Wall clock time and date at job start Mon Mar 30 2020 07:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99968 * 2 1 4 4 H 1.48500 * 109.46907 * 240.00272 * 3 2 1 5 5 H 1.48505 * 109.46691 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47483 * 119.99558 * 3 2 1 7 7 C 1.37879 * 120.00318 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00210 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99748 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.46980 * 179.97438 * 9 7 2 11 11 C 1.46842 * 110.99827 * 170.00012 * 10 9 7 12 12 C 1.53039 * 109.52274 * 185.83861 * 11 10 9 13 13 C 1.53113 * 109.27854 * 300.82652 * 12 11 10 14 14 F 1.39898 * 109.52257 * 297.68004 * 13 12 11 15 15 C 1.50704 * 109.52371 * 177.56103 * 13 12 11 16 16 C 1.38234 * 120.00277 * 165.00013 * 15 13 12 17 17 C 1.38230 * 119.99885 * 180.02562 * 16 15 13 18 18 C 1.38235 * 120.00326 * 359.97438 * 17 16 15 19 19 C 1.38234 * 119.99814 * 359.97438 * 18 17 16 20 20 C 1.38235 * 119.99518 * 345.01695 * 15 13 12 21 21 C 1.53112 * 109.16609 * 57.65152 * 13 12 11 22 22 C 1.46841 * 110.99921 * 294.21372 * 10 9 7 23 23 H 0.96995 * 120.00077 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46480 * 60.00278 * 9 7 2 25 25 H 1.08997 * 109.47082 * 300.00390 * 9 7 2 26 26 H 1.09001 * 109.46363 * 65.82557 * 11 10 9 27 27 H 1.09001 * 109.46409 * 305.85939 * 11 10 9 28 28 H 1.08995 * 109.50371 * 180.88051 * 12 11 10 29 29 H 1.09007 * 109.49861 * 60.76453 * 12 11 10 30 30 H 1.07992 * 119.99701 * 359.97438 * 16 15 13 31 31 H 1.08000 * 120.00356 * 179.97438 * 17 16 15 32 32 H 1.08000 * 120.00616 * 179.70664 * 18 17 16 33 33 H 1.08001 * 120.00299 * 179.97438 * 19 18 17 34 34 H 1.07997 * 120.00423 * 359.97438 * 20 15 13 35 35 H 1.08999 * 109.50343 * 62.28740 * 21 13 12 36 36 H 1.08999 * 109.51092 * 182.40536 * 21 13 12 37 37 H 1.09000 * 109.46384 * 294.17476 * 22 10 9 38 38 H 1.09001 * 109.46985 * 54.14396 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6158 0.0005 11 6 1.5216 -4.8930 0.2386 12 6 2.5581 -6.0105 0.3767 13 6 3.3920 -6.0878 -0.9051 14 9 2.5620 -6.4106 -1.9840 15 6 4.4536 -7.1464 -0.7522 16 6 5.1249 -7.6179 -1.8649 17 6 6.0983 -8.5893 -1.7246 18 6 6.4008 -9.0889 -0.4717 19 6 5.7303 -8.6166 0.6410 20 6 4.7558 -7.6462 0.5007 21 6 4.0550 -4.7307 -1.1560 22 6 2.9751 -3.6503 -1.2497 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6240 -2.5567 0.8902 26 1 0.8604 -5.1127 -0.5997 27 1 0.9355 -4.8259 1.1552 28 1 2.0493 -6.9609 0.5378 29 1 3.2110 -5.7984 1.2234 30 1 4.8882 -7.2279 -2.8437 31 1 6.6225 -8.9580 -2.5939 32 1 7.1580 -9.8512 -0.3626 33 1 5.9663 -9.0072 1.6199 34 1 4.2315 -7.2777 1.3700 35 1 4.7315 -4.4985 -0.3335 36 1 4.6157 -4.7666 -2.0900 37 1 2.3071 -3.8757 -2.0811 38 1 3.4448 -2.6806 -1.4142 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336149720.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:10 Heat of formation + Delta-G solvation = -43.069897 kcal Electronic energy + Delta-G solvation = -19863.286011 eV Core-core repulsion = 16811.710427 eV Total energy + Delta-G solvation = -3051.575584 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.79876 -40.35608 -39.12892 -35.50659 -34.14637 -32.32850 -31.53891 -31.21799 -28.55960 -25.77209 -24.61336 -23.65986 -22.93107 -22.04194 -20.49487 -18.48046 -18.35266 -17.15471 -16.75442 -16.59494 -16.33526 -15.93614 -15.64854 -15.25666 -15.18413 -14.95157 -14.34200 -14.16975 -13.87352 -13.58627 -13.42027 -13.21102 -13.03442 -12.86291 -12.73520 -12.43534 -12.40218 -12.15150 -12.00324 -11.84487 -11.53571 -11.19060 -11.08072 -10.61502 -9.81856 -9.72653 -9.08480 -8.20929 -6.31632 0.36626 0.50200 1.41461 1.44948 1.52829 2.40205 2.83298 3.10664 3.19471 3.32517 3.49546 3.59072 3.88060 4.13743 4.15130 4.18426 4.26204 4.35290 4.43904 4.52948 4.62869 4.66085 4.68717 4.76913 4.89607 4.98142 5.02131 5.05627 5.13620 5.17606 5.27319 5.29354 5.56275 5.61809 5.63532 5.66836 6.02635 6.09390 6.27374 6.58375 6.83771 7.38162 8.90411 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.036762 B = 0.004336 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 761.476113 B = 6455.516658 C = 6627.868374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.066 0.934 9 C 0.206 3.794 10 N -0.536 5.536 11 C 0.049 3.951 12 C -0.122 4.122 13 C 0.161 3.839 14 F -0.219 7.219 15 C -0.122 4.122 16 C -0.118 4.118 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.124 4.124 20 C -0.115 4.115 21 C -0.118 4.118 22 C 0.065 3.935 23 H 0.265 0.735 24 H -0.043 1.043 25 H 0.008 0.992 26 H 0.013 0.987 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.139 0.861 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.008 0.992 38 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.029 -18.126 -0.283 22.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.084 0.916 9 C 0.080 3.920 10 N -0.261 5.261 11 C -0.079 4.079 12 C -0.160 4.160 13 C 0.143 3.857 14 F -0.200 7.200 15 C -0.123 4.123 16 C -0.136 4.136 17 C -0.143 4.143 18 C -0.136 4.136 19 C -0.141 4.141 20 C -0.133 4.133 21 C -0.156 4.156 22 C -0.064 4.064 23 H 0.073 0.927 24 H -0.026 1.026 25 H 0.026 0.974 26 H 0.031 0.969 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.123 0.877 30 H 0.137 0.863 31 H 0.162 0.838 32 H 0.167 0.833 33 H 0.166 0.834 34 H 0.157 0.843 35 H 0.112 0.888 36 H 0.103 0.897 37 H 0.027 0.973 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 13.175 -17.948 0.070 22.265 hybrid contribution -1.040 1.039 -0.990 1.772 sum 12.135 -16.909 -0.919 20.833 Atomic orbital electron populations 1.70087 1.07856 1.28032 1.51680 1.25947 0.95734 1.03314 0.94694 0.85407 0.78128 0.77708 0.79206 1.19239 1.20892 1.19056 1.21430 0.93702 0.90879 1.50256 0.91588 1.19384 0.90154 0.89056 0.93387 1.62040 1.26887 1.02820 1.34324 1.22099 0.95784 0.89858 1.00162 1.22208 0.97979 0.98627 0.97138 1.19786 0.87818 0.93666 0.84397 1.92806 1.74435 1.94119 1.58631 1.20093 0.98375 0.98325 0.95474 1.21125 0.96463 0.97806 0.98179 1.21415 0.97353 0.96611 0.98925 1.21584 0.99795 0.99907 0.92270 1.21501 0.95703 0.96659 1.00263 1.21390 0.98332 0.96979 0.96588 1.22122 0.97772 0.91642 1.04039 1.21903 0.95265 0.99375 0.89834 0.92653 1.02560 0.97428 0.96918 0.90554 0.88904 0.87731 0.86300 0.83845 0.83281 0.83354 0.84306 0.88780 0.89667 0.97326 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.28 13.29 21.45 0.28 -56.99 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 44.51 29.54 68.60 2.03 46.53 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.52 -30.14 8.43 25.60 0.22 -29.93 16 8 H 0.07 3.67 7.12 -2.91 -0.02 3.65 16 9 C 0.21 11.39 4.72 85.56 0.40 11.79 16 10 N -0.54 -23.92 4.65 -900.92 -4.19 -28.11 16 11 C 0.05 1.86 5.35 86.33 0.46 2.32 16 12 C -0.12 -3.50 4.05 30.65 0.12 -3.38 16 13 C 0.16 4.76 1.02 -11.46 -0.01 4.74 16 14 F -0.22 -7.51 15.62 44.97 0.70 -6.81 16 15 C -0.12 -3.02 4.93 -19.86 -0.10 -3.12 16 16 C -0.12 -2.68 9.39 22.27 0.21 -2.47 16 17 C -0.13 -2.22 10.05 22.27 0.22 -1.99 16 18 C -0.12 -1.81 10.05 22.27 0.22 -1.59 16 19 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 20 C -0.12 -2.38 9.10 22.27 0.20 -2.18 16 21 C -0.12 -3.71 5.10 30.65 0.16 -3.55 16 22 C 0.06 2.64 5.18 86.33 0.45 3.09 16 23 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 24 H -0.04 -2.63 8.12 -2.39 -0.02 -2.65 16 25 H 0.01 0.45 7.99 -2.39 -0.02 0.43 16 26 H 0.01 0.51 7.88 -2.39 -0.02 0.49 16 27 H 0.08 2.80 8.02 -2.39 -0.02 2.78 16 28 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.10 2.70 6.70 -2.38 -0.02 2.69 16 30 H 0.12 2.70 8.00 -2.91 -0.02 2.68 16 31 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 32 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 33 H 0.15 1.65 8.06 -2.91 -0.02 1.62 16 34 H 0.14 2.55 5.90 -2.91 -0.02 2.54 16 35 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 36 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 37 H 0.01 0.37 7.88 -2.39 -0.02 0.35 16 38 H 0.07 3.18 6.70 -2.39 -0.02 3.16 16 Total: -1.00 -67.20 308.50 3.10 -64.10 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: 1.03 Total: 8.82 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 3.25 Total: -27.55 kcal Atomic # 7 Polarization: -81.20 SS G_CDS: -3.90 Total: -85.10 kcal Atomic # 9 Polarization: -7.51 SS G_CDS: 0.70 Total: -6.81 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.20 3.10 -64.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336149720.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.030 kcal (2) G-P(sol) polarization free energy of solvation -67.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds