Wall clock time and date at job start Mon Mar 30 2020 07:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00221 * 2 1 4 4 H 1.48499 * 109.47371 * 270.00210 * 3 2 1 5 5 H 1.48507 * 109.47006 * 30.00456 * 3 2 1 6 6 H 1.48505 * 109.47104 * 149.99786 * 3 2 1 7 7 C 1.37877 * 119.99750 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00056 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00256 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47221 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47077 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47293 * 179.97438 * 11 10 9 13 13 N 1.46902 * 109.47709 * 174.71082 * 12 11 10 14 14 C 1.47919 * 110.99455 * 54.85339 * 13 12 11 15 15 C 1.54591 * 102.62073 * 149.20221 * 14 13 12 16 16 C 1.51587 * 102.85144 * 334.50071 * 15 14 13 17 17 C 1.37935 * 131.52996 * 196.11213 * 16 15 14 18 18 C 1.38257 * 120.11170 * 179.04845 * 17 16 15 19 19 C 1.38539 * 119.86155 * 0.57202 * 18 17 16 20 20 F 1.35095 * 119.89731 * 179.86748 * 19 18 17 21 21 C 1.38126 * 120.20599 * 359.58670 * 19 18 17 22 22 C 1.38993 * 107.94877 * 15.77316 * 16 15 14 23 23 H 0.96998 * 119.99896 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47287 * 59.99690 * 9 7 2 25 25 H 1.09002 * 109.46722 * 299.99423 * 9 7 2 26 26 H 1.09004 * 109.46966 * 60.00222 * 10 9 7 27 27 H 1.08995 * 109.47298 * 300.00067 * 10 9 7 28 28 H 1.08998 * 109.46931 * 60.00214 * 11 10 9 29 29 H 1.08995 * 109.47540 * 300.00444 * 11 10 9 30 30 H 1.09005 * 109.46996 * 54.71124 * 12 11 10 31 31 H 1.09007 * 109.47394 * 294.71332 * 12 11 10 32 32 H 1.08999 * 110.77816 * 30.91602 * 14 13 12 33 33 H 1.09004 * 110.93832 * 267.55697 * 14 13 12 34 34 H 1.09003 * 110.73875 * 216.16266 * 15 14 13 35 35 H 1.09007 * 110.74116 * 92.83897 * 15 14 13 36 36 H 1.07998 * 119.94356 * 359.32449 * 17 16 15 37 37 H 1.08005 * 120.06960 * 180.30151 * 18 17 16 38 38 H 1.08004 * 119.91098 * 180.27528 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 6 2.4743 -6.1500 0.0005 13 7 1.7444 -7.4184 0.1288 14 6 0.7135 -7.5455 -0.9243 15 6 0.6499 -9.0733 -1.1521 16 6 2.0269 -9.5363 -0.7192 17 6 2.7063 -10.7162 -0.9402 18 6 3.9851 -10.8840 -0.4421 19 6 4.5789 -9.8687 0.2899 20 9 5.8274 -10.0329 0.7792 21 6 3.9007 -8.6869 0.5162 22 6 2.6128 -8.5110 0.0138 23 1 -0.4850 0.8400 0.0004 24 1 0.6246 -2.5571 -0.8896 25 1 0.6240 -2.5567 0.8904 26 1 2.8718 -3.6044 0.8906 27 1 2.8719 -3.6044 -0.8894 28 1 0.8533 -5.0451 -0.8886 29 1 0.8538 -5.0446 0.8913 30 1 3.1623 -6.0404 0.8389 31 1 3.0363 -6.1471 -0.9335 32 1 1.0245 -7.0315 -1.8338 33 1 -0.2473 -7.1660 -0.5767 34 1 0.4797 -9.2998 -2.2046 35 1 -0.1225 -9.5246 -0.5292 36 1 2.2403 -11.5086 -1.5070 37 1 4.5184 -11.8063 -0.6197 38 1 4.3699 -7.8969 1.0838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385188100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:26 Heat of formation + Delta-G solvation = -47.239502 kcal Electronic energy + Delta-G solvation = -18813.904222 eV Core-core repulsion = 15762.147830 eV Total energy + Delta-G solvation = -3051.756392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.93120 -41.74926 -38.02688 -36.35648 -34.63623 -33.29490 -31.38963 -29.56284 -29.27733 -26.44310 -24.17510 -23.89188 -22.52961 -22.00197 -21.24128 -18.47804 -18.35289 -17.75740 -17.04805 -16.68251 -16.56576 -16.51811 -16.05943 -15.86440 -15.17193 -14.60546 -14.52569 -14.35266 -14.04621 -13.54601 -13.47294 -13.17997 -12.92438 -12.91389 -12.63005 -12.50019 -12.36761 -12.21739 -12.06584 -11.98698 -11.45095 -11.34192 -11.10694 -10.81687 -10.56103 -9.75286 -8.79251 -8.21008 -6.32189 0.13838 0.23549 1.39157 1.40486 1.51685 2.38344 2.41776 2.69266 3.11982 3.34489 3.49108 3.65662 3.90174 3.99427 4.01864 4.13005 4.19106 4.28929 4.41335 4.45061 4.53624 4.69912 4.78956 4.83381 4.89849 4.98226 5.01385 5.11285 5.15221 5.21456 5.24135 5.28221 5.40842 5.52369 5.66063 5.75194 5.85446 5.89191 6.11302 6.24891 6.85089 7.37165 8.90796 Molecular weight = 263.14amu Principal moments of inertia in cm(-1) A = 0.032411 B = 0.003291 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 863.704957 B = 8506.718551 C = 9245.433459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.059 0.941 9 C 0.025 3.975 10 C -0.097 4.097 11 C -0.105 4.105 12 C 0.059 3.941 13 N -0.486 5.486 14 C 0.038 3.962 15 C -0.075 4.075 16 C -0.159 4.159 17 C -0.047 4.047 18 C -0.178 4.178 19 C 0.106 3.894 20 F -0.147 7.147 21 C -0.194 4.194 22 C 0.109 3.891 23 H 0.264 0.736 24 H -0.007 1.007 25 H -0.010 1.010 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.166 0.834 37 H 0.160 0.840 38 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.336 -23.735 -3.549 24.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.199 4.199 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.136 4.136 11 C -0.143 4.143 12 C -0.066 4.066 13 N -0.199 5.199 14 C -0.087 4.087 15 C -0.112 4.112 16 C -0.162 4.162 17 C -0.065 4.065 18 C -0.197 4.197 19 C 0.086 3.914 20 F -0.125 7.125 21 C -0.216 4.216 22 C 0.010 3.990 23 H 0.073 0.927 24 H 0.011 0.989 25 H 0.009 0.991 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.120 0.880 34 H 0.125 0.875 35 H 0.118 0.882 36 H 0.184 0.816 37 H 0.178 0.822 38 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.941 -23.519 -3.025 24.038 hybrid contribution 0.832 1.365 -0.140 1.605 sum 4.773 -22.154 -3.166 22.883 Atomic orbital electron populations 1.70092 1.07772 1.27780 1.51687 1.25988 0.95797 1.03375 0.94727 0.85457 0.78655 0.78450 0.78553 1.19654 1.20675 1.18840 1.21742 0.93548 0.92591 1.50537 0.92319 1.18999 0.94422 0.93026 0.94799 1.21400 0.98075 0.93540 1.00546 1.21538 0.97797 0.92772 1.02168 1.22277 0.95920 0.87092 1.01334 1.60531 1.12124 1.01508 1.45701 1.23423 0.95620 0.97420 0.92248 1.21352 0.93020 0.93070 1.03712 1.20953 0.98228 0.95577 1.01426 1.20561 0.92564 0.96102 0.97271 1.21272 0.97090 0.99718 1.01629 1.17489 0.80270 0.95314 0.98280 1.91475 1.38950 1.95863 1.86254 1.20400 0.94717 0.98886 1.07595 1.19580 0.90898 0.93698 0.94820 0.92743 0.98879 0.99141 0.93182 0.92975 0.91748 0.92186 0.90435 0.93387 0.91681 0.87982 0.87514 0.88237 0.81637 0.82238 0.85479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 3 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -31.56 9.11 25.60 0.23 -31.33 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.02 1.31 4.97 29.85 0.15 1.46 16 10 C -0.10 -3.99 5.15 30.60 0.16 -3.83 16 11 C -0.10 -3.47 4.89 30.59 0.15 -3.32 16 12 C 0.06 1.67 4.54 86.30 0.39 2.06 16 13 N -0.49 -12.52 5.14 -688.64 -3.54 -16.06 16 14 C 0.04 0.79 5.53 86.65 0.48 1.27 16 15 C -0.07 -1.16 7.03 30.67 0.22 -0.94 16 16 C -0.16 -3.07 6.23 -19.47 -0.12 -3.19 16 17 C -0.05 -0.71 10.03 22.20 0.22 -0.49 16 18 C -0.18 -3.02 10.04 22.35 0.22 -2.80 16 19 C 0.11 2.39 7.28 22.32 0.16 2.55 16 20 F -0.15 -3.51 17.26 44.97 0.78 -2.73 16 21 C -0.19 -4.81 9.52 22.51 0.21 -4.60 16 22 C 0.11 2.68 5.94 38.28 0.23 2.91 16 23 H 0.26 15.16 8.31 -92.71 -0.77 14.38 16 24 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 25 H -0.01 -0.57 8.14 -2.39 -0.02 -0.58 16 26 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 27 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 28 H 0.06 2.05 7.07 -2.39 -0.02 2.04 16 29 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.08 2.19 7.56 -2.38 -0.02 2.18 16 31 H 0.05 1.31 8.11 -2.38 -0.02 1.29 16 32 H 0.06 1.35 7.57 -2.39 -0.02 1.33 16 33 H 0.10 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.17 1.34 8.06 -2.91 -0.02 1.32 16 37 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 38 H 0.13 3.18 7.52 -2.91 -0.02 3.16 16 Total: -1.00 -66.71 317.41 3.75 -62.96 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 1.03 Total: 6.00 kcal Atomic # 6 Polarization: -43.01 SS G_CDS: 3.17 Total: -39.84 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -3.25 Total: -73.03 kcal Atomic # 9 Polarization: -3.51 SS G_CDS: 0.78 Total: -2.73 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -66.71 3.75 -62.96 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385188100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.719 kcal (2) G-P(sol) polarization free energy of solvation -66.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds