Wall clock time and date at job start Mon Mar 30 2020 07:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00221 * 2 1 4 4 H 1.48499 * 109.47371 * 270.00210 * 3 2 1 5 5 H 1.48507 * 109.47006 * 30.00456 * 3 2 1 6 6 H 1.48505 * 109.47104 * 149.99786 * 3 2 1 7 7 C 1.37877 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00056 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47221 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47077 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47293 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47709 * 174.71082 * 12 11 10 14 14 C 1.47919 * 110.99455 * 54.85339 * 13 12 11 15 15 C 1.54591 * 102.62073 * 149.20221 * 14 13 12 16 16 C 1.51587 * 102.85144 * 334.50071 * 15 14 13 17 17 C 1.37935 * 131.52996 * 196.11213 * 16 15 14 18 18 C 1.38257 * 120.11170 * 179.04845 * 17 16 15 19 19 C 1.38539 * 119.86155 * 0.57202 * 18 17 16 20 20 F 1.35095 * 119.89731 * 179.86748 * 19 18 17 21 21 C 1.38126 * 120.20599 * 359.58670 * 19 18 17 22 22 C 1.38993 * 107.94877 * 15.77316 * 16 15 14 23 23 H 0.96998 * 119.99896 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47287 * 59.99690 * 9 7 2 25 25 H 1.09002 * 109.46722 * 299.99423 * 9 7 2 26 26 H 1.09004 * 109.46966 * 60.00222 * 10 9 7 27 27 H 1.08995 * 109.47298 * 300.00067 * 10 9 7 28 28 H 1.08998 * 109.46931 * 60.00214 * 11 10 9 29 29 H 1.08995 * 109.47540 * 300.00444 * 11 10 9 30 30 H 1.09005 * 109.46996 * 54.71124 * 12 11 10 31 31 H 1.09007 * 109.47394 * 294.71332 * 12 11 10 32 32 H 1.08999 * 110.77816 * 30.91602 * 14 13 12 33 33 H 1.09004 * 110.93832 * 267.55697 * 14 13 12 34 34 H 1.09003 * 110.73875 * 216.16266 * 15 14 13 35 35 H 1.09007 * 110.74116 * 92.83897 * 15 14 13 36 36 H 1.07998 * 119.94356 * 359.32449 * 17 16 15 37 37 H 1.08005 * 120.06960 * 180.30151 * 18 17 16 38 38 H 1.08004 * 119.91098 * 180.27528 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4743 -6.1500 0.0005 13 7 1.7444 -7.4184 0.1288 14 6 0.7135 -7.5455 -0.9243 15 6 0.6499 -9.0733 -1.1521 16 6 2.0269 -9.5363 -0.7192 17 6 2.7063 -10.7162 -0.9402 18 6 3.9851 -10.8840 -0.4421 19 6 4.5789 -9.8687 0.2899 20 9 5.8274 -10.0329 0.7792 21 6 3.9007 -8.6869 0.5162 22 6 2.6128 -8.5110 0.0138 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 0.8533 -5.0451 -0.8886 29 1 0.8538 -5.0446 0.8913 30 1 3.1623 -6.0404 0.8389 31 1 3.0363 -6.1471 -0.9335 32 1 1.0245 -7.0315 -1.8338 33 1 -0.2473 -7.1660 -0.5767 34 1 0.4797 -9.2998 -2.2046 35 1 -0.1225 -9.5246 -0.5292 36 1 2.2403 -11.5086 -1.5070 37 1 4.5184 -11.8063 -0.6197 38 1 4.3699 -7.8969 1.0838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385188100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:27 Heat of formation + Delta-G solvation = -30.840959 kcal Electronic energy + Delta-G solvation = -18813.193128 eV Core-core repulsion = 15762.147830 eV Total energy + Delta-G solvation = -3051.045298 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.03568 -40.88067 -37.04585 -34.78648 -33.02360 -31.99816 -30.16174 -28.71609 -27.82699 -24.76150 -23.35298 -22.49185 -21.63622 -20.58116 -19.92187 -17.51002 -16.87452 -16.25864 -16.06255 -15.83383 -15.59029 -14.97511 -14.88126 -14.45456 -14.16432 -13.79568 -13.11219 -12.99360 -12.67284 -12.38641 -12.25989 -11.81958 -11.73783 -11.57033 -11.54028 -11.18458 -11.03357 -10.70646 -10.53181 -10.47190 -9.98092 -9.68446 -9.31104 -9.05033 -8.91607 -8.35005 -7.90580 -6.00115 -4.02437 0.97361 1.06138 3.25390 3.31636 3.37878 3.41457 3.55878 4.21425 4.28390 4.45975 4.46243 4.72883 4.87780 4.93839 5.01354 5.19554 5.27242 5.35721 5.36888 5.51035 5.56104 5.70772 5.72422 5.77360 5.88212 5.99738 6.02196 6.11561 6.23229 6.36327 6.52760 6.69373 6.82777 6.87871 7.00400 7.14765 7.67485 7.82176 8.00198 8.43001 9.04848 9.61698 11.11246 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.032411 B = 0.003291 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.704957 B = 8506.718551 C = 9245.433459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.022 3.978 10 C -0.109 4.109 11 C -0.118 4.118 12 C 0.048 3.952 13 N -0.474 5.474 14 C 0.046 3.954 15 C -0.083 4.083 16 C -0.157 4.157 17 C -0.052 4.052 18 C -0.186 4.186 19 C 0.125 3.875 20 F -0.139 7.139 21 C -0.179 4.179 22 C 0.135 3.865 23 H 0.260 0.740 24 H 0.015 0.985 25 H 0.016 0.984 26 H 0.049 0.951 27 H 0.046 0.954 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.812 -22.340 -2.627 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.156 4.156 12 C -0.077 4.077 13 N -0.186 5.186 14 C -0.080 4.080 15 C -0.120 4.120 16 C -0.160 4.160 17 C -0.071 4.071 18 C -0.206 4.206 19 C 0.105 3.895 20 F -0.118 7.118 21 C -0.201 4.201 22 C 0.035 3.965 23 H 0.070 0.930 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.148 0.852 37 H 0.153 0.847 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.407 -22.102 -2.103 22.462 hybrid contribution 1.017 0.988 -0.422 1.479 sum 4.424 -21.114 -2.525 21.720 Atomic orbital electron populations 1.69963 1.06055 1.26573 1.50954 1.25029 0.94852 0.99259 0.95359 0.86605 0.79878 0.83500 0.78088 1.20681 1.21212 1.19870 1.21279 0.93039 0.91174 1.50458 0.92740 1.19083 0.93968 0.91288 0.97177 1.21600 0.99158 0.93643 1.00316 1.21757 0.97807 0.93723 1.02345 1.22535 0.96753 0.87097 1.01346 1.60530 1.11675 1.01999 1.44392 1.23300 0.96212 0.95604 0.92840 1.21320 0.93724 0.94889 1.02053 1.20615 0.97575 0.95562 1.02263 1.20166 0.93047 0.95920 0.97944 1.20912 0.96854 0.99582 1.03230 1.17265 0.80284 0.94740 0.97214 1.91498 1.38484 1.95819 1.85984 1.20327 0.94251 0.98432 1.07070 1.19447 0.90549 0.93155 0.93325 0.93020 0.96712 0.96569 0.93257 0.93478 0.92221 0.91339 0.90102 0.93580 0.91533 0.88125 0.89889 0.89350 0.85160 0.84736 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.85 9.11 -34.44 -0.31 -15.17 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 10 C -0.11 -2.20 5.15 -26.73 -0.14 -2.33 16 11 C -0.12 -1.94 4.89 -26.74 -0.13 -2.07 16 12 C 0.05 0.67 4.54 -3.83 -0.02 0.65 16 13 N -0.47 -6.22 5.14 -169.02 -0.87 -7.09 16 14 C 0.05 0.50 5.53 -2.43 -0.01 0.49 16 15 C -0.08 -0.75 7.03 -26.61 -0.19 -0.94 16 16 C -0.16 -1.70 6.23 -104.02 -0.65 -2.35 16 17 C -0.05 -0.48 10.03 -39.69 -0.40 -0.88 16 18 C -0.19 -1.82 10.04 -39.46 -0.40 -2.22 16 19 C 0.12 1.46 7.28 -39.51 -0.29 1.17 16 20 F -0.14 -1.69 17.26 2.25 0.04 -1.66 16 21 C -0.18 -2.22 9.52 -39.20 -0.37 -2.59 16 22 C 0.14 1.71 5.94 -83.41 -0.50 1.22 16 23 H 0.26 7.39 8.31 -40.82 -0.34 7.06 16 24 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.06 0.95 7.07 -51.93 -0.37 0.58 16 29 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 30 H 0.08 1.13 7.56 -51.93 -0.39 0.73 16 31 H 0.05 0.64 8.11 -51.92 -0.42 0.22 16 32 H 0.07 0.72 7.57 -51.93 -0.39 0.33 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.13 1.61 7.52 -52.48 -0.39 1.22 16 LS Contribution 317.41 15.07 4.78 4.78 Total: -1.00 -30.73 317.41 -9.70 -40.43 By element: Atomic # 1 Polarization: 1.92 SS G_CDS: -5.74 Total: -3.82 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -3.63 Total: -23.07 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: -0.13 Total: -33.39 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.73 -9.70 -40.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385188100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.591 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds