Wall clock time and date at job start Mon Mar 30 2020 06:30:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47092 * 2 1 4 4 C 1.50701 * 109.47419 * 240.00024 * 2 1 3 5 5 H 1.07998 * 119.99798 * 240.00066 * 4 2 1 6 6 C 1.37878 * 120.00235 * 59.99790 * 4 2 1 7 7 N 1.31518 * 119.99730 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 119.99938 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47504 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47186 * 120.00265 * 8 6 4 11 11 H 1.48505 * 109.47015 * 240.00074 * 8 6 4 12 12 C 1.53004 * 109.47082 * 119.99918 * 2 1 3 13 13 N 1.46497 * 109.47057 * 299.99972 * 12 2 1 14 14 C 1.34774 * 120.00123 * 179.97438 * 13 12 2 15 15 O 1.21514 * 120.00170 * 0.02562 * 14 13 12 16 16 O 1.34682 * 120.00145 * 180.02562 * 14 13 12 17 17 C 1.35931 * 116.99931 * 185.95208 * 16 14 13 18 18 C 1.38724 * 120.05513 * 69.99456 * 17 16 14 19 19 C 1.38146 * 119.94582 * 179.97438 * 18 17 16 20 20 C 1.38266 * 120.05337 * 0.02562 * 19 18 17 21 21 C 1.38262 * 120.11113 * 359.96235 * 20 19 18 22 22 C 1.38151 * 120.05328 * 0.03868 * 21 20 19 23 23 H 1.08999 * 109.47437 * 300.00060 * 1 2 3 24 24 H 1.09010 * 109.46711 * 60.00270 * 1 2 3 25 25 H 1.09000 * 109.47418 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47027 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47033 * 299.99280 * 3 2 1 28 28 H 1.08998 * 109.47492 * 59.99949 * 3 2 1 29 29 H 0.96994 * 119.99674 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.47278 * 180.02562 * 12 2 1 31 31 H 1.09000 * 109.46882 * 59.99809 * 12 2 1 32 32 H 0.97005 * 119.99938 * 0.02562 * 13 12 2 33 33 H 1.08003 * 120.02874 * 359.69346 * 18 17 16 34 34 H 1.08001 * 119.97669 * 179.97438 * 19 18 17 35 35 H 1.07998 * 119.94808 * 179.97438 * 20 19 18 36 36 H 1.08002 * 119.98006 * 180.02562 * 21 20 19 37 37 H 1.08001 * 120.02301 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6035 8 14 2.3215 -1.1204 -4.0078 9 1 3.1466 -2.2870 -3.6037 10 1 1.1662 -1.5868 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 6 2.0399 -0.7213 1.2493 13 7 1.5516 -0.0306 2.4454 14 6 1.8767 -0.4913 3.6695 15 8 2.5753 -1.4793 3.7811 16 8 1.4274 0.1433 4.7692 17 6 1.8917 -0.2966 5.9686 18 6 3.2154 -0.0805 6.3229 19 6 3.6847 -0.5282 7.5426 20 6 2.8364 -1.1915 8.4098 21 6 1.5166 -1.4079 8.0592 22 6 1.0425 -0.9622 6.8405 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9564 0.8899 29 1 0.7096 1.1617 -3.4844 30 1 3.1300 -0.7209 1.2495 31 1 1.6766 -1.7489 1.2493 32 1 0.9936 0.7579 2.3564 33 1 3.8797 0.4332 5.6437 34 1 4.7153 -0.3605 7.8187 35 1 3.2052 -1.5411 9.3628 36 1 0.8557 -1.9260 8.7384 37 1 0.0116 -1.1319 6.5669 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316081212.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:35 Heat of formation + Delta-G solvation = -67.810807 kcal Electronic energy + Delta-G solvation = -19435.399940 eV Core-core repulsion = 16370.378720 eV Total energy + Delta-G solvation = -3065.021220 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.31590 -39.97510 -38.62218 -37.49366 -35.19995 -32.85431 -31.99651 -31.04824 -27.60769 -27.58571 -26.99430 -24.34252 -23.72278 -22.20776 -20.75452 -20.12506 -18.84017 -17.80469 -17.70609 -17.29983 -16.70702 -16.11539 -15.93276 -15.49051 -15.06189 -14.78972 -14.66692 -14.43766 -14.08328 -13.61435 -13.29827 -13.12328 -12.97013 -12.69610 -12.60006 -12.56373 -12.28164 -12.15823 -11.94356 -11.70549 -11.52152 -11.27397 -10.73097 -10.42842 -10.19974 -9.99534 -9.74010 -8.03126 -6.19224 -0.01376 0.34487 1.29218 1.42910 1.47625 1.56875 1.59532 2.46048 2.74114 3.21139 3.30733 3.89988 3.92378 4.19763 4.27590 4.42416 4.43832 4.47703 4.55931 4.67346 4.90738 4.99753 5.03366 5.06811 5.16791 5.17023 5.29878 5.37020 5.45028 5.47677 5.52641 5.64661 5.67246 5.98470 6.11622 6.17550 6.37600 6.41411 6.84913 7.24809 7.48827 8.96379 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.049037 B = 0.003717 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.859460 B = 7530.986000 C = 7671.001821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.052 3.948 3 C -0.124 4.124 4 C -0.527 4.527 5 H 0.049 0.951 6 C 0.028 3.972 7 N -0.900 5.900 8 Si 0.948 3.052 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.163 3.837 13 N -0.683 5.683 14 C 0.639 3.361 15 O -0.595 6.595 16 O -0.308 6.308 17 C 0.068 3.932 18 C -0.143 4.143 19 C -0.109 4.109 20 C -0.114 4.114 21 C -0.104 4.104 22 C -0.132 4.132 23 H 0.034 0.966 24 H 0.064 0.936 25 H 0.022 0.978 26 H 0.022 0.978 27 H 0.065 0.935 28 H 0.034 0.966 29 H 0.261 0.739 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.414 0.586 33 H 0.117 0.883 34 H 0.154 0.846 35 H 0.164 0.836 36 H 0.164 0.836 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 -0.406 19.178 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.052 3.948 3 C -0.181 4.181 4 C -0.566 4.566 5 H 0.068 0.932 6 C -0.172 4.172 7 N -0.538 5.538 8 Si 0.775 3.225 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.041 3.959 13 N -0.342 5.342 14 C 0.392 3.608 15 O -0.485 6.485 16 O -0.221 6.221 17 C 0.026 3.974 18 C -0.161 4.161 19 C -0.126 4.126 20 C -0.132 4.132 21 C -0.122 4.122 22 C -0.150 4.150 23 H 0.053 0.947 24 H 0.083 0.917 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.252 0.748 33 H 0.135 0.865 34 H 0.172 0.828 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.956 -0.786 19.110 19.150 hybrid contribution 0.078 0.019 -1.432 1.434 sum 1.034 -0.768 17.678 17.725 Atomic orbital electron populations 1.21707 0.97031 0.98964 1.00461 1.18393 0.93397 0.93137 0.89920 1.21706 0.98206 0.97777 1.00451 1.21257 1.31847 1.12298 0.91196 0.93248 1.25464 0.95083 0.95573 1.01051 1.69919 1.36958 1.23296 1.23640 0.85660 0.78086 0.78717 0.80061 1.19815 1.20796 1.20802 1.21499 0.97591 0.95142 0.81669 1.44962 1.54451 1.33013 1.01750 1.18573 0.79035 0.81340 0.81837 1.90963 1.42826 1.28247 1.86441 1.84308 1.66854 1.57866 1.13040 1.18816 0.94368 1.00827 0.83397 1.21522 0.94184 1.01314 0.99126 1.21392 1.01529 0.97291 0.92424 1.21709 0.93354 0.97413 1.00716 1.21459 0.96830 0.98633 0.95267 1.21418 1.00853 0.96956 0.95783 0.94679 0.91668 0.95899 0.95895 0.91666 0.94704 0.92982 0.93202 0.93261 0.74770 0.86461 0.82806 0.81840 0.81850 0.84413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.08 71.98 0.58 -4.91 16 2 C 0.05 2.39 0.50 -52.93 -0.03 2.37 16 3 C -0.12 -5.48 8.08 71.98 0.58 -4.90 16 4 C -0.53 -27.42 8.01 25.60 0.21 -27.22 16 5 H 0.05 2.60 7.74 -2.91 -0.02 2.58 16 6 C 0.03 1.47 5.15 84.65 0.44 1.90 16 7 N -0.90 -47.55 9.35 21.45 0.20 -47.35 16 8 Si 0.95 42.10 29.54 68.60 2.03 44.12 16 9 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.16 6.89 4.50 86.38 0.39 7.28 16 13 N -0.68 -25.19 4.96 -590.78 -2.93 -28.12 16 14 C 0.64 24.37 8.53 129.79 1.11 25.48 16 15 O -0.59 -26.16 15.84 19.80 0.31 -25.85 16 16 O -0.31 -10.38 10.09 0.29 0.00 -10.38 16 17 C 0.07 2.04 5.25 22.50 0.12 2.15 16 18 C -0.14 -3.88 9.39 22.36 0.21 -3.67 16 19 C -0.11 -2.14 10.04 22.25 0.22 -1.92 16 20 C -0.11 -1.82 10.04 22.28 0.22 -1.59 16 21 C -0.10 -1.81 10.04 22.25 0.22 -1.59 16 22 C -0.13 -3.18 9.99 22.36 0.22 -2.95 16 23 H 0.03 1.32 6.86 -2.39 -0.02 1.31 16 24 H 0.06 3.21 6.07 -2.38 -0.01 3.20 16 25 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 28 H 0.03 1.31 6.86 -2.39 -0.02 1.30 16 29 H 0.26 13.24 8.31 -92.71 -0.77 12.47 16 30 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.41 13.75 6.27 -92.70 -0.58 13.17 16 33 H 0.12 3.27 8.06 -2.91 -0.02 3.25 16 34 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.16 1.68 8.06 -2.91 -0.02 1.66 16 37 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 Total: -1.00 -61.60 309.75 4.60 -57.01 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.49 Total: 20.14 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 4.50 Total: -9.57 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -2.73 Total: -75.47 kcal Atomic # 8 Polarization: -36.54 SS G_CDS: 0.32 Total: -36.22 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -61.60 4.60 -57.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316081212.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.804 kcal (2) G-P(sol) polarization free energy of solvation -61.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds