Wall clock time and date at job start Mon Mar 30 2020 07:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99968 * 2 1 4 4 H 1.48500 * 109.46907 * 240.00272 * 3 2 1 5 5 H 1.48505 * 109.46691 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47483 * 119.99558 * 3 2 1 7 7 C 1.37879 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00210 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99748 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46980 * 179.97438 * 9 7 2 11 11 C 1.46842 * 110.99827 * 170.00012 * 10 9 7 12 12 C 1.53039 * 109.52274 * 185.83861 * 11 10 9 13 13 C 1.53113 * 109.27854 * 300.82652 * 12 11 10 14 14 F 1.39898 * 109.52257 * 297.68004 * 13 12 11 15 15 C 1.50704 * 109.52371 * 177.56103 * 13 12 11 16 16 C 1.38234 * 120.00277 * 165.00013 * 15 13 12 17 17 C 1.38230 * 119.99885 * 180.02562 * 16 15 13 18 18 C 1.38235 * 120.00326 * 359.97438 * 17 16 15 19 19 C 1.38234 * 119.99814 * 359.97438 * 18 17 16 20 20 C 1.38235 * 119.99518 * 345.01695 * 15 13 12 21 21 C 1.53112 * 109.16609 * 57.65152 * 13 12 11 22 22 C 1.46841 * 110.99921 * 294.21372 * 10 9 7 23 23 H 0.96995 * 120.00077 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46480 * 60.00278 * 9 7 2 25 25 H 1.08997 * 109.47082 * 300.00390 * 9 7 2 26 26 H 1.09001 * 109.46363 * 65.82557 * 11 10 9 27 27 H 1.09001 * 109.46409 * 305.85939 * 11 10 9 28 28 H 1.08995 * 109.50371 * 180.88051 * 12 11 10 29 29 H 1.09007 * 109.49861 * 60.76453 * 12 11 10 30 30 H 1.07992 * 119.99701 * 359.97438 * 16 15 13 31 31 H 1.08000 * 120.00356 * 179.97438 * 17 16 15 32 32 H 1.08000 * 120.00616 * 179.70664 * 18 17 16 33 33 H 1.08001 * 120.00299 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.00423 * 359.97438 * 20 15 13 35 35 H 1.08999 * 109.50343 * 62.28740 * 21 13 12 36 36 H 1.08999 * 109.51092 * 182.40536 * 21 13 12 37 37 H 1.09000 * 109.46384 * 294.17476 * 22 10 9 38 38 H 1.09001 * 109.46985 * 54.14396 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6158 0.0005 11 6 1.5216 -4.8930 0.2386 12 6 2.5581 -6.0105 0.3767 13 6 3.3920 -6.0878 -0.9051 14 9 2.5620 -6.4106 -1.9840 15 6 4.4536 -7.1464 -0.7522 16 6 5.1249 -7.6179 -1.8649 17 6 6.0983 -8.5893 -1.7246 18 6 6.4008 -9.0889 -0.4717 19 6 5.7303 -8.6166 0.6410 20 6 4.7558 -7.6462 0.5007 21 6 4.0550 -4.7307 -1.1560 22 6 2.9751 -3.6503 -1.2497 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 0.8604 -5.1127 -0.5997 27 1 0.9355 -4.8259 1.1552 28 1 2.0493 -6.9609 0.5378 29 1 3.2110 -5.7984 1.2234 30 1 4.8882 -7.2279 -2.8437 31 1 6.6225 -8.9580 -2.5939 32 1 7.1580 -9.8512 -0.3626 33 1 5.9663 -9.0072 1.6199 34 1 4.2315 -7.2777 1.3700 35 1 4.7315 -4.4985 -0.3335 36 1 4.6157 -4.7666 -2.0900 37 1 2.3071 -3.8757 -2.0811 38 1 3.4448 -2.6806 -1.4142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336149720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:10 Heat of formation + Delta-G solvation = -25.860330 kcal Electronic energy + Delta-G solvation = -19862.539748 eV Core-core repulsion = 16811.710427 eV Total energy + Delta-G solvation = -3050.829321 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.52269 -39.41320 -37.64680 -33.87934 -32.35075 -31.25900 -30.37101 -29.92852 -26.71271 -24.27062 -23.35129 -22.20444 -21.75680 -20.69644 -19.12601 -17.39626 -16.31869 -15.81496 -15.71053 -15.18581 -14.80203 -14.55717 -14.26387 -14.09923 -13.73111 -13.52151 -13.41002 -12.78123 -12.30760 -12.17216 -12.14892 -11.75611 -11.63389 -11.33190 -11.15549 -11.02379 -10.75761 -10.71808 -10.51354 -10.11917 -10.03457 -9.69188 -9.18455 -9.01913 -8.84576 -8.42701 -7.23725 -6.01940 -4.03571 1.20155 1.29998 3.33964 3.38009 3.40769 3.65684 4.37701 4.42282 4.60593 4.78153 4.85876 4.91832 4.95777 5.00782 5.25657 5.33777 5.36828 5.47118 5.57038 5.74979 5.77815 5.90022 5.91324 5.93677 6.05389 6.16907 6.29553 6.35746 6.38726 6.40990 6.56631 6.63447 6.71895 6.87421 7.30084 7.36740 7.79844 8.08979 8.19868 8.54950 9.03623 9.60581 11.08960 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.036762 B = 0.004336 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.476113 B = 6455.516658 C = 6627.868374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.898 3.102 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.053 3.947 12 C -0.132 4.132 13 C 0.162 3.838 14 F -0.204 7.204 15 C -0.105 4.105 16 C -0.101 4.101 17 C -0.123 4.123 18 C -0.121 4.121 19 C -0.123 4.123 20 C -0.105 4.105 21 C -0.128 4.128 22 C 0.063 3.937 23 H 0.262 0.738 24 H -0.008 1.008 25 H 0.031 0.969 26 H 0.028 0.972 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.026 0.974 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.441 -16.834 -0.950 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.261 5.261 11 C -0.076 4.076 12 C -0.169 4.169 13 C 0.144 3.856 14 F -0.185 7.185 15 C -0.105 4.105 16 C -0.119 4.119 17 C -0.141 4.141 18 C -0.139 4.139 19 C -0.141 4.141 20 C -0.123 4.123 21 C -0.166 4.166 22 C -0.065 4.065 23 H 0.071 0.929 24 H 0.009 0.991 25 H 0.049 0.951 26 H 0.046 0.954 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.572 -16.630 -0.594 19.715 hybrid contribution -0.228 0.727 -0.770 1.083 sum 10.344 -15.904 -1.364 19.021 Atomic orbital electron populations 1.69948 1.06076 1.26893 1.50908 1.24989 0.94853 0.99294 0.95434 0.86564 0.79439 0.82778 0.78638 1.20285 1.21365 1.20156 1.21123 0.93437 0.89935 1.50209 0.91895 1.19708 0.90047 0.87219 0.96193 1.62087 1.27920 1.02640 1.33460 1.21990 0.94715 0.90127 1.00779 1.22241 0.98732 0.99479 0.96494 1.19744 0.87402 0.93373 0.85058 1.92834 1.73820 1.94031 1.57800 1.20282 0.98153 0.97826 0.94258 1.21014 0.95535 0.96791 0.98551 1.21117 0.98016 0.97422 0.97511 1.21175 0.99843 1.00008 0.92854 1.21155 0.96615 0.97524 0.98761 1.21226 0.97613 0.96418 0.97074 1.22214 0.99138 0.92427 1.02832 1.21925 0.94798 0.98557 0.91249 0.92859 0.99065 0.95090 0.95362 0.90753 0.91041 0.89266 0.85842 0.86036 0.86190 0.85915 0.85061 0.89568 0.91209 0.95561 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.25 8.43 -34.44 -0.29 -14.54 16 8 H 0.06 1.73 7.12 -52.49 -0.37 1.36 16 9 C 0.19 5.08 4.72 -4.97 -0.02 5.05 16 10 N -0.54 -11.60 4.65 -236.11 -1.10 -12.69 16 11 C 0.05 0.97 5.35 -3.84 -0.02 0.95 16 12 C -0.13 -1.96 4.05 -26.65 -0.11 -2.07 16 13 C 0.16 2.46 1.02 -91.65 -0.09 2.36 16 14 F -0.20 -3.48 15.62 2.25 0.04 -3.45 16 15 C -0.10 -1.38 4.93 -104.62 -0.52 -1.90 16 16 C -0.10 -1.23 9.39 -39.59 -0.37 -1.60 16 17 C -0.12 -1.27 10.05 -39.59 -0.40 -1.66 16 18 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 19 C -0.12 -1.24 10.05 -39.58 -0.40 -1.63 16 20 C -0.11 -1.23 9.10 -39.58 -0.36 -1.59 16 21 C -0.13 -2.04 5.10 -26.65 -0.14 -2.18 16 22 C 0.06 1.25 5.18 -3.83 -0.02 1.23 16 23 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 24 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 25 H 0.03 0.86 7.99 -51.93 -0.41 0.45 16 26 H 0.03 0.55 7.88 -51.93 -0.41 0.14 16 27 H 0.07 1.33 8.02 -51.93 -0.42 0.92 16 28 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.24 6.70 -51.92 -0.35 0.89 16 30 H 0.12 1.45 8.00 -52.49 -0.42 1.03 16 31 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 32 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 33 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.13 1.39 5.90 -52.49 -0.31 1.08 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.03 0.55 7.88 -51.93 -0.41 0.14 16 38 H 0.09 1.90 6.70 -51.93 -0.35 1.56 16 LS Contribution 308.50 15.07 4.65 4.65 Total: -1.00 -30.43 308.50 -9.47 -39.90 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.54 Total: -1.25 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -3.23 Total: -17.66 kcal Atomic # 7 Polarization: -38.41 SS G_CDS: -0.36 Total: -38.77 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.04 Total: -3.45 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.43 -9.47 -39.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336149720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.038 kcal (2) G-P(sol) polarization free energy of solvation -30.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds