Wall clock time and date at job start Mon Mar 30 2020 06:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47141 * 2 1 4 4 C 1.53001 * 109.47122 * 239.99795 * 2 1 3 5 5 C 1.50700 * 109.47333 * 120.00006 * 2 1 3 6 6 C 1.38400 * 119.88398 * 359.97438 * 5 2 1 7 7 C 1.38097 * 120.18925 * 179.97438 * 6 5 2 8 8 C 1.38935 * 119.97157 * 359.97438 * 7 6 5 9 9 N 1.39574 * 120.10867 * 179.97438 * 8 7 6 10 10 C 1.34784 * 119.99738 * 24.84885 * 9 8 7 11 11 O 1.21770 * 120.00222 * 5.52069 * 10 9 8 12 12 C 1.41812 * 119.99413 * 185.52433 * 10 9 8 13 13 H 1.08001 * 120.00844 * 0.02562 * 12 10 9 14 14 C 1.40145 * 119.99802 * 179.97438 * 12 10 9 15 15 N 1.30636 * 119.99575 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 119.99896 * 179.97438 * 14 12 10 17 17 H 1.48494 * 109.47176 * 0.02562 * 16 14 12 18 18 H 1.48507 * 109.46725 * 120.00188 * 16 14 12 19 19 H 1.48498 * 109.47077 * 239.99645 * 16 14 12 20 20 C 1.39558 * 119.77660 * 359.97438 * 8 7 6 21 21 O 1.35932 * 120.09222 * 179.72357 * 20 8 7 22 22 C 1.38243 * 119.89259 * 179.97438 * 5 2 1 23 23 H 1.08999 * 109.47521 * 299.99666 * 1 2 3 24 24 H 1.09001 * 109.47676 * 59.99927 * 1 2 3 25 25 H 1.09009 * 109.47257 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47671 * 179.97438 * 3 2 1 27 27 H 1.09006 * 109.47123 * 300.00136 * 3 2 1 28 28 H 1.09002 * 109.47372 * 59.99831 * 3 2 1 29 29 H 1.08995 * 109.47141 * 300.00066 * 4 2 1 30 30 H 1.09006 * 109.46843 * 60.00047 * 4 2 1 31 31 H 1.09002 * 109.47309 * 179.97438 * 4 2 1 32 32 H 1.07993 * 119.90654 * 359.97438 * 6 5 2 33 33 H 1.08002 * 120.00743 * 179.97438 * 7 6 5 34 34 H 0.96994 * 120.00231 * 204.83913 * 9 8 7 35 35 H 0.97001 * 119.99292 * 180.02562 * 15 14 12 36 36 H 0.96703 * 113.99652 * 90.00253 * 21 20 8 37 37 H 1.08003 * 119.98077 * 0.03815 * 22 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2304 6 6 1.1309 -1.2350 2.1402 7 6 1.5843 -1.8877 3.2696 8 6 2.9490 -2.0193 3.4943 9 7 3.4105 -2.6779 4.6351 10 6 2.6330 -3.5947 5.2447 11 8 1.5716 -3.9218 4.7454 12 6 3.0510 -4.1782 6.4678 13 1 3.9921 -3.8878 6.9109 14 6 2.2424 -5.1310 7.1020 15 7 1.1034 -5.4812 6.5668 16 14 2.7934 -5.9002 8.7127 17 1 4.1103 -5.3372 9.1051 18 1 1.7938 -5.6037 9.7702 19 1 2.9136 -7.3706 8.5434 20 6 3.8569 -1.4907 2.5755 21 8 5.1935 -1.6109 2.7919 22 6 3.3920 -0.8359 1.4467 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 3.1299 1.4425 0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 -1.7489 -1.2492 30 1 1.6766 -0.2074 -2.1392 31 1 3.1300 -0.7209 -1.2495 32 1 0.0699 -1.1337 1.9664 33 1 0.8783 -2.2956 3.9778 34 1 4.2907 -2.4760 4.9890 35 1 0.5435 -6.1405 7.0060 36 1 5.5823 -2.4123 2.4154 37 1 4.0919 -0.4244 0.7345 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334291609.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:38 Heat of formation + Delta-G solvation = -93.597243 kcal Electronic energy + Delta-G solvation = -19738.375742 eV Core-core repulsion = 16672.236338 eV Total energy + Delta-G solvation = -3066.139404 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.37592 -39.59446 -38.49255 -36.39773 -34.95523 -34.33385 -31.20511 -30.07406 -28.19470 -28.01234 -27.95520 -24.21204 -23.26749 -21.89823 -20.44200 -19.54390 -18.52711 -17.82427 -17.65912 -16.63156 -16.33681 -15.88511 -15.50194 -15.14161 -14.98296 -14.76757 -14.56695 -14.21515 -13.78071 -13.40004 -13.24590 -12.94521 -12.86384 -12.73594 -12.68518 -12.60143 -12.47926 -12.10508 -11.99327 -11.81438 -11.46880 -11.33508 -11.08987 -10.76210 -9.87502 -9.53860 -8.56260 -8.41520 -7.05578 0.40120 0.53907 1.36911 1.37980 1.56383 2.18784 2.32138 2.79723 2.92260 3.35271 3.61117 3.80250 3.92730 4.20028 4.21315 4.33517 4.49147 4.66899 4.83044 4.86381 4.87762 4.96795 5.08852 5.09605 5.09679 5.13514 5.18279 5.27411 5.38731 5.49715 5.53446 5.55852 5.78892 5.85257 5.93981 6.13330 6.31065 6.69926 6.88079 7.34460 8.33511 8.52078 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036406 B = 0.004623 C = 0.004253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.909991 B = 6055.066936 C = 6581.570744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.022 4.022 3 C -0.134 4.134 4 C -0.135 4.135 5 C -0.095 4.095 6 C -0.108 4.108 7 C -0.156 4.156 8 C 0.132 3.868 9 N -0.688 5.688 10 C 0.527 3.473 11 O -0.609 6.609 12 C -0.565 4.565 13 H 0.088 0.912 14 C 0.033 3.967 15 N -0.799 5.799 16 Si 1.003 2.997 17 H -0.248 1.248 18 H -0.266 1.266 19 H -0.265 1.265 20 C 0.043 3.957 21 O -0.498 6.498 22 C -0.110 4.110 23 H 0.053 0.947 24 H 0.076 0.924 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.047 0.953 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.134 0.866 33 H 0.109 0.891 34 H 0.404 0.596 35 H 0.280 0.720 36 H 0.397 0.603 37 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.986 9.480 -11.465 15.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.022 4.022 3 C -0.192 4.192 4 C -0.193 4.193 5 C -0.096 4.096 6 C -0.126 4.126 7 C -0.177 4.177 8 C 0.033 3.967 9 N -0.331 5.331 10 C 0.337 3.663 11 O -0.496 6.496 12 C -0.600 4.600 13 H 0.106 0.894 14 C -0.186 4.186 15 N -0.428 5.428 16 Si 0.821 3.179 17 H -0.170 1.170 18 H -0.191 1.191 19 H -0.189 1.189 20 C -0.004 4.004 21 O -0.308 6.308 22 C -0.128 4.128 23 H 0.072 0.928 24 H 0.095 0.905 25 H 0.069 0.931 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.127 0.873 34 H 0.239 0.761 35 H 0.090 0.910 36 H 0.254 0.746 37 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 3.034 9.633 -11.428 15.251 hybrid contribution 0.445 -1.078 0.977 1.522 sum 3.478 8.555 -10.451 13.946 Atomic orbital electron populations 1.21967 0.93933 1.01799 1.02473 1.19471 0.95943 0.95316 0.91475 1.21873 1.01270 0.93808 1.02204 1.21880 1.01340 0.99810 0.96225 1.19828 0.92210 1.00405 0.97205 1.21211 1.00584 0.97523 0.93322 1.21366 0.94579 1.01344 1.00456 1.18698 0.93521 0.94799 0.89648 1.43664 1.20877 1.41315 1.27221 1.17456 0.83902 0.78903 0.86077 1.90563 1.25743 1.65282 1.68031 1.20630 1.08182 1.24821 1.06374 0.89400 1.27028 0.93454 0.95262 1.02813 1.70163 1.10177 1.24166 1.38252 0.84896 0.79706 0.78061 0.75208 1.17044 1.19067 1.18925 1.18187 0.82848 1.05008 0.94403 1.84750 1.17618 1.47864 1.80615 1.21086 0.95885 1.00096 0.95759 0.92765 0.90463 0.93106 0.92240 0.90526 0.93405 0.93657 0.90524 0.92114 0.84783 0.87284 0.76080 0.90963 0.74584 0.83239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 7.13 71.98 0.51 -2.46 16 2 C -0.02 -0.48 0.85 -52.93 -0.05 -0.53 16 3 C -0.13 -2.48 8.29 71.98 0.60 -1.88 16 4 C -0.14 -2.55 8.28 71.98 0.60 -1.95 16 5 C -0.09 -2.86 4.77 -19.82 -0.09 -2.95 16 6 C -0.11 -3.96 8.96 22.27 0.20 -3.76 16 7 C -0.16 -7.28 8.71 22.40 0.20 -7.09 16 8 C 0.13 5.98 6.45 38.39 0.25 6.23 16 9 N -0.69 -33.54 5.26 -311.02 -1.64 -35.17 16 10 C 0.53 30.95 7.38 85.12 0.63 31.58 16 11 O -0.61 -40.18 12.04 -4.57 -0.06 -40.23 16 12 C -0.57 -31.83 9.32 23.62 0.22 -31.61 16 13 H 0.09 4.46 7.85 -2.91 -0.02 4.44 16 14 C 0.03 1.79 5.50 85.33 0.47 2.25 16 15 N -0.80 -47.60 11.73 21.85 0.26 -47.34 16 16 Si 1.00 39.78 29.56 68.60 2.03 41.81 16 17 H -0.25 -9.15 7.11 99.48 0.71 -8.44 16 18 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 20 C 0.04 1.57 6.73 22.66 0.15 1.73 16 21 O -0.50 -15.49 12.92 -92.78 -1.20 -16.68 16 22 C -0.11 -3.32 8.64 22.34 0.19 -3.13 16 23 H 0.05 1.16 7.50 -2.39 -0.02 1.14 16 24 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.13 7.51 -2.38 -0.02 1.11 16 26 H 0.06 1.06 7.38 -2.39 -0.02 1.04 16 27 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.06 1.08 7.38 -2.39 -0.02 1.06 16 32 H 0.13 4.40 5.87 -2.91 -0.02 4.39 16 33 H 0.11 6.08 5.78 -2.91 -0.02 6.06 16 34 H 0.40 17.47 8.30 -92.71 -0.77 16.70 16 35 H 0.28 14.93 8.29 -92.71 -0.77 14.16 16 36 H 0.40 9.14 9.06 -74.06 -0.67 8.47 16 37 H 0.15 3.59 7.09 -2.91 -0.02 3.57 16 Total: -1.00 -73.96 306.54 2.93 -71.02 By element: Atomic # 1 Polarization: 40.50 SS G_CDS: -0.33 Total: 40.17 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: 3.87 Total: -13.57 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -1.38 Total: -82.51 kcal Atomic # 8 Polarization: -55.66 SS G_CDS: -1.25 Total: -56.92 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -73.96 2.93 -71.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334291609.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.574 kcal (2) G-P(sol) polarization free energy of solvation -73.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds