Wall clock time and date at job start Mon Mar 30 2020 07:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35683 * 116.99615 * 2 1 4 4 C 1.38922 * 119.67940 * 179.97438 * 3 2 1 5 5 C 1.38377 * 119.10599 * 179.74807 * 4 3 2 6 6 C 1.38828 * 118.48930 * 0.53360 * 5 4 3 7 7 C 1.50697 * 120.35698 * 179.73402 * 6 5 4 8 8 H 1.08992 * 109.48113 * 339.70505 * 7 6 5 9 9 C 1.53096 * 109.48058 * 99.72976 * 7 6 5 10 10 C 1.53178 * 109.16278 * 177.60246 * 9 7 6 11 11 C 1.53178 * 109.03511 * 303.01594 * 10 9 7 12 12 C 1.53093 * 109.16255 * 56.98447 * 11 10 9 13 13 H 1.09002 * 109.48198 * 62.37219 * 12 11 10 14 14 C 1.50700 * 109.47903 * 182.39629 * 12 11 10 15 15 H 1.07997 * 119.99922 * 359.97151 * 14 12 11 16 16 C 1.37882 * 119.99816 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99969 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99922 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46848 * 60.00467 * 18 16 14 20 20 H 1.48502 * 109.47079 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47117 * 300.00416 * 18 16 14 22 22 O 1.42904 * 109.42351 * 302.38111 * 12 11 10 23 23 C 1.38054 * 119.28764 * 359.46696 * 6 5 4 24 24 N 1.31966 * 120.82963 * 0.27230 * 23 6 5 25 25 H 1.09008 * 109.46812 * 299.99410 * 1 2 3 26 26 H 1.08997 * 109.47160 * 59.99682 * 1 2 3 27 27 H 1.08993 * 109.46770 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.44749 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.75602 * 180.29656 * 5 4 3 30 30 H 1.08999 * 109.52155 * 57.69455 * 9 7 6 31 31 H 1.09004 * 109.51758 * 297.51000 * 9 7 6 32 32 H 1.09002 * 109.54068 * 183.15004 * 10 9 7 33 33 H 1.08992 * 109.61712 * 62.93144 * 10 9 7 34 34 H 1.09000 * 109.52619 * 297.07706 * 11 10 9 35 35 H 1.08998 * 109.51869 * 176.88944 * 11 10 9 36 36 H 0.97003 * 119.99695 * 179.97438 * 17 16 14 37 37 H 1.07989 * 119.58202 * 180.25162 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4327 1.2740 0.0005 5 6 4.0484 2.5132 -0.0048 6 6 3.2504 3.6492 0.0009 7 6 3.8767 5.0199 0.0015 8 1 4.9057 4.9492 0.3536 9 6 3.8614 5.5888 -1.4198 10 6 4.4446 7.0051 -1.4008 11 6 3.6382 7.8643 -0.4220 12 6 3.6621 7.2076 0.9607 13 1 4.6884 7.1655 1.3254 14 6 2.8221 8.0160 1.9156 15 1 2.3215 8.9089 1.5714 16 6 2.6926 7.6156 3.2286 17 7 3.3026 6.5284 3.6478 18 14 1.6519 8.6180 4.4124 19 1 0.2536 8.6757 3.9154 20 1 1.6751 7.9807 5.7535 21 1 2.1999 9.9947 4.5095 22 8 3.1350 5.8826 0.8666 23 6 1.8770 3.5098 0.0004 24 7 1.3186 2.3141 0.0000 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0276 0.0005 28 1 4.0229 0.3696 0.0005 29 1 5.1254 2.5948 -0.0093 30 1 2.8360 5.6220 -1.7879 31 1 4.4632 4.9558 -2.0720 32 1 4.3853 7.4373 -2.3997 33 1 5.4858 6.9678 -1.0809 34 1 2.6083 7.9435 -0.7699 35 1 4.0804 8.8587 -0.3607 36 1 3.2118 6.2470 4.5716 37 1 1.2517 4.3902 0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383653921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:02 Heat of formation + Delta-G solvation = -57.833066 kcal Electronic energy + Delta-G solvation = -19953.773856 eV Core-core repulsion = 16889.185303 eV Total energy + Delta-G solvation = -3064.588553 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.37351 -38.47856 -37.29916 -33.20762 -32.54021 -32.20571 -31.24711 -28.95915 -27.09926 -25.61775 -23.95712 -23.02314 -22.11467 -20.97485 -19.28226 -18.16488 -16.85197 -16.54941 -15.81610 -15.45085 -14.67876 -14.45013 -14.30087 -14.21599 -13.86748 -13.58983 -13.21388 -13.01657 -12.65217 -12.49537 -12.03649 -11.81993 -11.41514 -11.03398 -10.92308 -10.90887 -10.69802 -10.41169 -10.31936 -9.91067 -9.88747 -9.54535 -9.21377 -8.89800 -8.53679 -8.15655 -7.82000 -6.02721 -4.15285 1.50058 1.57837 3.27357 3.31898 3.36989 3.39034 4.08670 4.40885 4.64911 4.79509 5.21085 5.27547 5.33893 5.36197 5.38833 5.45185 5.53122 5.56558 5.65606 5.73906 5.87766 5.98766 6.05854 6.16530 6.26809 6.31076 6.44043 6.63779 6.68911 6.74548 6.82589 6.87108 6.90428 7.44894 7.49001 7.88068 8.17357 8.26137 8.74737 9.08398 9.55331 11.04526 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018710 B = 0.006037 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.152661 B = 4637.302710 C = 5618.688965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.315 6.315 3 C 0.303 3.697 4 C -0.194 4.194 5 C -0.039 4.039 6 C -0.143 4.143 7 C 0.131 3.869 8 H 0.051 0.949 9 C -0.139 4.139 10 C -0.120 4.120 11 C -0.144 4.144 12 C 0.220 3.780 13 H 0.014 0.986 14 C -0.528 4.528 15 H 0.064 0.936 16 C 0.079 3.921 17 N -0.858 5.858 18 Si 0.891 3.109 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.276 1.276 22 O -0.349 6.349 23 C 0.168 3.832 24 N -0.542 5.542 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.090 0.910 28 H 0.136 0.864 29 H 0.138 0.862 30 H 0.064 0.936 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.055 0.945 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.261 0.739 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.235 -8.621 -8.807 12.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.222 6.222 3 C 0.125 3.875 4 C -0.215 4.215 5 C -0.065 4.065 6 C -0.145 4.145 7 C 0.071 3.929 8 H 0.069 0.931 9 C -0.177 4.177 10 C -0.158 4.158 11 C -0.182 4.182 12 C 0.165 3.835 13 H 0.032 0.968 14 C -0.565 4.565 15 H 0.082 0.918 16 C -0.127 4.127 17 N -0.494 5.494 18 Si 0.718 3.282 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.201 1.201 22 O -0.269 6.269 23 C 0.013 3.987 24 N -0.265 5.265 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.109 0.891 28 H 0.154 0.846 29 H 0.156 0.844 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.705 -9.151 -8.548 12.542 hybrid contribution 0.315 0.690 0.594 0.964 sum -0.390 -8.460 -7.954 11.618 Atomic orbital electron populations 1.22782 0.77738 1.02316 1.02507 1.86185 1.22561 1.25059 1.88438 1.19820 0.89406 0.84716 0.93584 1.20894 0.91900 0.99071 1.09620 1.21228 1.00325 0.90724 0.94182 1.20687 0.94977 0.95726 1.03121 1.20468 0.94938 0.87039 0.90458 0.93102 1.22171 1.01318 0.96728 0.97517 1.21616 0.99541 0.95394 0.99207 1.22266 0.99272 0.98622 0.98070 1.19715 0.95142 0.79179 0.89465 0.96788 1.20956 1.33503 1.08768 0.93261 0.91807 1.25065 0.94852 0.94548 0.98255 1.70023 1.40850 1.22215 1.16322 0.86695 0.81152 0.80268 0.80068 1.20036 1.21218 1.20098 1.88387 1.52203 1.23127 1.63154 1.22335 0.92860 0.93030 0.90473 1.67361 1.40896 0.98847 1.19426 0.92354 0.92509 0.89119 0.84604 0.84423 0.91714 0.92558 0.93016 0.92601 0.92426 0.92406 0.92905 0.81727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.38 101.05 1.05 1.55 16 2 O -0.31 -4.72 10.48 -18.75 -0.20 -4.91 16 3 C 0.30 5.06 7.49 -17.12 -0.13 4.93 16 4 C -0.19 -2.92 10.04 -39.28 -0.39 -3.32 16 5 C -0.04 -0.61 9.81 -39.31 -0.39 -0.99 16 6 C -0.14 -2.60 4.99 -104.47 -0.52 -3.12 16 7 C 0.13 2.56 2.86 -27.83 -0.08 2.48 16 8 H 0.05 1.01 8.03 -51.93 -0.42 0.59 16 9 C -0.14 -2.33 5.40 -26.59 -0.14 -2.47 16 10 C -0.12 -2.02 6.03 -26.55 -0.16 -2.18 16 11 C -0.14 -2.94 5.36 -26.59 -0.14 -3.08 16 12 C 0.22 5.49 2.50 -27.84 -0.07 5.43 16 13 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 14 C -0.53 -14.51 8.79 -34.44 -0.30 -14.81 16 15 H 0.06 1.70 7.74 -52.49 -0.41 1.30 16 16 C 0.08 2.21 5.40 -17.82 -0.10 2.12 16 17 N -0.86 -25.09 12.84 55.43 0.71 -24.38 16 18 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 19 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 22 O -0.35 -8.60 8.78 -35.23 -0.31 -8.91 16 23 C 0.17 3.16 10.52 -17.56 -0.18 2.98 16 24 N -0.54 -9.81 9.22 -13.33 -0.12 -9.93 16 25 H 0.06 0.73 8.10 -51.92 -0.42 0.31 16 26 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.14 1.67 8.06 -52.49 -0.42 1.24 16 29 H 0.14 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 37 H 0.17 3.17 7.78 -52.49 -0.41 2.77 16 LS Contribution 311.06 15.07 4.69 4.69 Total: -1.00 -30.58 311.06 -7.25 -37.82 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -5.44 Total: -0.08 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -1.56 Total: -10.49 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.59 Total: -34.32 kcal Atomic # 8 Polarization: -13.32 SS G_CDS: -0.51 Total: -13.82 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -30.58 -7.25 -37.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383653921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.011 kcal (2) G-P(sol) polarization free energy of solvation -30.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds