Wall clock time and date at job start Mon Mar 30 2020 07:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35683 * 116.99615 * 2 1 4 4 C 1.38922 * 119.67940 * 179.97438 * 3 2 1 5 5 C 1.38377 * 119.10599 * 179.74807 * 4 3 2 6 6 C 1.38828 * 118.48930 * 0.53360 * 5 4 3 7 7 C 1.50697 * 120.35698 * 179.73402 * 6 5 4 8 8 H 1.08992 * 109.48113 * 339.70505 * 7 6 5 9 9 C 1.53096 * 109.48058 * 99.72976 * 7 6 5 10 10 C 1.53178 * 109.16278 * 177.60246 * 9 7 6 11 11 C 1.53178 * 109.03511 * 303.01594 * 10 9 7 12 12 C 1.53093 * 109.16255 * 56.98447 * 11 10 9 13 13 H 1.09002 * 109.48198 * 62.37219 * 12 11 10 14 14 C 1.50700 * 109.47903 * 182.39629 * 12 11 10 15 15 H 1.07997 * 119.99922 * 359.97151 * 14 12 11 16 16 C 1.37882 * 119.99816 * 179.97438 * 14 12 11 17 17 N 1.31517 * 119.99969 * 0.02562 * 16 14 12 18 18 Si 1.86800 * 119.99922 * 179.97438 * 16 14 12 19 19 H 1.48506 * 109.46848 * 60.00467 * 18 16 14 20 20 H 1.48502 * 109.47079 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47117 * 300.00416 * 18 16 14 22 22 O 1.42904 * 109.42351 * 302.38111 * 12 11 10 23 23 C 1.38054 * 119.28764 * 359.46696 * 6 5 4 24 24 N 1.31966 * 120.82963 * 0.27230 * 23 6 5 25 25 H 1.09008 * 109.46812 * 299.99410 * 1 2 3 26 26 H 1.08997 * 109.47160 * 59.99682 * 1 2 3 27 27 H 1.08993 * 109.46770 * 180.02562 * 1 2 3 28 28 H 1.07997 * 120.44749 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.75602 * 180.29656 * 5 4 3 30 30 H 1.08999 * 109.52155 * 57.69455 * 9 7 6 31 31 H 1.09004 * 109.51758 * 297.51000 * 9 7 6 32 32 H 1.09002 * 109.54068 * 183.15004 * 10 9 7 33 33 H 1.08992 * 109.61712 * 62.93144 * 10 9 7 34 34 H 1.09000 * 109.52619 * 297.07706 * 11 10 9 35 35 H 1.08998 * 109.51869 * 176.88944 * 11 10 9 36 36 H 0.97003 * 119.99695 * 179.97438 * 17 16 14 37 37 H 1.07989 * 119.58202 * 180.25162 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4327 1.2740 0.0005 5 6 4.0484 2.5132 -0.0048 6 6 3.2504 3.6492 0.0009 7 6 3.8767 5.0199 0.0015 8 1 4.9057 4.9492 0.3536 9 6 3.8614 5.5888 -1.4198 10 6 4.4446 7.0051 -1.4008 11 6 3.6382 7.8643 -0.4220 12 6 3.6621 7.2076 0.9607 13 1 4.6884 7.1655 1.3254 14 6 2.8221 8.0160 1.9156 15 1 2.3215 8.9089 1.5714 16 6 2.6926 7.6156 3.2286 17 7 3.3026 6.5284 3.6478 18 14 1.6519 8.6180 4.4124 19 1 0.2536 8.6757 3.9154 20 1 1.6751 7.9807 5.7535 21 1 2.1999 9.9947 4.5095 22 8 3.1350 5.8826 0.8666 23 6 1.8770 3.5098 0.0004 24 7 1.3186 2.3141 0.0000 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0276 0.0005 28 1 4.0229 0.3696 0.0005 29 1 5.1254 2.5948 -0.0093 30 1 2.8360 5.6220 -1.7879 31 1 4.4632 4.9558 -2.0720 32 1 4.3853 7.4373 -2.3997 33 1 5.4858 6.9678 -1.0809 34 1 2.6083 7.9435 -0.7699 35 1 4.0804 8.8587 -0.3607 36 1 3.2118 6.2470 4.5716 37 1 1.2517 4.3902 0.0006 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383653921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:02 Heat of formation + Delta-G solvation = -77.958265 kcal Electronic energy + Delta-G solvation = -19954.646550 eV Core-core repulsion = 16889.185303 eV Total energy + Delta-G solvation = -3065.461247 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.66535 -39.98169 -38.64042 -35.05531 -34.11356 -33.73919 -32.74714 -30.48445 -28.26723 -27.38639 -25.47343 -24.29226 -23.78602 -22.46471 -20.85049 -19.36554 -18.70553 -18.02592 -17.05782 -16.96560 -16.50868 -16.18265 -15.70688 -15.45843 -15.27588 -14.96306 -14.63967 -14.54332 -14.14786 -13.95459 -13.60830 -13.03827 -12.84169 -12.76291 -12.60412 -12.46857 -12.17775 -12.08914 -11.78966 -11.74579 -11.42940 -10.88506 -10.84110 -10.62673 -10.46396 -9.78560 -9.29108 -8.13862 -6.33267 0.18340 0.29050 1.40903 1.43445 1.50569 2.14698 2.41069 2.74281 3.03870 3.36048 3.52114 3.93227 4.03758 4.16301 4.17883 4.19565 4.27395 4.42068 4.43132 4.50577 4.50846 4.56746 4.74996 4.77861 4.89860 4.99430 5.01910 5.12865 5.21657 5.23324 5.31955 5.41859 5.46659 5.61395 5.80331 6.22215 6.24252 6.68842 6.84910 7.22834 7.42998 8.93151 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.018710 B = 0.006037 C = 0.004982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.152661 B = 4637.302710 C = 5618.688965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.317 6.317 3 C 0.292 3.708 4 C -0.185 4.185 5 C -0.033 4.033 6 C -0.159 4.159 7 C 0.126 3.874 8 H 0.046 0.954 9 C -0.131 4.131 10 C -0.114 4.114 11 C -0.138 4.138 12 C 0.217 3.783 13 H -0.017 1.017 14 C -0.550 4.550 15 H 0.064 0.936 16 C 0.027 3.973 17 N -0.895 5.895 18 Si 0.956 3.044 19 H -0.272 1.272 20 H -0.285 1.285 21 H -0.263 1.263 22 O -0.380 6.380 23 C 0.150 3.850 24 N -0.557 5.557 25 H 0.046 0.954 26 H 0.055 0.945 27 H 0.128 0.872 28 H 0.170 0.830 29 H 0.169 0.831 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.260 0.740 37 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.674 -9.581 -9.936 13.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.224 6.224 3 C 0.113 3.887 4 C -0.205 4.205 5 C -0.058 4.058 6 C -0.162 4.162 7 C 0.067 3.933 8 H 0.064 0.936 9 C -0.169 4.169 10 C -0.152 4.152 11 C -0.175 4.175 12 C 0.162 3.838 13 H 0.000 1.000 14 C -0.587 4.587 15 H 0.082 0.918 16 C -0.175 4.175 17 N -0.532 5.532 18 Si 0.780 3.220 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.188 1.188 22 O -0.300 6.300 23 C -0.005 4.005 24 N -0.281 5.281 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.146 0.854 28 H 0.188 0.812 29 H 0.186 0.814 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.271 -10.100 -9.694 14.002 hybrid contribution 0.171 0.877 0.915 1.279 sum -0.100 -9.223 -8.779 12.734 Atomic orbital electron populations 1.23021 0.76241 1.04604 1.01870 1.86195 1.24060 1.24018 1.88149 1.20212 0.90386 0.84796 0.93303 1.21286 0.91478 1.00121 1.07590 1.21560 1.01659 0.89883 0.92742 1.20671 0.94970 0.95910 1.04601 1.20663 0.94070 0.87205 0.91355 0.93646 1.22107 1.01805 0.97035 0.95932 1.21597 0.98997 0.94843 0.99719 1.22119 0.99819 0.99198 0.96410 1.19563 0.92726 0.79936 0.91595 0.99990 1.21421 1.33476 1.09423 0.94426 0.91753 1.25878 0.96020 0.95576 1.00046 1.70160 1.42585 1.23970 1.16489 0.85672 0.79419 0.79199 0.77690 1.19729 1.21031 1.18764 1.88271 1.53180 1.23431 1.65072 1.22109 0.93198 0.92968 0.92236 1.67287 1.41602 0.99042 1.20153 0.93495 0.92659 0.85386 0.81217 0.81377 0.92083 0.89340 0.89794 0.92044 0.92965 0.91922 0.93162 0.83623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.83 10.38 113.37 1.18 2.01 16 2 O -0.32 -8.91 10.48 -90.01 -0.94 -9.85 16 3 C 0.29 9.36 7.49 84.80 0.63 10.00 16 4 C -0.18 -5.08 10.04 22.47 0.23 -4.86 16 5 C -0.03 -0.96 9.81 22.44 0.22 -0.74 16 6 C -0.16 -5.74 4.99 -19.77 -0.10 -5.84 16 7 C 0.13 4.94 2.86 29.88 0.09 5.03 16 8 H 0.05 1.80 8.03 -2.39 -0.02 1.78 16 9 C -0.13 -4.17 5.40 30.69 0.17 -4.00 16 10 C -0.11 -3.63 6.03 30.71 0.19 -3.44 16 11 C -0.14 -5.57 5.36 30.68 0.16 -5.41 16 12 C 0.22 11.16 2.50 29.88 0.07 11.24 16 13 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 14 C -0.55 -31.06 8.79 25.60 0.23 -30.83 16 15 H 0.06 3.50 7.74 -2.91 -0.02 3.48 16 16 C 0.03 1.57 5.40 84.66 0.46 2.02 16 17 N -0.90 -53.95 12.84 21.45 0.28 -53.67 16 18 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 20 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.85 16 22 O -0.38 -19.29 8.78 -148.98 -1.31 -20.60 16 23 C 0.15 5.76 10.52 84.63 0.89 6.65 16 24 N -0.56 -20.23 9.22 -308.95 -2.85 -23.08 16 25 H 0.05 1.15 8.10 -2.38 -0.02 1.13 16 26 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 27 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.17 3.48 8.06 -2.91 -0.02 3.45 16 29 H 0.17 3.76 8.06 -2.91 -0.02 3.73 16 30 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.15 5.99 7.78 -2.92 -0.02 5.97 16 Total: -1.00 -68.00 311.06 2.66 -65.35 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 1.04 Total: 13.71 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 4.41 Total: -18.18 kcal Atomic # 7 Polarization: -74.18 SS G_CDS: -2.57 Total: -76.75 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -2.25 Total: -30.45 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Total: -68.00 2.66 -65.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383653921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.612 kcal (2) G-P(sol) polarization free energy of solvation -68.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds