Wall clock time and date at job start Mon Mar 30 2020 06:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46968 * 2 1 4 4 H 1.09009 * 109.46911 * 304.99959 * 3 2 1 5 5 C 1.52996 * 109.47238 * 185.00332 * 3 2 1 6 6 C 1.50702 * 109.47159 * 64.99689 * 5 3 2 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 3 8 8 C 1.37884 * 119.99942 * 179.72211 * 6 5 3 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48501 * 109.47188 * 90.00793 * 10 8 6 12 12 H 1.48501 * 109.47085 * 210.00372 * 10 8 6 13 13 H 1.48498 * 109.47634 * 330.00608 * 10 8 6 14 14 C 1.50700 * 109.47413 * 65.00056 * 3 2 1 15 15 C 1.38623 * 119.54302 * 34.99713 * 14 3 2 16 16 C 1.38579 * 119.35756 * 179.97438 * 15 14 3 17 17 C 1.38632 * 118.48890 * 0.02562 * 16 15 14 18 18 C 1.39312 * 119.05752 * 0.02562 * 17 16 15 19 19 C 1.48067 * 119.72560 * 180.02562 * 18 17 16 20 20 O 1.21427 * 119.99928 * 359.97438 * 19 18 17 21 21 O 1.34680 * 120.00017 * 179.97438 * 19 18 17 22 22 C 1.45193 * 116.99928 * 179.97438 * 21 19 18 23 23 N 1.31472 * 119.54599 * 214.73220 * 14 3 2 24 24 H 1.09000 * 109.47331 * 299.99762 * 1 2 3 25 25 H 1.09003 * 109.47683 * 59.99830 * 1 2 3 26 26 H 1.09002 * 109.47411 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46855 * 240.00267 * 2 1 3 28 28 H 1.08989 * 109.47523 * 120.00162 * 2 1 3 29 29 H 1.09004 * 109.47066 * 304.99893 * 5 3 2 30 30 H 1.08994 * 109.47405 * 184.99723 * 5 3 2 31 31 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 32 32 H 1.07999 * 120.32509 * 0.02953 * 15 14 3 33 33 H 1.08001 * 120.76035 * 180.02562 * 16 15 14 34 34 H 1.08007 * 120.47428 * 180.02562 * 17 16 15 35 35 H 1.09007 * 109.47095 * 180.02562 * 22 21 19 36 36 H 1.09003 * 109.47708 * 300.00369 * 22 21 19 37 37 H 1.09004 * 109.47042 * 60.00335 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8419 5 6 3.5647 1.4444 -0.1258 6 6 3.9588 0.8822 -1.4673 7 1 3.1978 0.5565 -2.1611 8 6 5.2907 0.7894 -1.8116 9 7 6.2174 1.1864 -0.9670 10 14 5.7788 0.0996 -3.4775 11 1 5.8564 1.2041 -4.4672 12 1 7.1037 -0.5626 -3.3702 13 1 4.7647 -0.8909 -3.9197 14 6 1.6413 2.1163 1.2877 15 6 1.6098 1.3812 2.4625 16 6 1.2432 2.0048 3.6445 17 6 0.9181 3.3520 3.6082 18 6 0.9706 4.0282 2.3913 19 6 0.6269 5.4673 2.3356 20 8 0.3007 6.0532 3.3479 21 8 0.6762 6.1265 1.1622 22 6 0.3258 7.5354 1.1824 23 7 1.3332 3.3944 1.2822 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.9954 0.8312 0.6658 30 1 3.9354 2.4655 -0.0367 31 1 7.1544 1.1207 -1.2091 32 1 1.8694 0.3329 2.4570 33 1 1.2114 1.4539 4.5729 34 1 0.6284 3.8701 4.5105 35 1 0.4063 7.9443 0.1751 36 1 -0.6974 7.6503 1.5401 37 1 1.0051 8.0693 1.8470 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000328578638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:29 Heat of formation + Delta-G solvation = -66.275092 kcal Electronic energy + Delta-G solvation = -19501.070843 eV Core-core repulsion = 16436.116217 eV Total energy + Delta-G solvation = -3064.954626 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.74297 -39.63677 -36.51532 -35.80434 -32.66733 -32.50266 -30.80470 -29.20743 -27.85372 -25.41494 -24.61259 -22.72462 -22.13585 -21.38790 -19.38330 -17.92861 -17.10031 -16.52539 -16.35953 -15.96779 -15.65085 -14.63244 -14.33616 -14.04836 -13.84160 -13.30570 -13.20415 -12.87324 -12.71111 -12.41909 -12.18668 -12.11535 -11.78694 -11.12126 -10.95601 -10.79467 -10.78142 -10.68840 -10.49609 -10.33662 -9.88339 -9.82393 -9.60064 -9.29271 -9.00115 -8.59444 -8.35953 -6.00807 -4.03016 0.67725 1.42140 2.50983 2.65189 3.32477 3.39011 3.41263 4.00459 4.24718 4.46159 4.86890 4.94327 5.07034 5.13184 5.14648 5.17580 5.35031 5.42548 5.50863 5.61139 5.68168 5.78096 5.87831 6.05091 6.18745 6.31296 6.32269 6.40924 6.42659 6.71006 6.84282 6.96596 7.01663 7.61249 7.64515 7.74954 7.97292 8.18738 8.37452 9.02243 9.60578 11.10515 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019252 B = 0.005197 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.074829 B = 5386.592340 C = 6062.397181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.039 4.039 4 H 0.083 0.917 5 C 0.036 3.964 6 C -0.515 4.515 7 H 0.059 0.941 8 C 0.058 3.942 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.162 3.838 15 C -0.135 4.135 16 C -0.087 4.087 17 C -0.125 4.125 18 C 0.084 3.916 19 C 0.529 3.471 20 O -0.509 6.509 21 O -0.330 6.330 22 C 0.034 3.966 23 N -0.435 5.435 24 H 0.043 0.957 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.018 0.982 30 H 0.020 0.980 31 H 0.260 0.740 32 H 0.146 0.854 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.103 0.897 36 H 0.061 0.939 37 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.915 3.588 7.335 14.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.058 4.058 4 H 0.101 0.899 5 C -0.001 4.001 6 C -0.553 4.553 7 H 0.077 0.923 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.719 3.281 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.198 1.198 14 C 0.021 3.979 15 C -0.155 4.155 16 C -0.112 4.112 17 C -0.145 4.145 18 C -0.053 4.053 19 C 0.372 3.628 20 O -0.397 6.397 21 O -0.245 6.245 22 C -0.060 4.060 23 N -0.146 5.146 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.076 0.924 29 H 0.036 0.964 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.163 0.837 33 H 0.159 0.841 34 H 0.161 0.839 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.813 4.343 6.874 14.341 hybrid contribution 0.385 -0.499 0.031 0.630 sum -11.429 3.844 6.905 13.895 Atomic orbital electron populations 1.21874 0.97356 1.00613 1.01195 1.21611 0.93720 0.96383 1.03228 1.20477 1.00734 0.93786 0.90847 0.89901 1.19118 0.85905 0.97697 0.97418 1.21168 0.91771 1.41467 1.00939 0.92258 1.25005 0.96740 0.95600 0.97004 1.69971 1.00400 1.47571 1.35432 0.86602 0.77857 0.79188 0.84405 1.20684 1.21331 1.19810 1.21892 0.91001 0.88167 0.96836 1.22456 0.97807 1.02396 0.92826 1.21548 0.96907 0.93873 0.98894 1.21915 0.99607 0.95090 0.97913 1.19934 1.03147 0.91249 0.90929 1.20951 0.73435 0.87009 0.81358 1.90805 1.44773 1.68539 1.35613 1.86742 1.79194 1.24943 1.33588 1.23325 1.00841 0.77937 1.03930 1.67557 1.08143 1.10315 1.28576 0.93811 0.92928 0.93349 0.89694 0.92374 0.96357 0.96143 0.92998 0.83651 0.84068 0.83909 0.87835 0.91985 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.69 37.16 0.36 -1.83 16 2 C -0.11 -1.90 4.92 -26.73 -0.13 -2.03 16 3 C -0.04 -0.78 2.12 -91.77 -0.19 -0.98 16 4 H 0.08 1.75 8.14 -51.92 -0.42 1.32 16 5 C 0.04 0.90 4.43 -27.88 -0.12 0.78 16 6 C -0.52 -13.90 8.34 -34.44 -0.29 -14.19 16 7 H 0.06 1.54 7.08 -52.49 -0.37 1.17 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 10 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 14 C 0.16 2.96 4.98 -82.60 -0.41 2.55 16 15 C -0.13 -2.04 8.52 -39.31 -0.33 -2.37 16 16 C -0.09 -1.11 10.17 -39.31 -0.40 -1.51 16 17 C -0.12 -1.76 9.63 -39.04 -0.38 -2.14 16 18 C 0.08 1.42 6.75 -83.02 -0.56 0.86 16 19 C 0.53 8.77 7.95 34.76 0.28 9.05 16 20 O -0.51 -8.56 16.11 -19.21 -0.31 -8.87 16 21 O -0.33 -5.24 10.38 -40.44 -0.42 -5.66 16 22 C 0.03 0.37 10.56 101.05 1.07 1.44 16 23 N -0.43 -8.32 10.03 -6.07 -0.06 -8.38 16 24 H 0.04 0.61 6.86 -51.93 -0.36 0.25 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.57 6.82 -51.93 -0.35 1.22 16 28 H 0.06 0.92 6.22 -51.94 -0.32 0.60 16 29 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 32 H 0.15 1.95 6.20 -52.49 -0.33 1.63 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.14 1.74 7.64 -52.48 -0.40 1.33 16 35 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 316.49 15.07 4.77 4.77 Total: -1.00 -31.60 316.49 -6.59 -38.19 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.07 Total: -1.66 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: -1.21 Total: -8.86 kcal Atomic # 7 Polarization: -34.77 SS G_CDS: 0.68 Total: -34.10 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.73 Total: -14.54 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.60 -6.59 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328578638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.084 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds