Wall clock time and date at job start Mon Mar 30 2020 07:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99796 * 2 1 4 4 H 1.48495 * 109.46743 * 90.00698 * 3 2 1 5 5 H 1.48498 * 109.47133 * 330.00306 * 3 2 1 6 6 H 1.48504 * 109.46813 * 210.00493 * 3 2 1 7 7 C 1.37882 * 120.00333 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99376 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00211 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.46892 * 179.97438 * 9 7 2 11 11 N 1.46906 * 109.46956 * 179.97438 * 10 9 7 12 12 C 1.47440 * 110.99496 * 290.84201 * 11 10 9 13 13 C 1.54323 * 107.22943 * 236.73869 * 12 11 10 14 14 C 1.55137 * 103.02117 * 337.71959 * 13 12 11 15 15 F 1.39892 * 110.99080 * 277.55962 * 14 13 12 16 16 C 1.50701 * 110.98772 * 153.73921 * 14 13 12 17 17 C 1.38235 * 119.99739 * 176.97418 * 16 14 13 18 18 C 1.38240 * 120.00007 * 179.74818 * 17 16 14 19 19 C 1.38231 * 119.99909 * 0.55480 * 18 17 16 20 20 C 1.38231 * 119.99861 * 359.69850 * 19 18 17 21 21 C 1.38234 * 120.00204 * 357.25755 * 16 14 13 22 22 C 1.47839 * 110.99814 * 169.99917 * 11 10 9 23 23 H 0.97000 * 119.99600 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46711 * 299.99381 * 9 7 2 25 25 H 1.08995 * 109.47077 * 59.99308 * 9 7 2 26 26 H 1.09004 * 109.47236 * 299.99426 * 10 9 7 27 27 H 1.08995 * 109.47526 * 59.99949 * 10 9 7 28 28 H 1.08997 * 109.89416 * 356.14442 * 12 11 10 29 29 H 1.09003 * 109.88880 * 117.33969 * 12 11 10 30 30 H 1.08999 * 110.70729 * 219.33503 * 13 12 11 31 31 H 1.09005 * 110.85386 * 96.17598 * 13 12 11 32 32 H 1.08006 * 120.00248 * 359.97438 * 17 16 14 33 33 H 1.08004 * 119.99660 * 180.27778 * 18 17 16 34 34 H 1.07993 * 120.00160 * 179.72748 * 19 18 17 35 35 H 1.08007 * 120.00266 * 180.02562 * 20 19 18 36 36 H 1.07998 * 120.00069 * 359.97438 * 21 16 14 37 37 H 1.08998 * 110.37646 * 265.19065 * 22 11 10 38 38 H 1.08995 * 110.37879 * 27.53264 * 22 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 1.4001 5 1 1.4465 2.6527 -0.7000 6 1 3.5466 1.4403 -0.7002 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 7 5.4906 -2.6365 -0.0022 12 6 6.0178 -2.1472 -1.2892 13 6 6.9359 -3.2505 -1.8562 14 6 7.3259 -4.0636 -0.5939 15 9 8.3859 -3.4550 0.0866 16 6 7.6639 -5.4878 -0.9524 17 6 8.0984 -6.3623 0.0261 18 6 8.4035 -7.6701 -0.3018 19 6 8.2851 -8.1003 -1.6101 20 6 7.8556 -7.2244 -2.5895 21 6 7.5451 -5.9181 -2.2607 22 6 6.0206 -3.9956 0.2376 23 1 -0.4849 0.8401 0.0004 24 1 3.8745 -0.6800 -0.8912 25 1 3.8753 -0.6803 0.8887 26 1 3.6587 -3.1501 0.8893 27 1 3.6579 -3.1505 -0.8907 28 1 5.1955 -1.9583 -1.9792 29 1 6.5903 -1.2330 -1.1320 30 1 7.8197 -2.8147 -2.3222 31 1 6.3966 -3.8768 -2.5668 32 1 8.1960 -6.0248 1.0474 33 1 8.7387 -8.3545 0.4636 34 1 8.5277 -9.1208 -1.8670 35 1 7.7627 -7.5606 -3.6117 36 1 7.2096 -5.2338 -3.0259 37 1 6.2374 -4.1371 1.2964 38 1 5.3105 -4.7465 -0.1088 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367027642.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:07 Heat of formation + Delta-G solvation = -18.192469 kcal Electronic energy + Delta-G solvation = -19510.814376 eV Core-core repulsion = 16460.317558 eV Total energy + Delta-G solvation = -3050.496818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.62525 -39.66155 -38.13789 -33.89018 -32.49581 -31.30983 -30.73989 -29.27430 -27.71497 -24.59920 -23.26629 -22.59816 -21.33225 -20.43831 -19.52530 -17.69995 -16.80581 -16.40198 -15.82799 -15.32854 -14.93704 -14.67623 -14.39403 -14.17008 -13.80353 -13.67357 -13.42810 -12.89429 -12.82795 -12.69819 -12.41379 -12.16740 -11.61377 -11.38809 -11.28784 -11.25965 -10.82743 -10.77565 -10.59854 -10.10893 -9.76373 -9.74798 -9.21252 -9.16508 -9.05797 -8.52937 -7.92149 -6.04223 -4.02614 1.03378 1.15647 3.34004 3.40732 3.46064 3.49620 3.99721 4.17110 4.40145 4.47038 4.61355 4.62701 4.76087 4.82946 4.92697 5.14959 5.25017 5.30285 5.31347 5.45872 5.64771 5.66853 5.73381 5.78089 5.92447 6.00188 6.05287 6.18973 6.22453 6.25806 6.32099 6.36942 6.71671 6.74136 7.10660 7.22114 7.48151 7.57790 7.83506 8.52619 8.99431 9.58354 11.09041 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.037123 B = 0.004059 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.065056 B = 6897.365368 C = 7113.885123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.068 3.932 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.070 0.930 9 C -0.006 4.006 10 C 0.065 3.935 11 N -0.529 5.529 12 C 0.042 3.958 13 C -0.163 4.163 14 C 0.152 3.848 15 F -0.190 7.190 16 C -0.104 4.104 17 C -0.097 4.097 18 C -0.121 4.121 19 C -0.116 4.116 20 C -0.121 4.121 21 C -0.106 4.106 22 C 0.033 3.967 23 H 0.263 0.737 24 H 0.016 0.984 25 H 0.021 0.979 26 H 0.068 0.932 27 H 0.030 0.970 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.131 0.869 37 H 0.089 0.911 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.190 -14.153 -4.434 23.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.089 0.911 9 C -0.044 4.044 10 C -0.062 4.062 11 N -0.253 5.253 12 C -0.086 4.086 13 C -0.201 4.201 14 C 0.133 3.867 15 F -0.170 7.170 16 C -0.105 4.105 17 C -0.115 4.115 18 C -0.139 4.139 19 C -0.134 4.134 20 C -0.139 4.139 21 C -0.124 4.124 22 C -0.095 4.095 23 H 0.073 0.927 24 H 0.034 0.966 25 H 0.039 0.961 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.108 0.892 32 H 0.144 0.856 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.149 0.851 37 H 0.107 0.893 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.194 -13.669 -4.008 23.107 hybrid contribution 0.101 0.374 -0.548 0.671 sum 18.295 -13.295 -4.556 23.070 Atomic orbital electron populations 1.69916 1.06322 1.26925 1.51128 1.24994 0.94712 0.99195 0.94441 0.86749 0.80310 0.83420 0.78657 1.20200 1.21497 1.18920 1.21080 0.89392 0.94503 1.51097 0.91147 1.19553 0.96402 0.91530 0.96935 1.22349 0.83247 1.00626 0.99937 1.63713 1.10630 1.19761 1.31202 1.22864 0.97794 0.97475 0.90434 1.23530 1.01499 0.98357 0.96722 1.20573 0.85130 0.88383 0.92646 1.92871 1.58356 1.84384 1.81363 1.19954 1.01482 0.94659 0.94413 1.21042 0.97794 0.93326 0.99360 1.21156 1.00321 0.95760 0.96646 1.21220 0.99259 0.99692 0.93258 1.21167 0.99635 0.93543 0.99603 1.21251 0.99202 0.96393 0.95587 1.23572 0.93298 0.92035 1.00619 0.92725 0.96608 0.96073 0.91388 0.95193 0.91282 0.90369 0.89528 0.89233 0.85621 0.85760 0.85960 0.85753 0.85115 0.89318 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 22.07 27.47 -169.99 -4.67 17.41 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -14.99 9.66 -34.44 -0.33 -15.32 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 9 C -0.01 -0.16 4.06 -27.89 -0.11 -0.27 16 10 C 0.07 1.33 4.47 -3.82 -0.02 1.31 16 11 N -0.53 -9.39 5.16 -231.26 -1.19 -10.58 16 12 C 0.04 0.67 6.20 -2.84 -0.02 0.65 16 13 C -0.16 -2.04 5.51 -24.91 -0.14 -2.18 16 14 C 0.15 2.03 1.38 -89.63 -0.12 1.90 16 15 F -0.19 -2.89 16.88 2.25 0.04 -2.85 16 16 C -0.10 -1.23 5.03 -104.62 -0.53 -1.76 16 17 C -0.10 -1.06 9.52 -39.58 -0.38 -1.43 16 18 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 19 C -0.12 -1.00 10.05 -39.59 -0.40 -1.40 16 20 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 21 C -0.11 -1.11 9.08 -39.58 -0.36 -1.47 16 22 C 0.03 0.49 5.88 -2.30 -0.01 0.48 16 23 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 24 H 0.02 0.38 6.15 -51.93 -0.32 0.06 16 25 H 0.02 0.53 7.57 -51.93 -0.39 0.13 16 26 H 0.07 1.39 8.08 -51.93 -0.42 0.97 16 27 H 0.03 0.60 7.98 -51.93 -0.41 0.19 16 28 H 0.07 1.13 6.88 -51.93 -0.36 0.78 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 0.99 5.92 -51.93 -0.31 0.68 16 32 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 33 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 36 H 0.13 1.19 5.64 -52.49 -0.30 0.90 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.06 0.89 7.70 -51.93 -0.40 0.49 16 LS Contribution 309.49 15.07 4.66 4.66 Total: -1.00 -31.76 309.49 -9.15 -40.91 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.45 Total: -1.70 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: -3.31 Total: -20.59 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: -0.42 Total: -37.84 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.04 Total: -2.85 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.76 -9.15 -40.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367027642.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.715 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds