Wall clock time and date at job start Mon Mar 30 2020 07:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35680 * 116.99989 * 2 1 4 4 C 1.38918 * 119.68365 * 180.02562 * 3 2 1 5 5 C 1.38384 * 119.10873 * 179.76977 * 4 3 2 6 6 C 1.38827 * 118.48572 * 0.44541 * 5 4 3 7 7 C 1.50699 * 120.35561 * 179.80494 * 6 5 4 8 8 H 1.09003 * 109.48055 * 24.69639 * 7 6 5 9 9 C 1.53280 * 109.46549 * 264.71212 * 7 6 5 10 10 C 1.53179 * 109.06328 * 182.44103 * 9 7 6 11 11 C 1.53177 * 109.10692 * 56.94222 * 10 9 7 12 12 C 1.53091 * 109.16264 * 302.97408 * 11 10 9 13 13 H 1.09000 * 109.48169 * 177.60517 * 12 11 10 14 14 C 1.50703 * 109.48304 * 297.62472 * 12 11 10 15 15 H 1.07998 * 119.99908 * 0.02562 * 14 12 11 16 16 C 1.37872 * 120.00041 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99883 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99887 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47015 * 90.00284 * 18 16 14 20 20 H 1.48492 * 109.47022 * 209.99939 * 18 16 14 21 21 H 1.48496 * 109.47083 * 330.00075 * 18 16 14 22 22 O 1.42901 * 109.47945 * 144.72244 * 7 6 5 23 23 C 1.38044 * 119.28645 * 359.53222 * 6 5 4 24 24 N 1.31961 * 120.84050 * 0.24760 * 23 6 5 25 25 H 1.08998 * 109.46934 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47009 * 299.99598 * 1 2 3 27 27 H 1.08997 * 109.47286 * 59.99774 * 1 2 3 28 28 H 1.07998 * 120.44711 * 0.02562 * 4 3 2 29 29 H 1.08003 * 120.75257 * 180.24886 * 5 4 3 30 30 H 1.09006 * 109.64318 * 62.52583 * 9 7 6 31 31 H 1.09002 * 109.50809 * 302.27899 * 9 7 6 32 32 H 1.09002 * 109.54484 * 297.03018 * 10 9 7 33 33 H 1.08999 * 109.54222 * 176.85184 * 10 9 7 34 34 H 1.09004 * 109.52253 * 62.88396 * 11 10 9 35 35 H 1.09000 * 109.52322 * 183.06877 * 11 10 9 36 36 H 0.97002 * 119.99790 * 179.97438 * 17 16 14 37 37 H 1.08003 * 119.58383 * 180.27604 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0485 2.5132 -0.0054 6 6 3.2504 3.6492 -0.0001 7 6 3.8767 5.0199 -0.0006 8 1 4.8751 4.9632 -0.4344 9 6 3.9742 5.5375 1.4388 10 6 4.5552 6.9547 1.4226 11 6 3.6760 7.8470 0.5410 12 6 3.5908 7.2398 -0.8617 13 1 2.9320 7.8479 -1.4816 14 6 4.9659 7.2017 -1.4772 15 1 5.8158 7.5727 -0.9237 16 6 5.1391 6.6921 -2.7466 17 7 4.1043 6.2398 -3.4204 18 14 6.8437 6.6442 -3.5092 19 1 7.5011 5.3562 -3.1713 20 1 6.7297 6.7696 -4.9844 21 1 7.6554 7.7685 -2.9780 22 8 3.0710 5.9116 -0.7737 23 6 1.8771 3.5097 0.0000 24 7 1.3186 2.3141 0.0000 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 4.0229 0.3696 -0.0014 29 1 5.1254 2.5947 -0.0100 30 1 4.6246 4.8838 2.0201 31 1 2.9807 5.5562 1.8870 32 1 5.5679 6.9291 1.0203 33 1 4.5760 7.3519 2.4375 34 1 2.6765 7.9123 0.9710 35 1 4.1133 8.8436 0.4807 36 1 4.2261 5.8817 -4.3136 37 1 1.2517 4.3902 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000383653923.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:05 Heat of formation + Delta-G solvation = -57.019990 kcal Electronic energy + Delta-G solvation = -20225.069459 eV Core-core repulsion = 17160.516164 eV Total energy + Delta-G solvation = -3064.553295 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.31580 -38.46435 -37.29426 -32.96641 -32.43648 -32.16052 -31.22271 -28.81518 -27.03205 -25.62420 -23.83395 -22.95953 -22.29903 -21.00531 -19.02101 -18.12636 -16.86215 -16.20005 -15.78239 -15.56964 -14.70299 -14.32986 -14.22577 -13.95881 -13.72906 -13.52875 -13.16188 -12.99381 -12.65246 -12.38865 -11.84026 -11.79405 -11.37274 -11.14667 -10.94881 -10.92914 -10.63143 -10.45380 -10.23441 -9.90347 -9.76289 -9.47716 -9.18192 -8.75418 -8.49820 -8.10350 -7.71794 -6.02007 -4.17678 1.55488 1.65202 3.25018 3.31161 3.33719 3.35569 4.15143 4.37328 4.69762 4.90494 5.26620 5.30155 5.39639 5.40048 5.45823 5.51176 5.64369 5.70476 5.74749 5.83340 6.03057 6.06908 6.18707 6.33202 6.39129 6.45988 6.55242 6.75636 6.79910 6.91168 6.93199 7.01003 7.13399 7.49627 7.66031 7.83963 8.16452 8.23154 8.77926 9.02748 9.54894 11.02030 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.006217 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.245658 B = 4502.840813 C = 5105.349596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.315 6.315 3 C 0.300 3.700 4 C -0.194 4.194 5 C -0.039 4.039 6 C -0.139 4.139 7 C 0.150 3.850 8 H 0.074 0.926 9 C -0.137 4.137 10 C -0.108 4.108 11 C -0.142 4.142 12 C 0.213 3.787 13 H 0.062 0.938 14 C -0.559 4.559 15 H 0.057 0.943 16 C 0.080 3.920 17 N -0.857 5.857 18 Si 0.881 3.119 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 O -0.367 6.367 23 C 0.162 3.838 24 N -0.543 5.543 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.135 0.865 29 H 0.138 0.862 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.069 0.931 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.056 0.944 36 H 0.260 0.740 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.604 -7.542 8.053 11.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.223 6.223 3 C 0.122 3.878 4 C -0.214 4.214 5 C -0.065 4.065 6 C -0.142 4.142 7 C 0.091 3.909 8 H 0.091 0.909 9 C -0.174 4.174 10 C -0.146 4.146 11 C -0.180 4.180 12 C 0.157 3.843 13 H 0.080 0.920 14 C -0.597 4.597 15 H 0.076 0.924 16 C -0.126 4.126 17 N -0.492 5.492 18 Si 0.708 3.292 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.198 1.198 22 O -0.286 6.286 23 C 0.007 3.993 24 N -0.266 5.266 25 H 0.108 0.892 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.153 0.847 29 H 0.156 0.844 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.669 -8.020 7.788 11.766 hybrid contribution 1.874 0.210 -0.479 1.946 sum -1.795 -7.811 7.308 10.846 Atomic orbital electron populations 1.22765 0.77857 1.02250 1.02419 1.86182 1.22463 1.25124 1.88539 1.19787 0.89382 0.84662 0.93983 1.20903 0.91890 0.99084 1.09530 1.21254 1.00506 0.90699 0.94000 1.20841 0.94854 0.96273 1.02199 1.20244 0.95609 0.85022 0.90018 0.90862 1.22160 1.00391 0.97179 0.97719 1.21443 1.00556 0.94652 0.97944 1.22184 0.97722 0.98892 0.99215 1.19728 0.94920 0.80205 0.89444 0.91986 1.21527 0.94004 1.43625 1.00566 0.92441 1.25024 0.96199 0.94499 0.96884 1.70051 1.29189 1.38509 1.11493 0.86788 0.85199 0.78498 0.78677 1.20598 1.21137 1.19792 1.87907 1.48008 1.21972 1.70722 1.22296 0.92902 0.92909 0.91213 1.67335 1.40930 0.98873 1.19498 0.89181 0.92566 0.92426 0.84681 0.84372 0.92722 0.92603 0.91249 0.93986 0.93989 0.92505 0.93001 0.81913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.38 101.05 1.05 1.56 16 2 O -0.32 -4.81 10.48 -18.74 -0.20 -5.00 16 3 C 0.30 5.11 7.49 -17.12 -0.13 4.99 16 4 C -0.19 -3.05 10.04 -39.28 -0.39 -3.45 16 5 C -0.04 -0.65 9.83 -39.31 -0.39 -1.04 16 6 C -0.14 -2.64 5.02 -104.48 -0.52 -3.16 16 7 C 0.15 3.11 2.60 -27.74 -0.07 3.04 16 8 H 0.07 1.68 7.01 -51.93 -0.36 1.32 16 9 C -0.14 -2.42 5.42 -26.49 -0.14 -2.57 16 10 C -0.11 -1.97 5.77 -26.55 -0.15 -2.12 16 11 C -0.14 -2.84 5.59 -26.59 -0.15 -2.99 16 12 C 0.21 5.15 3.16 -27.83 -0.09 5.06 16 13 H 0.06 1.64 8.14 -51.93 -0.42 1.21 16 14 C -0.56 -14.50 6.59 -34.44 -0.23 -14.72 16 15 H 0.06 1.47 6.87 -52.49 -0.36 1.11 16 16 C 0.08 2.15 5.40 -17.82 -0.10 2.05 16 17 N -0.86 -24.39 12.84 55.43 0.71 -23.67 16 18 Si 0.88 20.57 29.54 -169.99 -5.02 15.55 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 O -0.37 -8.83 8.80 -35.23 -0.31 -9.14 16 23 C 0.16 3.04 10.51 -17.57 -0.18 2.86 16 24 N -0.54 -9.84 9.22 -13.33 -0.12 -9.96 16 25 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 27 H 0.06 0.72 8.10 -51.93 -0.42 0.29 16 28 H 0.14 1.77 8.06 -52.49 -0.42 1.34 16 29 H 0.14 2.01 8.06 -52.48 -0.42 1.58 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.33 6.85 -51.93 -0.36 0.98 16 33 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.16 3.03 7.63 -52.48 -0.40 2.63 16 LS Contribution 305.98 15.07 4.61 4.61 Total: -1.00 -29.18 305.98 -7.09 -36.27 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -5.26 Total: 1.84 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -1.50 Total: -10.50 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: 0.59 Total: -33.64 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.51 Total: -14.15 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.18 -7.09 -36.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383653923.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.748 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds