Wall clock time and date at job start Mon Mar 30 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47092 * 2 1 4 4 C 1.50701 * 109.47419 * 240.00024 * 2 1 3 5 5 H 1.07998 * 119.99798 * 240.00066 * 4 2 1 6 6 C 1.37878 * 120.00235 * 59.99790 * 4 2 1 7 7 N 1.31518 * 119.99730 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99938 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47504 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47186 * 120.00265 * 8 6 4 11 11 H 1.48505 * 109.47015 * 240.00074 * 8 6 4 12 12 C 1.53004 * 109.47082 * 119.99918 * 2 1 3 13 13 N 1.46497 * 109.47057 * 299.99972 * 12 2 1 14 14 C 1.34774 * 120.00123 * 179.97438 * 13 12 2 15 15 O 1.21514 * 120.00170 * 0.02562 * 14 13 12 16 16 O 1.34682 * 120.00145 * 180.02562 * 14 13 12 17 17 C 1.35931 * 116.99931 * 185.95208 * 16 14 13 18 18 C 1.38724 * 120.05513 * 69.99456 * 17 16 14 19 19 C 1.38146 * 119.94582 * 179.97438 * 18 17 16 20 20 C 1.38266 * 120.05337 * 0.02562 * 19 18 17 21 21 C 1.38262 * 120.11113 * 359.96235 * 20 19 18 22 22 C 1.38151 * 120.05328 * 0.03868 * 21 20 19 23 23 H 1.08999 * 109.47437 * 300.00060 * 1 2 3 24 24 H 1.09010 * 109.46711 * 60.00270 * 1 2 3 25 25 H 1.09000 * 109.47418 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47027 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47033 * 299.99280 * 3 2 1 28 28 H 1.08998 * 109.47492 * 59.99949 * 3 2 1 29 29 H 0.96994 * 119.99674 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.47278 * 180.02562 * 12 2 1 31 31 H 1.09000 * 109.46882 * 59.99809 * 12 2 1 32 32 H 0.97005 * 119.99938 * 0.02562 * 13 12 2 33 33 H 1.08003 * 120.02874 * 359.69346 * 18 17 16 34 34 H 1.08001 * 119.97669 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.94808 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.98006 * 180.02562 * 21 20 19 37 37 H 1.08001 * 120.02301 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6035 8 14 2.3215 -1.1204 -4.0078 9 1 3.1466 -2.2870 -3.6037 10 1 1.1662 -1.5868 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8767 -0.4913 3.6695 15 8 2.5753 -1.4793 3.7811 16 8 1.4274 0.1433 4.7692 17 6 1.8917 -0.2966 5.9686 18 6 3.2154 -0.0805 6.3229 19 6 3.6847 -0.5282 7.5426 20 6 2.8364 -1.1915 8.4098 21 6 1.5166 -1.4079 8.0592 22 6 1.0425 -0.9622 6.8405 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 0.7096 1.1617 -3.4844 30 1 3.1300 -0.7209 1.2495 31 1 1.6766 -1.7489 1.2493 32 1 0.9936 0.7579 2.3564 33 1 3.8797 0.4332 5.6437 34 1 4.7153 -0.3605 7.8187 35 1 3.2052 -1.5411 9.3628 36 1 0.8557 -1.9260 8.7384 37 1 0.0116 -1.1319 6.5669 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316081212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:35 Heat of formation + Delta-G solvation = -52.002704 kcal Electronic energy + Delta-G solvation = -19434.714449 eV Core-core repulsion = 16370.378720 eV Total energy + Delta-G solvation = -3064.335729 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.01483 -38.78728 -37.18281 -35.94112 -33.47106 -31.11398 -31.04818 -30.00988 -25.88032 -25.76545 -25.14186 -23.11728 -22.79933 -20.93069 -19.11002 -18.53379 -17.60310 -16.44762 -16.34412 -15.85189 -14.90581 -14.79912 -14.64116 -14.04097 -13.80459 -13.58479 -13.17751 -12.93454 -12.59692 -12.25795 -11.89018 -11.75158 -11.42586 -11.24801 -10.93216 -10.71556 -10.69590 -10.43723 -10.39024 -10.18403 -9.69597 -9.43672 -9.10462 -8.85388 -8.77826 -8.62296 -8.40456 -6.06232 -4.16793 0.99702 1.23206 2.58543 3.08894 3.25369 3.34196 3.38773 3.68772 4.35529 4.58671 4.77328 4.80327 4.97473 5.20860 5.23502 5.37950 5.53880 5.83512 6.08886 6.18811 6.21449 6.28859 6.32918 6.41584 6.47667 6.65071 6.79703 6.83172 6.89334 6.96534 7.02730 7.29989 7.50976 7.65345 7.86212 7.96230 8.09074 8.32748 8.70022 8.84126 9.49368 10.95341 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.049037 B = 0.003717 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.859460 B = 7530.986000 C = 7671.001821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 C -0.133 4.133 4 C -0.507 4.507 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.147 3.853 13 N -0.689 5.689 14 C 0.635 3.365 15 O -0.564 6.564 16 O -0.314 6.314 17 C 0.114 3.886 18 C -0.122 4.122 19 C -0.106 4.106 20 C -0.125 4.125 21 C -0.108 4.108 22 C -0.120 4.120 23 H 0.008 0.992 24 H 0.087 0.913 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.087 0.913 28 H 0.008 0.992 29 H 0.260 0.740 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.406 0.594 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.129 0.871 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.634 0.005 17.050 17.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.056 3.944 3 C -0.191 4.191 4 C -0.545 4.545 5 H 0.078 0.922 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.026 3.974 13 N -0.348 5.348 14 C 0.387 3.613 15 O -0.452 6.452 16 O -0.227 6.227 17 C 0.072 3.928 18 C -0.141 4.141 19 C -0.124 4.124 20 C -0.143 4.143 21 C -0.126 4.126 22 C -0.139 4.139 23 H 0.027 0.973 24 H 0.106 0.894 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.106 0.894 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.242 0.758 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.143 0.857 36 H 0.147 0.853 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.898 -0.400 16.962 16.991 hybrid contribution 0.085 -0.092 -0.928 0.937 sum 0.983 -0.493 16.034 16.072 Atomic orbital electron populations 1.21853 0.97539 0.99364 1.00321 1.18405 0.93035 0.92918 0.90081 1.21854 0.98687 0.98194 1.00322 1.20983 1.31665 1.12216 0.89684 0.92235 1.24880 0.94797 0.94914 0.98900 1.69814 1.36563 1.22687 1.23240 0.86486 0.78646 0.79734 0.82853 1.19720 1.21021 1.21029 1.21901 0.98364 0.95761 0.81370 1.45231 1.54379 1.32947 1.02202 1.18538 0.79647 0.81784 0.81302 1.90998 1.41517 1.26862 1.85832 1.84287 1.67225 1.58265 1.12901 1.18333 0.92901 0.97829 0.83742 1.21390 0.94594 1.00345 0.97724 1.21011 0.99942 0.98001 0.93419 1.21199 0.93856 0.99396 0.99817 1.20997 0.95936 0.99673 0.95957 1.21151 1.00615 0.97093 0.95010 0.97324 0.89422 0.95284 0.95299 0.89416 0.97334 0.92971 0.92192 0.92200 0.75761 0.85463 0.85403 0.85654 0.85278 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.08 37.15 0.30 -2.67 16 2 C 0.06 1.29 0.50 -155.66 -0.08 1.21 16 3 C -0.13 -2.96 8.08 37.16 0.30 -2.66 16 4 C -0.51 -13.05 8.01 -34.44 -0.28 -13.32 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.14 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.88 -23.26 9.35 55.43 0.52 -22.75 16 8 Si 0.89 20.45 29.54 -169.99 -5.02 15.43 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 12 C 0.15 3.09 4.50 -4.04 -0.02 3.07 16 13 N -0.69 -12.81 4.96 -65.27 -0.32 -13.13 16 14 C 0.63 12.06 8.53 54.05 0.46 12.52 16 15 O -0.56 -12.25 15.84 -19.28 -0.31 -12.56 16 16 O -0.31 -5.27 10.09 -24.73 -0.25 -5.52 16 17 C 0.11 1.74 5.25 -39.22 -0.21 1.53 16 18 C -0.12 -1.68 9.39 -39.44 -0.37 -2.05 16 19 C -0.11 -1.16 10.04 -39.60 -0.40 -1.56 16 20 C -0.12 -1.22 10.04 -39.56 -0.40 -1.62 16 21 C -0.11 -1.11 10.04 -39.60 -0.40 -1.51 16 22 C -0.12 -1.53 9.99 -39.44 -0.39 -1.93 16 23 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 24 H 0.09 2.16 6.07 -51.92 -0.32 1.84 16 25 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.09 2.16 6.07 -51.93 -0.32 1.84 16 28 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 29 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.41 6.94 6.27 -40.82 -0.26 6.69 16 33 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 34 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 309.75 15.07 4.67 4.67 Total: -1.00 -28.48 309.75 -7.22 -35.70 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -4.95 Total: 5.51 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -1.57 Total: -7.35 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.19 Total: -35.88 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: -0.55 Total: -18.08 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.48 -7.22 -35.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316081212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.303 kcal (2) G-P(sol) polarization free energy of solvation -28.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds