Wall clock time and date at job start Mon Mar 30 2020 06:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46911 * 2 1 4 4 H 1.08999 * 109.47395 * 54.59802 * 3 2 1 5 5 C 1.52998 * 109.46911 * 174.59796 * 3 2 1 6 6 C 1.50703 * 109.46827 * 294.25578 * 5 3 2 7 7 H 1.07994 * 120.00214 * 354.92663 * 6 5 3 8 8 C 1.37885 * 119.99795 * 174.92656 * 6 5 3 9 9 N 1.31519 * 119.99952 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99825 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.47520 * 359.97438 * 10 8 6 12 12 H 1.48505 * 109.47284 * 120.00041 * 10 8 6 13 13 H 1.48505 * 109.47139 * 239.99539 * 10 8 6 14 14 C 1.50703 * 109.46984 * 294.59579 * 3 2 1 15 15 C 1.38621 * 119.54497 * 324.72935 * 14 3 2 16 16 C 1.38583 * 119.35371 * 179.73170 * 15 14 3 17 17 C 1.38631 * 118.49079 * 0.53255 * 16 15 14 18 18 C 1.39306 * 119.05672 * 359.72856 * 17 16 15 19 19 C 1.48063 * 119.72710 * 179.97438 * 18 17 16 20 20 O 1.21439 * 120.00287 * 0.02759 * 19 18 17 21 21 O 1.34687 * 120.00285 * 180.02562 * 19 18 17 22 22 C 1.45196 * 117.00070 * 180.02562 * 21 19 18 23 23 N 1.31478 * 119.54214 * 145.00431 * 14 3 2 24 24 H 1.09000 * 109.47273 * 175.16597 * 1 2 3 25 25 H 1.09001 * 109.47169 * 55.16306 * 1 2 3 26 26 H 1.09002 * 109.46974 * 295.16326 * 1 2 3 27 27 H 1.09001 * 109.47287 * 119.99714 * 2 1 3 28 28 H 1.08994 * 109.47074 * 240.00042 * 2 1 3 29 29 H 1.09000 * 109.47513 * 54.25788 * 5 3 2 30 30 H 1.08998 * 109.46918 * 174.25938 * 5 3 2 31 31 H 0.96998 * 119.99956 * 180.02562 * 9 8 6 32 32 H 1.07998 * 120.32800 * 359.97438 * 15 14 3 33 33 H 1.08006 * 120.75832 * 180.28772 * 16 15 14 34 34 H 1.08000 * 120.47531 * 179.75398 * 17 16 15 35 35 H 1.08997 * 109.47038 * 179.97438 * 22 21 19 36 36 H 1.08996 * 109.47799 * 300.00434 * 22 21 19 37 37 H 1.09003 * 109.47292 * 60.00205 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 0.8376 5 6 3.5639 1.4447 0.1358 6 6 3.9484 0.9026 1.4884 7 1 3.1831 0.6650 2.2124 8 6 5.2774 0.7100 1.8015 9 7 6.2093 0.9990 0.9197 10 14 5.7539 0.0375 3.4778 11 1 4.5284 -0.2055 4.2804 12 1 6.4952 -1.2379 3.3070 13 1 6.6172 1.0216 4.1789 14 6 1.6498 2.1132 -1.2919 15 6 1.6317 1.3767 -2.4662 16 6 1.2669 1.9961 -3.6510 17 6 0.9416 3.3433 -3.6200 18 6 0.9869 4.0225 -2.4046 19 6 0.6430 5.4618 -2.3546 20 8 0.3225 6.0452 -3.3703 21 8 0.6854 6.1240 -1.1825 22 6 0.3351 7.5329 -1.2084 23 7 1.3366 3.3902 -1.2907 24 1 -0.3634 -1.0240 -0.0866 25 1 -0.3633 0.5870 -0.8435 26 1 -0.3633 0.4370 0.9302 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 3.9991 0.8190 -0.6435 30 1 3.9363 2.4639 0.0336 31 1 7.1442 0.8632 1.1398 32 1 1.8954 0.3295 -2.4572 33 1 1.2405 1.4428 -4.5782 34 1 0.6567 3.8589 -4.5252 35 1 0.4097 7.9443 -0.2018 36 1 1.0180 8.0651 -1.8704 37 1 -0.6861 7.6467 -1.5722 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328578637.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:26 Heat of formation + Delta-G solvation = -85.118759 kcal Electronic energy + Delta-G solvation = -19499.819055 eV Core-core repulsion = 16434.047306 eV Total energy + Delta-G solvation = -3065.771749 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.97229 -40.88095 -37.76500 -37.27967 -34.66328 -33.71708 -32.03409 -30.95902 -28.84602 -27.18105 -25.78338 -24.20389 -23.67811 -22.66751 -20.81140 -19.16296 -18.70026 -18.08098 -17.53056 -17.31035 -16.88243 -16.55278 -15.66415 -15.37396 -14.98368 -14.58905 -14.51896 -14.25734 -14.16497 -13.97190 -13.72666 -13.16267 -13.03090 -12.87637 -12.56224 -12.52382 -12.18946 -12.07929 -11.86691 -11.75277 -11.43347 -11.41659 -11.14852 -10.91247 -10.52636 -10.46197 -9.97381 -8.16041 -6.25317 -0.53794 0.24062 1.27292 1.42471 1.43939 1.55714 1.56461 2.43807 2.75507 3.01934 3.18150 3.68550 3.85496 3.97486 4.03599 4.21892 4.23421 4.29563 4.33319 4.44770 4.47495 4.64312 4.67355 4.89744 4.94169 5.02422 5.10145 5.12448 5.16136 5.29280 5.36620 5.53500 5.59505 5.61200 5.73496 5.86324 6.26970 6.42253 6.88962 6.92477 7.42961 8.96210 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019485 B = 0.005161 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.685953 B = 5424.517018 C = 6072.004295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 C -0.029 4.029 4 H 0.061 0.939 5 C 0.046 3.954 6 C -0.525 4.525 7 H 0.065 0.935 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.961 3.039 11 H -0.260 1.260 12 H -0.277 1.277 13 H -0.285 1.285 14 C 0.135 3.865 15 C -0.135 4.135 16 C -0.068 4.068 17 C -0.113 4.113 18 C 0.058 3.942 19 C 0.527 3.473 20 O -0.517 6.517 21 O -0.352 6.352 22 C 0.026 3.974 23 N -0.469 5.469 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.005 0.995 30 H -0.027 1.027 31 H 0.262 0.738 32 H 0.163 0.837 33 H 0.191 0.809 34 H 0.168 0.832 35 H 0.128 0.872 36 H 0.067 0.933 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.121 2.826 -8.184 15.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C -0.048 4.048 4 H 0.079 0.921 5 C 0.008 3.992 6 C -0.563 4.563 7 H 0.083 0.917 8 C -0.196 4.196 9 N -0.576 5.576 10 Si 0.786 3.214 11 H -0.184 1.184 12 H -0.203 1.203 13 H -0.211 1.211 14 C -0.005 4.005 15 C -0.154 4.154 16 C -0.093 4.093 17 C -0.133 4.133 18 C -0.078 4.078 19 C 0.372 3.628 20 O -0.407 6.407 21 O -0.267 6.267 22 C -0.067 4.067 23 N -0.181 5.181 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.023 0.977 30 H -0.008 1.008 31 H 0.071 0.929 32 H 0.181 0.819 33 H 0.208 0.792 34 H 0.185 0.815 35 H 0.146 0.854 36 H 0.086 0.914 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.057 3.572 -7.716 15.581 hybrid contribution 0.779 -0.092 0.176 0.804 sum -12.278 3.480 -7.539 14.822 Atomic orbital electron populations 1.21765 0.94801 1.02183 1.01194 1.21526 0.95855 0.93962 1.02985 1.20173 0.96957 0.96027 0.91657 0.92088 1.18913 0.89719 0.94182 0.96346 1.21589 0.92240 1.42152 1.00337 0.91723 1.25911 0.96755 0.96032 1.00914 1.70112 1.00675 1.50082 1.36695 0.85457 0.78501 0.77891 0.79570 1.18354 1.20258 1.21074 1.21644 0.93245 0.88504 0.97133 1.22660 0.97209 1.03094 0.92482 1.22066 0.94169 0.93332 0.99722 1.22290 0.97796 0.95664 0.97599 1.20246 1.04331 0.91673 0.91552 1.21003 0.73229 0.87109 0.81497 1.90783 1.45552 1.68891 1.35435 1.86720 1.79227 1.27187 1.33572 1.23666 1.01557 0.75684 1.05814 1.67390 1.09434 1.11056 1.30250 0.90800 0.93388 0.93465 0.91525 0.90988 0.97680 1.00841 0.92943 0.81936 0.79156 0.81495 0.85376 0.91405 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.76 71.98 0.70 -3.13 16 2 C -0.11 -3.56 4.94 30.60 0.15 -3.41 16 3 C -0.03 -1.19 2.11 -11.54 -0.02 -1.21 16 4 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 5 C 0.05 2.41 4.42 29.85 0.13 2.54 16 6 C -0.53 -29.13 8.23 25.60 0.21 -28.92 16 7 H 0.06 3.43 7.33 -2.91 -0.02 3.41 16 8 C 0.00 0.07 5.46 84.66 0.46 0.54 16 9 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 10 Si 0.96 43.86 29.54 68.60 2.03 45.88 16 11 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 12 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 C 0.14 5.00 4.90 42.70 0.21 5.21 16 15 C -0.13 -3.83 8.61 22.44 0.19 -3.64 16 16 C -0.07 -1.50 10.17 22.45 0.23 -1.28 16 17 C -0.11 -2.93 9.63 22.62 0.22 -2.71 16 18 C 0.06 1.94 6.75 41.87 0.28 2.22 16 19 C 0.53 17.44 7.95 70.43 0.56 18.00 16 20 O -0.52 -16.96 16.11 20.03 0.32 -16.64 16 21 O -0.35 -11.29 10.38 -55.96 -0.58 -11.87 16 22 C 0.03 0.54 10.56 113.37 1.20 1.74 16 23 N -0.47 -18.34 10.03 -173.12 -1.74 -20.08 16 24 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.05 1.26 6.83 -2.39 -0.02 1.24 16 26 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.07 2.47 6.98 -2.39 -0.02 2.46 16 28 H 0.07 2.19 6.20 -2.39 -0.01 2.18 16 29 H 0.00 0.27 8.14 -2.39 -0.02 0.25 16 30 H -0.03 -1.61 8.14 -2.39 -0.02 -1.63 16 31 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 32 H 0.16 3.98 6.20 -2.91 -0.02 3.96 16 33 H 0.19 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.17 3.49 7.64 -2.91 -0.02 3.47 16 35 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -71.19 316.82 5.90 -65.29 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 1.06 Total: 7.81 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 4.52 Total: -14.06 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -1.45 Total: -76.41 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.26 Total: -28.51 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -71.19 5.90 -65.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328578637.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.831 kcal (2) G-P(sol) polarization free energy of solvation -71.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds