Wall clock time and date at job start Mon Mar 30 2020 06:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47269 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99740 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47046 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.46873 * 120.00118 * 8 6 4 11 11 H 1.48497 * 109.47510 * 240.00153 * 8 6 4 12 12 C 1.53006 * 109.47164 * 119.99504 * 2 1 3 13 13 N 1.46504 * 109.46883 * 300.00241 * 12 2 1 14 14 C 1.34775 * 119.99531 * 179.97438 * 13 12 2 15 15 O 1.21552 * 120.00294 * 0.02562 * 14 13 12 16 16 C 1.47862 * 120.00030 * 179.97438 * 14 13 12 17 17 C 1.39609 * 120.11342 * 359.72739 * 16 14 13 18 18 C 1.37965 * 119.95955 * 179.71944 * 17 16 14 19 19 C 1.38289 * 120.21127 * 0.55426 * 18 17 16 20 20 C 1.38809 * 120.23376 * 359.72496 * 19 18 17 21 21 O 1.35911 * 119.98376 * 179.97438 * 20 19 18 22 22 C 1.38495 * 120.03418 * 359.97438 * 20 19 18 23 23 H 1.09000 * 109.47140 * 300.00547 * 1 2 3 24 24 H 1.09001 * 109.47230 * 59.99691 * 1 2 3 25 25 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47362 * 180.02562 * 3 2 1 27 27 H 1.09002 * 109.46716 * 299.99747 * 3 2 1 28 28 H 1.09000 * 109.47486 * 59.99665 * 3 2 1 29 29 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 30 30 H 1.09001 * 109.47002 * 59.99738 * 12 2 1 31 31 H 1.08993 * 109.46955 * 180.02562 * 12 2 1 32 32 H 0.96992 * 119.99966 * 359.97438 * 13 12 2 33 33 H 1.07994 * 120.01901 * 0.02562 * 17 16 14 34 34 H 1.08005 * 119.89311 * 180.28234 * 18 17 16 35 35 H 1.08003 * 119.88290 * 179.74117 * 19 18 17 36 36 H 0.96706 * 114.00245 * 270.02455 * 21 20 19 37 37 H 1.07998 * 120.10165 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 3.1456 -2.2879 -3.6035 10 1 1.1660 -1.5870 -4.8159 11 1 3.1466 -0.1877 -4.8165 12 6 2.0400 -0.7212 1.2494 13 7 1.5516 -0.0304 2.4455 14 6 1.8768 -0.4911 3.6696 15 8 2.5756 -1.4794 3.7812 16 6 1.3844 0.2063 4.8768 17 6 0.5871 1.3454 4.7515 18 6 0.1246 1.9903 5.8800 19 6 0.4575 1.5186 7.1366 20 6 1.2545 0.3901 7.2711 21 8 1.5790 -0.0687 8.5086 22 6 1.7191 -0.2686 6.1449 23 1 -0.3633 0.5139 0.8899 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1300 1.4425 -0.0005 27 1 1.6767 1.9562 -0.8900 28 1 1.6767 1.9564 0.8899 29 1 0.7095 1.1615 -3.4844 30 1 1.6766 -1.7488 1.2494 31 1 3.1299 -0.7208 1.2495 32 1 0.9942 0.7583 2.3564 33 1 0.3285 1.7188 3.7717 34 1 -0.4959 2.8689 5.7818 35 1 0.0960 2.0300 8.0166 36 1 2.3944 0.3083 8.8666 37 1 2.3388 -1.1470 6.2482 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315995871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:33 Heat of formation + Delta-G solvation = -82.488348 kcal Electronic energy + Delta-G solvation = -19436.842244 eV Core-core repulsion = 16371.184558 eV Total energy + Delta-G solvation = -3065.657686 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.37396 -40.02776 -38.17638 -37.45741 -35.09490 -32.95665 -32.04353 -30.73044 -27.57231 -27.54849 -26.96942 -24.59106 -23.46113 -21.68808 -20.66509 -19.77308 -18.08385 -17.80403 -17.25139 -16.99722 -16.50709 -16.34946 -16.04537 -15.87626 -14.88503 -14.77150 -14.70081 -14.60414 -14.01241 -13.32324 -13.19777 -13.15429 -13.09929 -12.70819 -12.66333 -12.57971 -12.26362 -12.14232 -11.73704 -11.50222 -11.32098 -10.95945 -10.70130 -10.41002 -10.19376 -9.92365 -9.70938 -8.02944 -6.18430 -0.22839 0.24072 1.41411 1.45793 1.55031 1.79292 2.18593 2.47922 2.74580 3.20855 3.25406 3.67464 3.89454 4.10377 4.17250 4.38265 4.45830 4.48235 4.66340 4.74639 4.91623 4.96333 5.04071 5.09813 5.18134 5.25225 5.30260 5.33323 5.35165 5.53367 5.66364 5.67315 5.74961 6.14297 6.19971 6.42679 6.57338 6.82058 6.85182 7.18725 7.49315 8.96248 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.045360 B = 0.003976 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.137426 B = 7039.995420 C = 7463.509812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.529 4.529 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.945 3.055 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.145 3.855 13 N -0.701 5.701 14 C 0.544 3.456 15 O -0.590 6.590 16 C -0.131 4.131 17 C -0.097 4.097 18 C -0.099 4.099 19 C -0.114 4.114 20 C 0.096 3.904 21 O -0.506 6.506 22 C -0.109 4.109 23 H 0.037 0.963 24 H 0.065 0.935 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.261 0.739 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.409 0.591 33 H 0.143 0.857 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.412 0.588 37 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.651 6.857 17.689 19.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.772 3.228 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.206 1.206 12 C 0.022 3.978 13 N -0.352 5.352 14 C 0.333 3.667 15 O -0.473 6.473 16 C -0.134 4.134 17 C -0.116 4.116 18 C -0.117 4.117 19 C -0.132 4.132 20 C 0.051 3.949 21 O -0.319 6.319 22 C -0.129 4.129 23 H 0.056 0.944 24 H 0.083 0.917 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.248 0.752 33 H 0.161 0.839 34 H 0.188 0.812 35 H 0.181 0.819 36 H 0.272 0.728 37 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.744 5.954 17.523 18.709 hybrid contribution 0.799 -0.332 -1.199 1.479 sum -1.945 5.622 16.323 17.374 Atomic orbital electron populations 1.21681 0.96978 0.98734 1.00513 1.18380 0.93375 0.93166 0.90109 1.21677 0.97999 0.97673 1.00524 1.21286 1.31745 1.12177 0.91558 0.93808 1.25430 0.95113 0.95595 1.00893 1.69903 1.36947 1.23212 1.23579 0.85708 0.78129 0.78720 0.80245 1.20139 1.20709 1.20646 1.21365 0.97229 0.95203 0.84032 1.46035 1.52342 1.31782 1.05045 1.18835 0.79865 0.83727 0.84323 1.90711 1.40587 1.28430 1.87549 1.19753 1.02892 0.98544 0.92182 1.21626 0.95403 0.93382 1.01166 1.21404 0.99118 1.00634 0.90544 1.21963 0.97235 0.94342 0.99707 1.18385 0.98439 0.93896 0.84134 1.84793 1.48579 1.69962 1.28609 1.21534 0.99557 1.00355 0.91414 0.94389 0.91660 0.96349 0.96264 0.91681 0.94346 0.92981 0.94184 0.94056 0.75193 0.83897 0.81217 0.81950 0.72849 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.34 8.08 71.98 0.58 -4.75 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.30 16 3 C -0.12 -5.29 8.08 71.98 0.58 -4.71 16 4 C -0.53 -28.00 8.01 25.60 0.21 -27.80 16 5 H 0.04 2.38 7.74 -2.91 -0.02 2.36 16 6 C 0.03 1.55 5.15 84.65 0.44 1.98 16 7 N -0.90 -47.31 9.35 21.45 0.20 -47.11 16 8 Si 0.95 42.50 29.54 68.60 2.03 44.53 16 9 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 12 C 0.15 6.30 4.50 86.38 0.39 6.69 16 13 N -0.70 -25.01 4.91 -465.95 -2.29 -27.29 16 14 C 0.54 19.93 7.77 86.79 0.67 20.61 16 15 O -0.59 -26.39 16.35 -3.88 -0.06 -26.45 16 16 C -0.13 -3.69 5.87 -20.10 -0.12 -3.81 16 17 C -0.10 -2.02 9.54 22.54 0.21 -1.81 16 18 C -0.10 -1.48 10.03 22.22 0.22 -1.26 16 19 C -0.11 -1.73 9.98 22.42 0.22 -1.51 16 20 C 0.10 1.95 6.70 22.47 0.15 2.10 16 21 O -0.51 -8.75 13.50 -92.54 -1.25 -10.00 16 22 C -0.11 -2.92 9.53 22.63 0.22 -2.70 16 23 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 24 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 25 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.06 3.16 6.07 -2.39 -0.01 3.14 16 28 H 0.04 1.38 6.86 -2.39 -0.02 1.36 16 29 H 0.26 13.19 8.31 -92.71 -0.77 12.41 16 30 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.41 12.40 4.19 -92.71 -0.39 12.01 16 33 H 0.14 2.57 6.40 -2.91 -0.02 2.55 16 34 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.41 2.93 9.06 -74.05 -0.67 2.26 16 37 H 0.12 3.62 7.65 -2.91 -0.02 3.60 16 Total: -1.00 -66.31 306.61 2.42 -63.89 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: 0.04 Total: 17.10 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 3.75 Total: -14.67 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -2.09 Total: -74.41 kcal Atomic # 8 Polarization: -35.13 SS G_CDS: -1.31 Total: -36.45 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -66.31 2.42 -63.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315995871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.599 kcal (2) G-P(sol) polarization free energy of solvation -66.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds