Wall clock time and date at job start Mon Mar 30 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53007 * 109.47435 * 2 1 4 4 C 1.50700 * 109.47337 * 239.99930 * 2 1 3 5 5 H 1.08000 * 120.00001 * 237.00954 * 4 2 1 6 6 C 1.37875 * 119.99726 * 57.00453 * 4 2 1 7 7 N 1.31510 * 120.00351 * 5.54999 * 6 4 2 8 8 Si 1.86806 * 119.99980 * 185.53971 * 6 4 2 9 9 H 1.48508 * 109.46581 * 85.00261 * 8 6 4 10 10 H 1.48495 * 109.47397 * 205.00112 * 8 6 4 11 11 H 1.48497 * 109.47262 * 325.00732 * 8 6 4 12 12 C 1.53002 * 109.47081 * 120.00051 * 2 1 3 13 13 N 1.46500 * 109.47150 * 299.99793 * 12 2 1 14 14 C 1.34775 * 120.00068 * 179.97438 * 13 12 2 15 15 O 1.21587 * 120.00106 * 0.02562 * 14 13 12 16 16 C 1.47603 * 119.99924 * 180.02562 * 14 13 12 17 17 C 1.39742 * 120.08562 * 179.97438 * 16 14 13 18 18 C 1.37702 * 119.90754 * 180.02562 * 17 16 14 19 19 C 1.38990 * 120.08881 * 0.02562 * 18 17 16 20 20 O 1.35714 * 119.91148 * 179.97438 * 19 18 17 21 21 C 1.38998 * 120.17977 * 0.25836 * 19 18 17 22 22 C 1.37705 * 120.08849 * 359.44323 * 21 19 18 23 23 H 1.08999 * 109.47181 * 293.93545 * 1 2 3 24 24 H 1.09000 * 109.47320 * 53.93388 * 1 2 3 25 25 H 1.09003 * 109.47437 * 173.93499 * 1 2 3 26 26 H 1.08999 * 109.47410 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.46771 * 300.00141 * 3 2 1 28 28 H 1.09007 * 109.46534 * 59.99618 * 3 2 1 29 29 H 0.96997 * 120.00526 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47035 * 179.97438 * 12 2 1 31 31 H 1.09003 * 109.47284 * 60.00224 * 12 2 1 32 32 H 0.96994 * 119.99899 * 0.02562 * 13 12 2 33 33 H 1.07998 * 120.04138 * 359.97438 * 17 16 14 34 34 H 1.07995 * 119.95359 * 180.02562 * 18 17 16 35 35 H 0.96700 * 113.99932 * 89.99771 * 20 19 18 36 36 H 1.07997 * 119.95735 * 179.72906 * 21 19 18 37 37 H 1.07990 * 120.05070 * 180.27632 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6925 -1.5595 -1.1321 6 6 1.6491 -0.2765 -2.4817 7 7 0.9351 0.8208 -2.6071 8 14 2.1442 -1.2470 -3.9991 9 1 1.1619 -2.3362 -4.2323 10 1 2.1708 -0.3439 -5.1776 11 1 3.4932 -1.8328 -3.7937 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.5758 -1.4800 3.7811 16 6 1.3843 0.2041 4.8747 17 6 1.7199 -0.2724 6.1448 18 6 1.2581 0.3790 7.2666 19 6 0.4587 1.5087 7.1369 20 8 0.0050 2.1476 8.2450 21 6 0.1178 1.9823 5.8754 22 6 0.5806 1.3402 4.7485 23 1 -0.3633 0.4169 0.9393 24 1 -0.3634 0.6050 -0.8307 25 1 -0.3634 -1.0219 -0.1086 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 0.6658 1.1264 -3.4874 30 1 3.1299 -0.7217 1.2490 31 1 1.6766 -1.7490 1.2492 32 1 0.9937 0.7578 2.3564 33 1 2.3400 -1.1508 6.2463 34 1 1.5173 0.0117 8.2485 35 1 0.5947 2.8430 8.5671 36 1 -0.5071 2.8578 5.7788 37 1 0.3191 1.7114 3.7687 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315897996.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:30 Heat of formation + Delta-G solvation = -82.265676 kcal Electronic energy + Delta-G solvation = -19405.143235 eV Core-core repulsion = 16339.495204 eV Total energy + Delta-G solvation = -3065.648030 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.34463 -40.05902 -38.20222 -37.36338 -35.09595 -32.94340 -31.97963 -30.97458 -27.57716 -27.49656 -26.84167 -24.38313 -23.63143 -21.64034 -20.65184 -19.46751 -19.01625 -17.79518 -17.17074 -16.66692 -16.41514 -16.23210 -16.02481 -15.75194 -14.91507 -14.74368 -14.61362 -14.47386 -13.97467 -13.62910 -13.29598 -13.11379 -13.04288 -12.97003 -12.68947 -12.60636 -12.25070 -12.14472 -11.49496 -11.44923 -11.32921 -10.98019 -10.71419 -10.39791 -10.09958 -10.07745 -9.64215 -8.03243 -6.17619 -0.27614 0.31470 1.43172 1.45876 1.53278 1.78009 2.24563 2.48892 2.75503 3.20732 3.20948 3.75693 3.83809 3.94768 4.28752 4.39156 4.45584 4.49428 4.67292 4.74133 4.96938 4.97534 5.03638 5.09271 5.16943 5.17856 5.30872 5.32558 5.35899 5.54755 5.66207 5.68010 5.71693 6.12776 6.19889 6.42264 6.60166 6.83670 6.85715 7.21973 7.49686 8.96372 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.043794 B = 0.003949 C = 0.003716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.205687 B = 7089.555880 C = 7532.845229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.050 3.950 3 C -0.120 4.120 4 C -0.532 4.532 5 H 0.044 0.956 6 C 0.031 3.969 7 N -0.898 5.898 8 Si 0.944 3.056 9 H -0.279 1.279 10 H -0.283 1.283 11 H -0.276 1.276 12 C 0.146 3.854 13 N -0.704 5.704 14 C 0.546 3.454 15 O -0.590 6.590 16 C -0.161 4.161 17 C -0.054 4.054 18 C -0.154 4.154 19 C 0.137 3.863 20 O -0.504 6.504 21 C -0.152 4.152 22 C -0.067 4.067 23 H 0.037 0.963 24 H 0.062 0.938 25 H 0.018 0.982 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.036 0.964 29 H 0.261 0.739 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.408 0.592 33 H 0.132 0.868 34 H 0.156 0.844 35 H 0.417 0.583 36 H 0.159 0.841 37 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 6.300 17.914 19.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.178 4.178 4 C -0.570 4.570 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.771 3.229 9 H -0.205 1.205 10 H -0.208 1.208 11 H -0.201 1.201 12 C 0.023 3.977 13 N -0.355 5.355 14 C 0.335 3.665 15 O -0.473 6.473 16 C -0.164 4.164 17 C -0.073 4.073 18 C -0.172 4.172 19 C 0.092 3.908 20 O -0.318 6.318 21 C -0.170 4.170 22 C -0.086 4.086 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.247 0.753 33 H 0.150 0.850 34 H 0.173 0.827 35 H 0.278 0.722 36 H 0.177 0.823 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -2.464 5.369 17.754 18.711 hybrid contribution 0.551 -0.121 -1.224 1.348 sum -1.913 5.248 16.530 17.449 Atomic orbital electron populations 1.21655 0.96995 0.99280 0.99743 1.18374 0.93302 0.93126 0.90222 1.21691 0.97994 0.97717 1.00400 1.21251 1.29666 1.14505 0.91608 0.93726 1.25430 0.95140 0.95542 1.00845 1.69914 1.38089 1.21890 1.23695 0.85791 0.78518 0.78827 0.79764 1.20469 1.20831 1.20142 1.21329 0.97192 0.95211 0.84011 1.46063 1.52442 1.31823 1.05189 1.18757 0.79786 0.83730 0.84218 1.90716 1.40609 1.28391 1.87550 1.19960 1.04203 0.99179 0.93056 1.21205 0.96752 0.98712 0.90626 1.21570 0.98923 0.97052 0.99669 1.18784 0.92840 0.92596 0.86578 1.84704 1.50403 1.54665 1.42066 1.21603 1.02147 1.02243 0.90980 1.21395 0.94124 0.92796 1.00248 0.94380 0.91957 0.96308 0.96278 0.91745 0.94478 0.92995 0.94085 0.94115 0.75334 0.85027 0.82665 0.72170 0.82340 0.83884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.25 8.03 71.98 0.58 -4.67 16 2 C 0.05 2.33 0.50 -52.93 -0.03 2.30 16 3 C -0.12 -5.28 8.11 71.98 0.58 -4.70 16 4 C -0.53 -28.15 8.01 25.60 0.20 -27.95 16 5 H 0.04 2.42 7.75 -2.91 -0.02 2.39 16 6 C 0.03 1.61 5.13 84.65 0.43 2.04 16 7 N -0.90 -47.51 9.45 21.45 0.20 -47.31 16 8 Si 0.94 42.53 29.54 68.60 2.03 44.56 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.15 6.30 4.50 86.38 0.39 6.69 16 13 N -0.70 -24.97 4.85 -466.19 -2.26 -27.24 16 14 C 0.55 19.60 7.76 86.72 0.67 20.28 16 15 O -0.59 -25.66 16.34 -3.99 -0.07 -25.73 16 16 C -0.16 -4.44 5.88 -20.08 -0.12 -4.55 16 17 C -0.05 -1.32 9.59 22.51 0.22 -1.10 16 18 C -0.15 -2.85 9.97 22.32 0.22 -2.63 16 19 C 0.14 2.34 6.71 22.63 0.15 2.49 16 20 O -0.50 -6.56 13.49 -90.35 -1.22 -7.78 16 21 C -0.15 -2.63 9.97 22.33 0.22 -2.40 16 22 C -0.07 -1.44 9.53 22.51 0.21 -1.23 16 23 H 0.04 1.39 6.71 -2.39 -0.02 1.37 16 24 H 0.06 3.01 6.25 -2.39 -0.01 3.00 16 25 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.06 3.15 6.10 -2.39 -0.01 3.13 16 28 H 0.04 1.34 6.86 -2.38 -0.02 1.33 16 29 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 30 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.41 12.41 4.18 -92.71 -0.39 12.02 16 33 H 0.13 3.37 7.64 -2.91 -0.02 3.34 16 34 H 0.16 2.13 8.06 -2.91 -0.02 2.10 16 35 H 0.42 1.14 9.06 -74.06 -0.67 0.47 16 36 H 0.16 1.97 8.06 -2.91 -0.02 1.94 16 37 H 0.14 2.69 6.39 -2.92 -0.02 2.67 16 Total: -1.00 -64.97 306.63 2.47 -62.50 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.04 Total: 16.42 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: 3.75 Total: -15.43 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -2.06 Total: -74.55 kcal Atomic # 8 Polarization: -32.22 SS G_CDS: -1.28 Total: -33.51 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -64.97 2.47 -62.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315897996.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.767 kcal (2) G-P(sol) polarization free energy of solvation -64.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds