Wall clock time and date at job start Mon Mar 30 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47141 * 2 1 4 4 C 1.53001 * 109.47122 * 239.99795 * 2 1 3 5 5 C 1.50700 * 109.47333 * 120.00006 * 2 1 3 6 6 C 1.38400 * 119.88398 * 359.97438 * 5 2 1 7 7 C 1.38097 * 120.18925 * 179.97438 * 6 5 2 8 8 C 1.38935 * 119.97157 * 359.97438 * 7 6 5 9 9 N 1.39574 * 120.10867 * 179.97438 * 8 7 6 10 10 C 1.34784 * 119.99738 * 24.84885 * 9 8 7 11 11 O 1.21770 * 120.00222 * 5.52069 * 10 9 8 12 12 C 1.41812 * 119.99413 * 185.52433 * 10 9 8 13 13 H 1.08001 * 120.00844 * 0.02562 * 12 10 9 14 14 C 1.40145 * 119.99802 * 179.97438 * 12 10 9 15 15 N 1.30636 * 119.99575 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 119.99896 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47176 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46725 * 120.00188 * 16 14 12 19 19 H 1.48498 * 109.47077 * 239.99645 * 16 14 12 20 20 C 1.39558 * 119.77660 * 359.97438 * 8 7 6 21 21 O 1.35932 * 120.09222 * 179.72357 * 20 8 7 22 22 C 1.38243 * 119.89259 * 179.97438 * 5 2 1 23 23 H 1.08999 * 109.47521 * 299.99666 * 1 2 3 24 24 H 1.09001 * 109.47676 * 59.99927 * 1 2 3 25 25 H 1.09009 * 109.47257 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47671 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.47123 * 300.00136 * 3 2 1 28 28 H 1.09002 * 109.47372 * 59.99831 * 3 2 1 29 29 H 1.08995 * 109.47141 * 300.00066 * 4 2 1 30 30 H 1.09006 * 109.46843 * 60.00047 * 4 2 1 31 31 H 1.09002 * 109.47309 * 179.97438 * 4 2 1 32 32 H 1.07993 * 119.90654 * 359.97438 * 6 5 2 33 33 H 1.08002 * 120.00743 * 179.97438 * 7 6 5 34 34 H 0.96994 * 120.00231 * 204.83913 * 9 8 7 35 35 H 0.97001 * 119.99292 * 180.02562 * 15 14 12 36 36 H 0.96703 * 113.99652 * 90.00253 * 21 20 8 37 37 H 1.08003 * 119.98077 * 0.03815 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2304 6 6 1.1309 -1.2350 2.1402 7 6 1.5843 -1.8877 3.2696 8 6 2.9490 -2.0193 3.4943 9 7 3.4105 -2.6779 4.6351 10 6 2.6330 -3.5947 5.2447 11 8 1.5716 -3.9218 4.7454 12 6 3.0510 -4.1782 6.4678 13 1 3.9921 -3.8878 6.9109 14 6 2.2424 -5.1310 7.1020 15 7 1.1034 -5.4812 6.5668 16 14 2.7934 -5.9002 8.7127 17 1 4.1103 -5.3372 9.1051 18 1 1.7938 -5.6037 9.7702 19 1 2.9136 -7.3706 8.5434 20 6 3.8569 -1.4907 2.5755 21 8 5.1935 -1.6109 2.7919 22 6 3.3920 -0.8359 1.4467 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1300 -0.7209 -1.2495 32 1 0.0699 -1.1337 1.9664 33 1 0.8783 -2.2956 3.9778 34 1 4.2907 -2.4760 4.9890 35 1 0.5435 -6.1405 7.0060 36 1 5.5823 -2.4123 2.4154 37 1 4.0919 -0.4244 0.7345 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334291609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:39 Heat of formation + Delta-G solvation = -70.858895 kcal Electronic energy + Delta-G solvation = -19737.389733 eV Core-core repulsion = 16672.236338 eV Total energy + Delta-G solvation = -3065.153395 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.86453 -37.94806 -37.06193 -34.92918 -33.14518 -32.33966 -29.79397 -28.39475 -27.15529 -27.01782 -26.25516 -22.63774 -21.81156 -20.11208 -19.14741 -17.71196 -17.07624 -16.29192 -15.67819 -15.25919 -14.86095 -14.42700 -14.07176 -13.88747 -13.54613 -13.28081 -12.93606 -12.63632 -12.39984 -12.34744 -11.74647 -11.61822 -11.50246 -11.45244 -11.28067 -11.15508 -10.86190 -10.77462 -10.68173 -10.43146 -10.31010 -9.99962 -9.30925 -8.88980 -8.17130 -7.67015 -6.87119 -6.40634 -4.93707 1.88158 2.04967 3.02051 3.11052 3.15824 3.95554 4.12957 4.44409 4.65135 4.70491 4.90414 5.00045 5.14989 5.48514 5.56452 5.64999 5.67250 5.67699 5.74791 5.84650 5.93995 5.94884 6.13057 6.15895 6.22551 6.30675 6.41606 6.44979 6.60265 6.90904 7.04442 7.20099 7.20367 7.46389 7.84248 7.93462 8.05569 8.30036 8.76834 9.26051 10.33888 10.53890 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036406 B = 0.004623 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.909991 B = 6055.066936 C = 6581.570744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.021 4.021 3 C -0.136 4.136 4 C -0.137 4.137 5 C -0.114 4.114 6 C -0.104 4.104 7 C -0.130 4.130 8 C 0.175 3.825 9 N -0.692 5.692 10 C 0.541 3.459 11 O -0.565 6.565 12 C -0.537 4.537 13 H 0.071 0.929 14 C 0.088 3.912 15 N -0.747 5.747 16 Si 0.913 3.087 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.274 1.274 20 C 0.030 3.970 21 O -0.497 6.497 22 C -0.115 4.115 23 H 0.058 0.942 24 H 0.052 0.948 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.120 0.880 33 H 0.155 0.845 34 H 0.396 0.604 35 H 0.273 0.727 36 H 0.377 0.623 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.439 8.262 -10.148 13.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 C -0.194 4.194 4 C -0.194 4.194 5 C -0.116 4.116 6 C -0.123 4.123 7 C -0.151 4.151 8 C 0.074 3.926 9 N -0.333 5.333 10 C 0.351 3.649 11 O -0.449 6.449 12 C -0.572 4.572 13 H 0.089 0.911 14 C -0.135 4.135 15 N -0.374 5.374 16 Si 0.737 3.263 17 H -0.185 1.185 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.018 4.018 21 O -0.305 6.305 22 C -0.134 4.134 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.138 0.862 33 H 0.172 0.828 34 H 0.229 0.771 35 H 0.083 0.917 36 H 0.231 0.769 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 1.450 8.378 -10.067 13.177 hybrid contribution 0.923 -0.815 0.740 1.437 sum 2.373 7.563 -9.327 12.240 Atomic orbital electron populations 1.21946 0.94564 1.02022 1.01437 1.19337 0.95299 0.94576 0.92868 1.21883 1.01001 0.95137 1.01338 1.21883 1.00948 1.00379 0.96179 1.19358 0.92588 1.02689 0.96948 1.21063 0.99212 0.97876 0.94126 1.21628 0.94808 0.99261 0.99413 1.18427 0.92850 0.92517 0.88801 1.44130 1.21057 1.41627 1.26471 1.17102 0.84025 0.78286 0.85524 1.90595 1.23935 1.63606 1.66808 1.20121 1.07131 1.23985 1.05954 0.91074 1.25771 0.93899 0.95307 0.98547 1.70020 1.08455 1.23150 1.35805 0.86217 0.79732 0.79103 0.81225 1.18522 1.19873 1.19901 1.18128 0.82493 1.06246 0.94939 1.84812 1.18955 1.46602 1.80161 1.20735 0.95129 1.01252 0.96250 0.92272 0.92939 0.92191 0.92665 0.92956 0.92580 0.92519 0.92950 0.92709 0.86173 0.82782 0.77076 0.91652 0.76947 0.86567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 7.13 37.15 0.26 -1.37 16 2 C -0.02 -0.26 0.85 -155.67 -0.13 -0.39 16 3 C -0.14 -1.52 8.29 37.15 0.31 -1.21 16 4 C -0.14 -1.54 8.28 37.16 0.31 -1.23 16 5 C -0.11 -1.81 4.77 -104.56 -0.50 -2.31 16 6 C -0.10 -1.87 8.96 -39.57 -0.35 -2.23 16 7 C -0.13 -2.85 8.71 -39.38 -0.34 -3.19 16 8 C 0.18 3.82 6.45 -83.58 -0.54 3.28 16 9 N -0.69 -16.11 5.26 -12.30 -0.06 -16.17 16 10 C 0.54 15.04 7.38 -14.89 -0.11 14.93 16 11 O -0.57 -17.40 12.04 5.13 0.06 -17.34 16 12 C -0.54 -14.64 9.32 -37.50 -0.35 -14.99 16 13 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 14 C 0.09 2.34 5.50 -17.34 -0.10 2.25 16 15 N -0.75 -21.31 11.73 55.56 0.65 -20.66 16 16 Si 0.91 19.25 29.56 -169.99 -5.02 14.23 16 17 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 19 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 20 C 0.03 0.55 6.73 -38.98 -0.26 0.29 16 21 O -0.50 -8.18 12.92 -19.53 -0.25 -8.43 16 22 C -0.11 -1.87 8.64 -39.47 -0.34 -2.22 16 23 H 0.06 0.68 7.50 -51.93 -0.39 0.29 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 25 H 0.06 0.71 7.51 -51.92 -0.39 0.32 16 26 H 0.05 0.61 7.38 -51.93 -0.38 0.23 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.60 7.38 -51.93 -0.38 0.22 16 32 H 0.12 1.92 5.87 -52.49 -0.31 1.61 16 33 H 0.15 3.89 5.78 -52.49 -0.30 3.58 16 34 H 0.40 8.29 8.30 -40.82 -0.34 7.96 16 35 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 36 H 0.38 4.72 9.06 45.56 0.41 5.14 16 37 H 0.12 1.65 7.09 -52.48 -0.37 1.28 16 LS Contribution 306.54 15.07 4.62 4.62 Total: -1.00 -31.97 306.54 -6.27 -38.24 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: -4.11 Total: 13.91 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -2.14 Total: -8.39 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.59 Total: -36.84 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.19 Total: -25.77 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.23 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -31.97 -6.27 -38.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334291609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.621 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds