Wall clock time and date at job start Mon Mar 30 2020 07:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35680 * 116.99989 * 2 1 4 4 C 1.38918 * 119.68365 * 180.02562 * 3 2 1 5 5 C 1.38384 * 119.10873 * 179.76977 * 4 3 2 6 6 C 1.38827 * 118.48572 * 0.44541 * 5 4 3 7 7 C 1.50699 * 120.35561 * 179.80494 * 6 5 4 8 8 H 1.09003 * 109.48055 * 24.69639 * 7 6 5 9 9 C 1.53280 * 109.46549 * 264.71212 * 7 6 5 10 10 C 1.53179 * 109.06328 * 182.44103 * 9 7 6 11 11 C 1.53177 * 109.10692 * 56.94222 * 10 9 7 12 12 C 1.53091 * 109.16264 * 302.97408 * 11 10 9 13 13 H 1.09000 * 109.48169 * 177.60517 * 12 11 10 14 14 C 1.50703 * 109.48304 * 297.62472 * 12 11 10 15 15 H 1.07998 * 119.99908 * 0.02562 * 14 12 11 16 16 C 1.37872 * 120.00041 * 179.97438 * 14 12 11 17 17 N 1.31515 * 119.99883 * 0.02562 * 16 14 12 18 18 Si 1.86802 * 119.99887 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47015 * 90.00284 * 18 16 14 20 20 H 1.48492 * 109.47022 * 209.99939 * 18 16 14 21 21 H 1.48496 * 109.47083 * 330.00075 * 18 16 14 22 22 O 1.42901 * 109.47945 * 144.72244 * 7 6 5 23 23 C 1.38044 * 119.28645 * 359.53222 * 6 5 4 24 24 N 1.31961 * 120.84050 * 0.24760 * 23 6 5 25 25 H 1.08998 * 109.46934 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47009 * 299.99598 * 1 2 3 27 27 H 1.08997 * 109.47286 * 59.99774 * 1 2 3 28 28 H 1.07998 * 120.44711 * 0.02562 * 4 3 2 29 29 H 1.08003 * 120.75257 * 180.24886 * 5 4 3 30 30 H 1.09006 * 109.64318 * 62.52583 * 9 7 6 31 31 H 1.09002 * 109.50809 * 302.27899 * 9 7 6 32 32 H 1.09002 * 109.54484 * 297.03018 * 10 9 7 33 33 H 1.08999 * 109.54222 * 176.85184 * 10 9 7 34 34 H 1.09004 * 109.52253 * 62.88396 * 11 10 9 35 35 H 1.09000 * 109.52322 * 183.06877 * 11 10 9 36 36 H 0.97002 * 119.99790 * 179.97438 * 17 16 14 37 37 H 1.08003 * 119.58383 * 180.27604 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2740 -0.0005 5 6 4.0485 2.5132 -0.0054 6 6 3.2504 3.6492 -0.0001 7 6 3.8767 5.0199 -0.0006 8 1 4.8751 4.9632 -0.4344 9 6 3.9742 5.5375 1.4388 10 6 4.5552 6.9547 1.4226 11 6 3.6760 7.8470 0.5410 12 6 3.5908 7.2398 -0.8617 13 1 2.9320 7.8479 -1.4816 14 6 4.9659 7.2017 -1.4772 15 1 5.8158 7.5727 -0.9237 16 6 5.1391 6.6921 -2.7466 17 7 4.1043 6.2398 -3.4204 18 14 6.8437 6.6442 -3.5092 19 1 7.5011 5.3562 -3.1713 20 1 6.7297 6.7696 -4.9844 21 1 7.6554 7.7685 -2.9780 22 8 3.0710 5.9116 -0.7737 23 6 1.8771 3.5097 0.0000 24 7 1.3186 2.3141 0.0000 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 4.0229 0.3696 -0.0014 29 1 5.1254 2.5947 -0.0100 30 1 4.6246 4.8838 2.0201 31 1 2.9807 5.5562 1.8870 32 1 5.5679 6.9291 1.0203 33 1 4.5760 7.3519 2.4375 34 1 2.6765 7.9123 0.9710 35 1 4.1133 8.8436 0.4807 36 1 4.2261 5.8817 -4.3136 37 1 1.2517 4.3902 -0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000383653923.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:04 Heat of formation + Delta-G solvation = -75.709154 kcal Electronic energy + Delta-G solvation = -20225.879882 eV Core-core repulsion = 17160.516164 eV Total energy + Delta-G solvation = -3065.363718 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.64265 -40.01516 -38.64665 -34.76727 -34.05332 -33.73669 -32.72018 -30.31222 -28.20003 -27.44954 -25.37255 -24.26697 -23.96270 -22.48107 -20.72093 -19.36005 -18.48955 -17.79921 -17.14046 -16.95720 -16.60445 -15.90016 -15.61595 -15.40575 -15.24763 -14.95545 -14.63574 -14.51925 -14.09862 -13.81876 -13.55444 -12.99151 -12.92404 -12.78838 -12.64322 -12.43950 -12.22805 -12.09434 -11.75632 -11.53387 -11.40660 -10.86351 -10.70921 -10.60341 -10.35895 -9.72207 -9.23467 -8.06407 -6.27358 0.20692 0.30365 1.39679 1.42443 1.51257 2.15935 2.42117 2.77951 3.13870 3.38329 3.49584 3.98466 4.08978 4.21658 4.22673 4.29212 4.34547 4.44051 4.47807 4.55764 4.60840 4.71573 4.76642 4.84997 4.97019 5.02489 5.10328 5.24199 5.31699 5.38450 5.44701 5.48082 5.56111 5.73013 5.84236 6.19096 6.25072 6.79748 6.85853 7.17613 7.50150 8.97448 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.021612 B = 0.006217 C = 0.005483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.245658 B = 4502.840813 C = 5105.349596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.318 6.318 3 C 0.292 3.708 4 C -0.186 4.186 5 C -0.039 4.039 6 C -0.159 4.159 7 C 0.152 3.848 8 H 0.046 0.954 9 C -0.129 4.129 10 C -0.105 4.105 11 C -0.136 4.136 12 C 0.206 3.794 13 H 0.025 0.975 14 C -0.559 4.559 15 H 0.060 0.940 16 C 0.031 3.969 17 N -0.896 5.896 18 Si 0.942 3.058 19 H -0.274 1.274 20 H -0.289 1.289 21 H -0.264 1.264 22 O -0.389 6.389 23 C 0.149 3.851 24 N -0.554 5.554 25 H 0.127 0.873 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.167 0.833 29 H 0.159 0.841 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.257 0.743 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.494 -8.859 9.488 13.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.225 6.225 3 C 0.113 3.887 4 C -0.206 4.206 5 C -0.064 4.064 6 C -0.161 4.161 7 C 0.093 3.907 8 H 0.064 0.936 9 C -0.167 4.167 10 C -0.142 4.142 11 C -0.174 4.174 12 C 0.150 3.850 13 H 0.043 0.957 14 C -0.597 4.597 15 H 0.078 0.922 16 C -0.171 4.171 17 N -0.534 5.534 18 Si 0.767 3.233 19 H -0.200 1.200 20 H -0.215 1.215 21 H -0.189 1.189 22 O -0.309 6.309 23 C -0.005 4.005 24 N -0.277 5.277 25 H 0.145 0.855 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.185 0.815 29 H 0.177 0.823 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.066 0.934 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.553 -9.334 9.242 13.381 hybrid contribution 1.445 0.546 -0.911 1.794 sum -1.108 -8.788 8.331 12.160 Atomic orbital electron populations 1.23028 0.76164 1.04596 1.01958 1.86192 1.24143 1.24012 1.88181 1.20141 0.90195 0.84882 0.93469 1.21241 0.91695 0.99865 1.07768 1.21513 1.01468 0.90284 0.93133 1.20802 0.95161 0.96131 1.04003 1.20280 0.93759 0.85527 0.91131 0.93579 1.22104 1.01362 0.97318 0.95928 1.21429 0.99156 0.94526 0.99109 1.22065 0.99086 0.99188 0.97027 1.19630 0.93247 0.80587 0.91511 0.95698 1.21812 0.94785 1.42493 1.00585 0.92179 1.25744 0.99452 0.94376 0.97523 1.70200 1.31273 1.40212 1.11686 0.85824 0.81150 0.78834 0.77480 1.19951 1.21456 1.18853 1.87837 1.48773 1.22225 1.72054 1.22168 0.92954 0.93105 0.92298 1.67303 1.41396 0.98983 1.20059 0.85471 0.92595 0.93326 0.81527 0.82294 0.90223 0.91945 0.92476 0.90664 0.92837 0.92059 0.93424 0.82868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.82 10.38 113.37 1.18 2.00 16 2 O -0.32 -9.02 10.48 -89.98 -0.94 -9.97 16 3 C 0.29 9.50 7.49 84.79 0.63 10.14 16 4 C -0.19 -5.42 10.04 22.47 0.23 -5.20 16 5 C -0.04 -1.23 9.83 22.45 0.22 -1.00 16 6 C -0.16 -5.96 5.02 -19.77 -0.10 -6.06 16 7 C 0.15 6.29 2.60 29.94 0.08 6.36 16 8 H 0.05 2.14 7.01 -2.39 -0.02 2.12 16 9 C -0.13 -4.37 5.42 30.75 0.17 -4.20 16 10 C -0.10 -3.59 5.77 30.71 0.18 -3.41 16 11 C -0.14 -5.34 5.59 30.68 0.17 -5.17 16 12 C 0.21 10.25 3.16 29.88 0.09 10.34 16 13 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 14 C -0.56 -29.32 6.59 25.60 0.17 -29.15 16 15 H 0.06 3.06 6.87 -2.91 -0.02 3.04 16 16 C 0.03 1.70 5.40 84.65 0.46 2.16 16 17 N -0.90 -52.53 12.84 21.45 0.28 -52.26 16 18 Si 0.94 42.47 29.54 68.60 2.03 44.49 16 19 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 22 O -0.39 -19.26 8.80 -148.98 -1.31 -20.58 16 23 C 0.15 5.67 10.51 84.63 0.89 6.56 16 24 N -0.55 -19.86 9.22 -308.95 -2.85 -22.71 16 25 H 0.13 1.82 8.14 -2.39 -0.02 1.81 16 26 H 0.06 1.23 8.10 -2.38 -0.02 1.21 16 27 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 28 H 0.17 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.16 4.27 8.06 -2.91 -0.02 4.25 16 30 H 0.08 2.29 8.14 -2.38 -0.02 2.28 16 31 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 32 H 0.06 2.10 6.85 -2.39 -0.02 2.08 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 37 H 0.15 5.94 7.63 -2.91 -0.02 5.92 16 Total: -1.00 -63.64 305.98 2.62 -61.02 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 1.05 Total: 16.63 kcal Atomic # 6 Polarization: -21.00 SS G_CDS: 4.36 Total: -16.63 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -2.57 Total: -74.97 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -2.25 Total: -30.54 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -63.64 2.62 -61.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000383653923.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.685 kcal (2) G-P(sol) polarization free energy of solvation -63.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds