Wall clock time and date at job start Mon Mar 30 2020 06:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.46968 * 2 1 4 4 H 1.09009 * 109.46911 * 304.99959 * 3 2 1 5 5 C 1.52996 * 109.47238 * 185.00332 * 3 2 1 6 6 C 1.50702 * 109.47159 * 64.99689 * 5 3 2 7 7 H 1.08002 * 120.00299 * 0.02562 * 6 5 3 8 8 C 1.37884 * 119.99942 * 179.72211 * 6 5 3 9 9 N 1.31514 * 119.99698 * 0.28408 * 8 6 5 10 10 Si 1.86794 * 119.99837 * 180.27476 * 8 6 5 11 11 H 1.48501 * 109.47188 * 90.00793 * 10 8 6 12 12 H 1.48501 * 109.47085 * 210.00372 * 10 8 6 13 13 H 1.48498 * 109.47634 * 330.00608 * 10 8 6 14 14 C 1.50700 * 109.47413 * 65.00056 * 3 2 1 15 15 C 1.38623 * 119.54302 * 34.99713 * 14 3 2 16 16 C 1.38579 * 119.35756 * 179.97438 * 15 14 3 17 17 C 1.38632 * 118.48890 * 0.02562 * 16 15 14 18 18 C 1.39312 * 119.05752 * 0.02562 * 17 16 15 19 19 C 1.48067 * 119.72560 * 180.02562 * 18 17 16 20 20 O 1.21427 * 119.99928 * 359.97438 * 19 18 17 21 21 O 1.34680 * 120.00017 * 179.97438 * 19 18 17 22 22 C 1.45193 * 116.99928 * 179.97438 * 21 19 18 23 23 N 1.31472 * 119.54599 * 214.73220 * 14 3 2 24 24 H 1.09000 * 109.47331 * 299.99762 * 1 2 3 25 25 H 1.09003 * 109.47683 * 59.99830 * 1 2 3 26 26 H 1.09002 * 109.47411 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46855 * 240.00267 * 2 1 3 28 28 H 1.08989 * 109.47523 * 120.00162 * 2 1 3 29 29 H 1.09004 * 109.47066 * 304.99893 * 5 3 2 30 30 H 1.08994 * 109.47405 * 184.99723 * 5 3 2 31 31 H 0.97005 * 119.99651 * 179.97438 * 9 8 6 32 32 H 1.07999 * 120.32509 * 0.02953 * 15 14 3 33 33 H 1.08001 * 120.76035 * 180.02562 * 16 15 14 34 34 H 1.08007 * 120.47428 * 180.02562 * 17 16 15 35 35 H 1.09007 * 109.47095 * 180.02562 * 22 21 19 36 36 H 1.09003 * 109.47708 * 300.00369 * 22 21 19 37 37 H 1.09004 * 109.47042 * 60.00335 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8419 5 6 3.5647 1.4444 -0.1258 6 6 3.9588 0.8822 -1.4673 7 1 3.1978 0.5565 -2.1611 8 6 5.2907 0.7894 -1.8116 9 7 6.2174 1.1864 -0.9670 10 14 5.7788 0.0996 -3.4775 11 1 5.8564 1.2041 -4.4672 12 1 7.1037 -0.5626 -3.3702 13 1 4.7647 -0.8909 -3.9197 14 6 1.6413 2.1163 1.2877 15 6 1.6098 1.3812 2.4625 16 6 1.2432 2.0048 3.6445 17 6 0.9181 3.3520 3.6082 18 6 0.9706 4.0282 2.3913 19 6 0.6269 5.4673 2.3356 20 8 0.3007 6.0532 3.3479 21 8 0.6762 6.1265 1.1622 22 6 0.3258 7.5354 1.1824 23 7 1.3332 3.3944 1.2822 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 3.9954 0.8312 0.6658 30 1 3.9354 2.4655 -0.0367 31 1 7.1544 1.1207 -1.2091 32 1 1.8694 0.3329 2.4570 33 1 1.2114 1.4539 4.5729 34 1 0.6284 3.8701 4.5105 35 1 0.4063 7.9443 0.1751 36 1 -0.6974 7.6503 1.5401 37 1 1.0051 8.0693 1.8470 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000328578638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:28 Heat of formation + Delta-G solvation = -85.051980 kcal Electronic energy + Delta-G solvation = -19501.885070 eV Core-core repulsion = 16436.116217 eV Total energy + Delta-G solvation = -3065.768853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.97313 -40.88253 -37.76786 -37.28353 -34.66241 -33.71757 -32.03242 -30.95653 -28.84638 -27.18011 -25.78231 -24.20118 -23.68326 -22.66661 -20.81427 -19.16488 -18.69038 -18.08236 -17.53192 -17.31269 -16.88242 -16.55788 -15.66045 -15.37011 -14.98705 -14.58422 -14.52610 -14.25802 -14.15952 -13.97258 -13.71538 -13.15852 -13.02887 -12.87551 -12.57705 -12.49679 -12.21292 -12.07855 -11.86820 -11.76663 -11.43921 -11.41300 -11.14122 -10.91024 -10.51827 -10.45858 -9.97170 -8.15700 -6.25196 -0.53771 0.24268 1.27281 1.43434 1.44560 1.55192 1.55852 2.43989 2.75669 3.01984 3.18512 3.68552 3.85538 3.97555 4.03665 4.21872 4.23334 4.29396 4.33289 4.44903 4.47293 4.64180 4.67313 4.89910 4.94415 5.02105 5.09904 5.12867 5.16119 5.28860 5.36723 5.52171 5.60006 5.61278 5.73884 5.86728 6.26888 6.42273 6.89164 6.92644 7.43155 8.96396 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.019252 B = 0.005197 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.074829 B = 5386.592340 C = 6062.397181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.106 4.106 3 C -0.029 4.029 4 H 0.061 0.939 5 C 0.047 3.953 6 C -0.526 4.526 7 H 0.066 0.934 8 C 0.000 4.000 9 N -0.935 5.935 10 Si 0.961 3.039 11 H -0.279 1.279 12 H -0.284 1.284 13 H -0.258 1.258 14 C 0.135 3.865 15 C -0.135 4.135 16 C -0.068 4.068 17 C -0.113 4.113 18 C 0.058 3.942 19 C 0.527 3.473 20 O -0.517 6.517 21 O -0.352 6.352 22 C 0.025 3.975 23 N -0.470 5.470 24 H 0.049 0.951 25 H 0.045 0.955 26 H 0.073 0.927 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.002 0.998 30 H -0.025 1.025 31 H 0.262 0.738 32 H 0.164 0.836 33 H 0.191 0.809 34 H 0.167 0.833 35 H 0.128 0.872 36 H 0.073 0.927 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.216 2.466 8.215 15.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.143 4.143 3 C -0.048 4.048 4 H 0.079 0.921 5 C 0.009 3.991 6 C -0.564 4.564 7 H 0.085 0.915 8 C -0.197 4.197 9 N -0.576 5.576 10 Si 0.786 3.214 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.182 1.182 14 C -0.005 4.005 15 C -0.154 4.154 16 C -0.093 4.093 17 C -0.134 4.134 18 C -0.078 4.078 19 C 0.372 3.628 20 O -0.407 6.407 21 O -0.267 6.267 22 C -0.067 4.067 23 N -0.182 5.182 24 H 0.068 0.932 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.020 0.980 30 H -0.006 1.006 31 H 0.070 0.930 32 H 0.181 0.819 33 H 0.209 0.791 34 H 0.185 0.815 35 H 0.146 0.854 36 H 0.091 0.909 37 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.137 3.226 7.744 15.587 hybrid contribution 0.773 -0.050 -0.186 0.797 sum -12.364 3.175 7.558 14.835 Atomic orbital electron populations 1.21767 0.94806 1.02205 1.01204 1.21527 0.95863 0.93933 1.03014 1.20177 0.96900 0.96015 0.91740 0.92096 1.18902 0.89693 0.94286 0.96221 1.21585 0.92152 1.40862 1.01834 0.91543 1.25927 0.96837 0.95987 1.00952 1.70112 1.00740 1.49091 1.37668 0.85502 0.77767 0.78677 0.79453 1.20454 1.20973 1.18164 1.21647 0.93279 0.88475 0.97126 1.22663 0.97203 1.03116 0.92452 1.22067 0.94180 0.93288 0.99759 1.22293 0.97818 0.95718 0.97527 1.20248 1.04267 0.91682 0.91613 1.21004 0.73257 0.87123 0.81463 1.90779 1.45446 1.68734 1.35697 1.86719 1.79166 1.27262 1.33576 1.23669 1.01569 0.75686 1.05801 1.67383 1.09386 1.11025 1.30379 0.93215 0.93568 0.90839 0.91516 0.90923 0.97974 1.00649 0.92971 0.81875 0.79138 0.81501 0.85387 0.90861 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.82 9.69 71.98 0.70 -3.12 16 2 C -0.11 -3.54 4.92 30.59 0.15 -3.39 16 3 C -0.03 -1.20 2.12 -11.54 -0.02 -1.22 16 4 H 0.06 2.71 8.14 -2.38 -0.02 2.69 16 5 C 0.05 2.44 4.43 29.85 0.13 2.57 16 6 C -0.53 -29.17 8.34 25.60 0.21 -28.95 16 7 H 0.07 3.50 7.08 -2.91 -0.02 3.48 16 8 C 0.00 0.02 5.46 84.66 0.46 0.48 16 9 N -0.94 -56.91 13.29 21.45 0.28 -56.62 16 10 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 14 C 0.14 5.00 4.98 42.70 0.21 5.21 16 15 C -0.13 -3.81 8.52 22.44 0.19 -3.62 16 16 C -0.07 -1.50 10.17 22.45 0.23 -1.27 16 17 C -0.11 -2.93 9.63 22.62 0.22 -2.72 16 18 C 0.06 1.94 6.75 41.87 0.28 2.23 16 19 C 0.53 17.50 7.95 70.43 0.56 18.06 16 20 O -0.52 -17.01 16.11 20.07 0.32 -16.69 16 21 O -0.35 -11.36 10.38 -55.89 -0.58 -11.94 16 22 C 0.03 0.55 10.56 113.37 1.20 1.74 16 23 N -0.47 -18.42 10.03 -173.12 -1.74 -20.15 16 24 H 0.05 1.28 6.86 -2.39 -0.02 1.26 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.07 2.46 6.82 -2.38 -0.02 2.44 16 28 H 0.07 2.19 6.22 -2.39 -0.01 2.18 16 29 H 0.00 0.10 8.14 -2.38 -0.02 0.09 16 30 H -0.02 -1.51 8.14 -2.39 -0.02 -1.53 16 31 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 32 H 0.16 3.94 6.20 -2.91 -0.02 3.93 16 33 H 0.19 2.34 8.06 -2.91 -0.02 2.32 16 34 H 0.17 3.50 7.64 -2.91 -0.02 3.47 16 35 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -71.45 316.49 5.90 -65.55 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 1.06 Total: 7.95 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 4.52 Total: -14.01 kcal Atomic # 7 Polarization: -75.32 SS G_CDS: -1.45 Total: -76.77 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.26 Total: -28.62 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -71.45 5.90 -65.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000328578638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.505 kcal (2) G-P(sol) polarization free energy of solvation -71.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds