy + Delta-G solvation = -19404.275177 eV Core-core repulsion = 16339.495204 eV Total energy + Delta-G solvation = -3064.779972 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.22487 -38.92562 -36.76564 -36.20074 -33.41433 -31.37581 -30.90238 -29.87979 -25.76197 -25.74606 -25.06684 -23.28790 -22.69972 -20.33712 -18.94434 -18.62229 -17.72819 -16.11236 -15.81924 -15.61616 -14.98814 -14.78206 -14.72228 -14.50086 -13.77077 -13.43536 -12.99341 -12.93465 -12.56361 -12.22353 -12.17261 -12.11674 -11.43598 -11.21585 -10.87861 -10.71256 -10.68216 -10.41064 -10.23330 -9.69166 -9.65625 -9.30517 -9.23719 -8.86517 -8.81984 -8.46166 -8.31904 -6.04387 -4.13256 0.67676 1.16891 2.91747 3.28254 3.34762 3.37954 3.65884 3.77766 3.97289 4.39227 4.65856 4.74846 4.97547 5.14667 5.22930 5.33265 5.52047 5.79417 6.02400 6.14383 6.17467 6.28968 6.29911 6.47252 6.53290 6.74587 6.78025 6.90287 6.97495 6.98901 7.32252 7.35455 7.52860 7.68024 7.96674 7.99196 8.11716 8.35641 8.62133 8.86990 9.52331 10.97732 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043794 B = 0.003949 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.205687 B = 7089.555880 C = 7532.845229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.055 3.945 3 C -0.130 4.130 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.885 5.885 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.131 3.869 13 N -0.710 5.710 14 C 0.546 3.454 15 O -0.549 6.549 16 C -0.135 4.135 17 C -0.047 4.047 18 C -0.155 4.155 19 C 0.122 3.878 20 O -0.500 6.500 21 C -0.152 4.152 22 C -0.070 4.070 23 H 0.006 0.994 24 H 0.082 0.918 25 H 0.030 0.970 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.004 0.996 29 H 0.260 0.740 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.397 0.603 33 H 0.140 0.860 34 H 0.133 0.867 35 H 0.392 0.608 36 H 0.134 0.866 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.479 4.894 16.192 16.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.054 3.946 3 C -0.188 4.188 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.200 1.200 12 C 0.009 3.991 13 N -0.360 5.360 14 C 0.332 3.668 15 O -0.429 6.429 16 C -0.138 4.138 17 C -0.066 4.066 18 C -0.174 4.174 19 C 0.077 3.923 20 O -0.310 6.310 21 C -0.171 4.171 22 C -0.089 4.089 23 H 0.024 0.976 24 H 0.101 0.899 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.023 0.977 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.234 0.766 33 H 0.158 0.842 34 H 0.151 0.849 35 H 0.249 0.751 36 H 0.152 0.848 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -1.535 3.921 16.013 16.557 hybrid contribution 0.289 0.256 -0.833 0.918 sum -1.246 4.177 15.180 15.793 Atomic orbital electron populations 1.21812 0.97691 1.00260 0.98933 1.18372 0.92805 0.92788 0.90598 1.21857 0.98673 0.98293 0.99984 1.20961 1.29424 1.14386 0.89896 0.92381 1.24871 0.94950 0.94762 0.98806 1.69817 1.37827 1.21381 1.23321 0.86592 0.79058 0.79915 0.82335 1.20611 1.21333 1.19952 1.21765 0.98287 0.95912 0.83184 1.46274 1.52184 1.31622 1.05933 1.18182 0.80828 0.84287 0.83463 1.90747 1.38712 1.26447 1.86960 1.20221 1.01579 0.97546 0.94442 1.21180 0.96456 0.98593 0.90336 1.21386 0.99296 0.97185 0.99508 1.18700 0.94479 0.93113 0.85999 1.84761 1.49591 1.53811 1.42873 1.21351 1.02359 1.01800 0.91555 1.21292 0.94851 0.93724 0.99000 0.97554 0.89941 0.95091 0.95371 0.89516 0.97679 0.92986 0.92479 0.92451 0.76628 0.84174 0.84883 0.75115 0.84805 0.84906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.88 8.03 37.15 0.30 -2.58 16 2 C 0.06 1.26 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.89 8.11 37.16 0.30 -2.59 16 4 C -0.51 -13.22 8.01 -34.44 -0.28 -13.50 16 5 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 6 C 0.07 1.77 5.13 -17.82 -0.09 1.67 16 7 N -0.89 -23.37 9.45 55.43 0.52 -22.85 16 8 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 12 C 0.13 2.77 4.50 -4.04 -0.02 2.75 16 13 N -0.71 -12.74 4.85 -61.32 -0.30 -13.04 16 14 C 0.55 9.78 7.76 -12.44 -0.10 9.68 16 15 O -0.55 -11.61 16.34 5.29 0.09 -11.52 16 16 C -0.13 -1.93 5.88 -104.95 -0.62 -2.54 16 17 C -0.05 -0.59 9.59 -39.22 -0.38 -0.97 16 18 C -0.16 -1.64 9.97 -39.50 -0.39 -2.04 16 19 C 0.12 1.26 6.71 -39.02 -0.26 1.00 16 20 O -0.50 -4.32 13.49 -18.85 -0.25 -4.57 16 21 C -0.15 -1.59 9.97 -39.49 -0.39 -1.99 16 22 C -0.07 -0.84 9.53 -39.22 -0.37 -1.21 16 23 H 0.01 0.11 6.71 -51.93 -0.35 -0.24 16 24 H 0.08 2.01 6.25 -51.93 -0.32 1.69 16 25 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 2.13 6.10 -51.93 -0.32 1.81 16 28 H 0.00 0.08 6.86 -51.93 -0.36 -0.27 16 29 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 31 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.40 6.37 4.18 -40.82 -0.17 6.20 16 33 H 0.14 1.78 7.64 -52.49 -0.40 1.37 16 34 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.39 1.42 9.06 45.56 0.41 1.83 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.13 1.44 6.39 -52.49 -0.34 1.10 16 LS Contribution 306.63 15.07 4.62 4.62 Total: -1.00 -29.99 306.63 -6.64 -36.63 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -3.92 Total: 6.27 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -2.38 Total: -11.13 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.23 Total: -35.89 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: -0.17 Total: -16.10 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -29.99 -6.64 -36.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315897996.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.618 kcal (2) G-P(sol) polarization free energy of solvation -29.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds