Wall clock time and date at job start Mon Mar 30 2020 06:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99740 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47046 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46873 * 120.00118 * 8 6 4 11 11 H 1.48497 * 109.47510 * 240.00153 * 8 6 4 12 12 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 13 13 N 1.46504 * 109.46883 * 300.00241 * 12 2 1 14 14 C 1.34775 * 119.99531 * 179.97438 * 13 12 2 15 15 O 1.21552 * 120.00294 * 0.02562 * 14 13 12 16 16 C 1.47862 * 120.00030 * 179.97438 * 14 13 12 17 17 C 1.39609 * 120.11342 * 359.72739 * 16 14 13 18 18 C 1.37965 * 119.95955 * 179.71944 * 17 16 14 19 19 C 1.38289 * 120.21127 * 0.55426 * 18 17 16 20 20 C 1.38809 * 120.23376 * 359.72496 * 19 18 17 21 21 O 1.35911 * 119.98376 * 179.97438 * 20 19 18 22 22 C 1.38495 * 120.03418 * 359.97438 * 20 19 18 23 23 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 24 24 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 25 25 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 28 28 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 29 29 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47002 * 59.99738 * 12 2 1 31 31 H 1.08993 * 109.46955 * 180.02562 * 12 2 1 32 32 H 0.96992 * 119.99966 * 359.97438 * 13 12 2 33 33 H 1.07994 * 120.01901 * 0.02562 * 17 16 14 34 34 H 1.08005 * 119.89311 * 180.28234 * 18 17 16 35 35 H 1.08003 * 119.88290 * 179.74117 * 19 18 17 36 36 H 0.96706 * 114.00245 * 270.02455 * 21 20 19 37 37 H 1.07998 * 120.10165 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1456 -2.2879 -3.6035 10 1 1.1660 -1.5870 -4.8159 11 1 3.1466 -0.1877 -4.8165 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0304 2.4455 14 6 1.8768 -0.4911 3.6696 15 8 2.5756 -1.4794 3.7812 16 6 1.3844 0.2063 4.8768 17 6 0.5871 1.3454 4.7515 18 6 0.1246 1.9903 5.8800 19 6 0.4575 1.5186 7.1366 20 6 1.2545 0.3901 7.2711 21 8 1.5790 -0.0687 8.5086 22 6 1.7191 -0.2686 6.1449 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 0.7095 1.1615 -3.4844 30 1 1.6766 -1.7488 1.2494 31 1 3.1299 -0.7208 1.2495 32 1 0.9942 0.7583 2.3564 33 1 0.3285 1.7188 3.7717 34 1 -0.4959 2.8689 5.7818 35 1 0.0960 2.0300 8.0166 36 1 2.3944 0.3083 8.8666 37 1 2.3388 -1.1470 6.2482 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315995871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:33 Heat of formation + Delta-G solvation = -62.150051 kcal Electronic energy + Delta-G solvation = -19435.960309 eV Core-core repulsion = 16371.184558 eV Total energy + Delta-G solvation = -3064.775751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.23052 -38.85552 -36.72944 -36.29330 -33.39229 -31.44838 -30.80852 -29.75400 -25.85352 -25.76021 -25.16436 -23.37946 -22.58190 -20.42103 -18.97406 -18.57876 -16.99757 -16.35529 -15.89984 -15.74860 -15.18801 -14.79378 -14.72426 -14.57105 -13.88892 -13.35955 -12.98627 -12.94596 -12.39317 -12.26275 -12.20778 -11.80619 -11.41663 -11.23301 -10.90153 -10.85718 -10.68033 -10.42288 -10.22533 -9.69291 -9.67099 -9.30830 -9.16445 -8.88888 -8.81145 -8.48524 -8.34418 -6.04435 -4.14404 0.73863 1.09483 2.93965 3.26139 3.34820 3.39116 3.56118 3.79068 4.06635 4.38692 4.70837 4.73730 5.00091 5.06754 5.22614 5.30978 5.53212 5.73016 6.11188 6.15889 6.18613 6.24130 6.29216 6.45858 6.53566 6.73359 6.78298 6.90306 6.96427 6.98610 7.31954 7.41776 7.52402 7.67263 7.97872 7.97952 8.11740 8.35480 8.60337 8.86428 9.51647 10.97096 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.045360 B = 0.003976 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.137426 B = 7039.995420 C = 7463.509812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.055 3.945 3 C -0.131 4.131 4 C -0.505 4.505 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.130 3.870 13 N -0.708 5.708 14 C 0.545 3.455 15 O -0.547 6.547 16 C -0.108 4.108 17 C -0.096 4.096 18 C -0.110 4.110 19 C -0.127 4.127 20 C 0.094 3.906 21 O -0.497 6.497 22 C -0.089 4.089 23 H 0.005 0.995 24 H 0.086 0.914 25 H 0.027 0.973 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.005 0.995 29 H 0.259 0.741 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.398 0.602 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.390 0.610 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.463 4.975 16.051 16.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.008 3.992 13 N -0.359 5.359 14 C 0.331 3.669 15 O -0.426 6.426 16 C -0.111 4.111 17 C -0.115 4.115 18 C -0.128 4.128 19 C -0.146 4.146 20 C 0.049 3.951 21 O -0.308 6.308 22 C -0.109 4.109 23 H 0.024 0.976 24 H 0.105 0.895 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.024 0.976 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.234 0.766 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.246 0.754 37 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -1.553 4.042 15.868 16.448 hybrid contribution 0.434 0.230 -0.815 0.952 sum -1.119 4.272 15.053 15.687 Atomic orbital electron populations 1.21837 0.97704 0.99274 1.00065 1.18380 0.92852 0.92805 0.90561 1.21836 0.98666 0.98302 1.00065 1.21017 1.31441 1.12112 0.89824 0.92327 1.24879 0.94837 0.94924 0.98875 1.69810 1.36729 1.22764 1.23145 0.86509 0.78646 0.79761 0.82938 1.19741 1.21053 1.21054 1.21792 0.98315 0.95915 0.83163 1.46260 1.52151 1.31601 1.05857 1.18229 0.80912 0.84293 0.83472 1.90744 1.38595 1.26371 1.86912 1.20043 1.00349 0.96893 0.93857 1.21448 0.96083 0.94380 0.99542 1.20995 1.00021 1.00246 0.91555 1.21581 0.99094 0.95551 0.98376 1.18339 0.98523 0.93761 0.84434 1.84847 1.47087 1.69334 1.29481 1.21555 0.98650 1.00121 0.90559 0.97590 0.89511 0.95348 0.95357 0.89512 0.97590 0.93047 0.92436 0.92443 0.76571 0.85045 0.84888 0.85145 0.75416 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 2 C 0.05 1.25 0.50 -155.66 -0.08 1.18 16 3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 4 C -0.51 -13.13 8.01 -34.44 -0.28 -13.41 16 5 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.33 9.35 55.43 0.52 -22.81 16 8 Si 0.89 20.58 29.54 -169.99 -5.02 15.56 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 C 0.13 2.77 4.50 -4.04 -0.02 2.75 16 13 N -0.71 -12.75 4.91 -61.24 -0.30 -13.05 16 14 C 0.55 9.86 7.77 -12.32 -0.10 9.76 16 15 O -0.55 -11.72 16.35 5.32 0.09 -11.63 16 16 C -0.11 -1.57 5.87 -104.98 -0.62 -2.19 16 17 C -0.10 -1.13 9.54 -39.17 -0.37 -1.51 16 18 C -0.11 -1.07 10.03 -39.66 -0.40 -1.47 16 19 C -0.13 -1.24 9.98 -39.35 -0.39 -1.63 16 20 C 0.09 1.06 6.70 -39.28 -0.26 0.80 16 21 O -0.50 -4.88 13.50 -19.46 -0.26 -5.14 16 22 C -0.09 -1.21 9.53 -39.02 -0.37 -1.58 16 23 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 24 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 25 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 2.13 6.07 -51.93 -0.32 1.81 16 28 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 29 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.40 6.37 4.19 -40.82 -0.17 6.20 16 33 H 0.13 1.40 6.40 -52.49 -0.34 1.07 16 34 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 36 H 0.39 1.86 9.06 45.56 0.41 2.28 16 37 H 0.14 1.99 7.65 -52.49 -0.40 1.59 16 LS Contribution 306.61 15.07 4.62 4.62 Total: -1.00 -30.07 306.61 -6.65 -36.72 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -3.92 Total: 6.62 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -2.38 Total: -10.89 kcal Atomic # 7 Polarization: -36.08 SS G_CDS: 0.22 Total: -35.86 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.18 Total: -16.77 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.07 -6.65 -36.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315995871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.426 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds