Wall clock time and date at job start Mon Mar 30 2020 06:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50704 * 119.99821 * 2 1 4 4 O 1.42897 * 109.47042 * 134.99855 * 3 2 1 5 5 N 1.46305 * 113.99943 * 179.97438 * 4 3 2 6 6 C 1.46895 * 110.99741 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47520 * 329.99736 * 6 5 4 8 8 C 1.53005 * 109.47622 * 90.00049 * 6 5 4 9 9 C 1.50710 * 109.46945 * 210.00006 * 6 5 4 10 10 C 1.38300 * 119.92572 * 319.72731 * 9 6 5 11 11 C 1.38103 * 120.06750 * 179.72315 * 10 9 6 12 12 C 1.38885 * 119.92822 * 0.55030 * 11 10 9 13 13 O 1.35747 * 120.06692 * 179.74726 * 12 11 10 14 14 C 1.34834 * 116.99544 * 174.43951 * 13 12 11 15 15 H 1.07997 * 120.00212 * 5.05887 * 14 13 12 16 16 C 1.38650 * 119.99650 * 185.05387 * 14 13 12 17 17 N 1.31555 * 120.00260 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99815 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47102 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47162 * 120.00191 * 18 16 14 21 21 H 1.48506 * 109.46972 * 240.00064 * 18 16 14 22 22 C 1.38875 * 119.86050 * 359.72182 * 12 11 10 23 23 C 1.38104 * 119.93398 * 0.02562 * 22 12 11 24 24 H 1.07995 * 119.99397 * 180.02562 * 1 2 3 25 25 H 1.07996 * 119.99672 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00005 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47336 * 14.99515 * 3 2 1 28 28 H 1.08996 * 109.46770 * 254.99399 * 3 2 1 29 29 H 1.00895 * 110.99593 * 56.04347 * 5 4 3 30 30 H 1.08991 * 109.47075 * 179.97438 * 8 6 5 31 31 H 1.08993 * 109.46873 * 299.99973 * 8 6 5 32 32 H 1.09001 * 109.46928 * 59.99325 * 8 6 5 33 33 H 1.08000 * 119.96967 * 359.97438 * 10 9 6 34 34 H 1.07996 * 120.03601 * 180.26770 * 11 10 9 35 35 H 0.97007 * 120.00340 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.03532 * 179.97438 * 22 12 11 37 37 H 1.07996 * 119.96593 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 7 3.9270 2.4634 1.0339 6 6 4.9982 2.3258 2.0297 7 1 4.6764 1.6454 2.8180 8 6 6.2531 1.7678 1.3552 9 6 5.3063 3.6753 2.6257 10 6 5.3353 4.7966 1.8167 11 6 5.6117 6.0355 2.3608 12 6 5.8719 6.1529 3.7200 13 8 6.1489 7.3686 4.2568 14 6 6.2780 7.4305 5.5975 15 1 6.2425 6.5255 6.1858 16 6 6.4564 8.6560 6.2209 17 7 6.5002 9.7584 5.5042 18 14 6.6359 8.7418 8.0783 19 1 6.5526 7.3728 8.6474 20 1 7.9502 9.3418 8.4214 21 1 5.5470 9.5791 8.6427 22 6 5.8475 5.0242 4.5287 23 6 5.5653 3.7889 3.9795 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5399 0.9353 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3855 2.1162 0.2659 28 1 2.4756 1.4867 -0.9926 29 1 3.3460 3.2633 1.2355 30 1 7.0479 1.6662 2.0939 31 1 6.0302 0.7918 0.9241 32 1 6.5749 2.4482 0.5668 33 1 5.1377 4.7039 0.7589 34 1 5.6300 6.9114 1.7292 35 1 6.6247 10.6159 5.9404 36 1 6.0498 5.1122 5.5859 37 1 5.5458 2.9109 4.6080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000387190342.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:15 Heat of formation + Delta-G solvation = 16.031462 kcal Electronic energy + Delta-G solvation = -18721.217333 eV Core-core repulsion = 15659.831787 eV Total energy + Delta-G solvation = -3061.385546 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.26266 -37.66235 -36.75054 -34.59662 -33.14011 -32.21497 -30.29988 -28.57276 -27.96344 -25.63982 -25.42044 -22.48059 -21.94690 -20.37282 -19.82456 -18.03465 -17.31612 -16.95210 -15.93449 -15.70128 -14.86984 -14.60200 -14.36701 -13.95354 -13.74080 -13.66921 -13.54262 -12.97535 -12.81965 -12.57589 -12.35875 -11.87060 -11.75052 -11.71178 -11.28752 -11.25859 -10.85890 -10.76744 -10.57193 -10.45910 -10.41228 -9.67081 -9.39927 -8.88926 -8.61195 -8.25822 -7.27162 -6.50760 -4.09705 1.84538 2.14265 2.17973 2.86935 3.09054 3.10626 3.16164 3.92061 4.46957 4.68769 4.88833 4.90760 5.03483 5.20587 5.27788 5.30989 5.41361 5.47253 5.58969 5.63514 5.65838 5.77197 5.96833 6.07652 6.16536 6.27781 6.29801 6.40532 6.42361 6.62911 6.68710 6.83740 6.98631 7.16337 7.29456 7.34707 7.38488 7.73851 7.94120 8.94852 9.63774 10.67055 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033760 B = 0.003327 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.192500 B = 8413.064314 C = 8557.817204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.087 3.913 4 O -0.257 6.257 5 N -0.499 5.499 6 C 0.135 3.865 7 H 0.063 0.937 8 C -0.127 4.127 9 C -0.201 4.201 10 C -0.060 4.060 11 C -0.193 4.193 12 C 0.157 3.843 13 O -0.175 6.175 14 C -0.393 4.393 15 H 0.093 0.907 16 C 0.040 3.960 17 N -0.861 5.861 18 Si 0.942 3.058 19 H -0.266 1.266 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.233 4.233 23 C -0.058 4.058 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.116 0.884 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.339 0.661 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.060 0.940 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.270 0.730 36 H 0.128 0.872 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.604 -14.629 -7.413 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.166 4.166 3 C 0.010 3.990 4 O -0.264 6.264 5 N -0.171 5.171 6 C 0.026 3.974 7 H 0.081 0.919 8 C -0.185 4.185 9 C -0.202 4.202 10 C -0.079 4.079 11 C -0.212 4.212 12 C 0.103 3.897 13 O -0.078 6.078 14 C -0.469 4.469 15 H 0.111 0.889 16 C -0.165 4.165 17 N -0.495 5.495 18 Si 0.766 3.234 19 H -0.191 1.191 20 H -0.201 1.201 21 H -0.201 1.201 22 C -0.253 4.253 23 C -0.077 4.077 24 H 0.122 0.878 25 H 0.116 0.884 26 H 0.134 0.866 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.155 0.845 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.080 0.920 36 H 0.146 0.854 37 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.090 -14.500 -7.878 17.590 hybrid contribution -0.510 0.326 1.731 1.834 sum -6.600 -14.174 -6.147 16.800 Atomic orbital electron populations 1.23840 0.95541 1.02263 1.00381 1.22757 0.95584 0.98199 1.00067 1.21408 0.88556 0.95240 0.93842 1.90776 1.45951 1.28626 1.61065 1.66910 1.06252 0.94195 1.49744 1.20315 0.90531 0.94621 0.91963 0.91857 1.21707 0.95712 1.00472 1.00600 1.19200 1.13568 0.93419 0.94047 1.20489 0.97690 0.91252 0.98468 1.20231 1.10097 0.97760 0.93106 1.19430 0.91496 0.86249 0.92530 1.83982 1.75503 1.24436 1.23902 1.21391 1.51663 0.94840 0.78994 0.88947 1.25308 0.96516 0.94111 1.00560 1.70046 1.45326 0.98145 1.36008 0.85637 0.78339 0.78900 0.80508 1.19068 1.20075 1.20092 1.21137 1.10934 0.92294 1.00902 1.20582 0.97096 0.96474 0.93567 0.87839 0.88367 0.86639 0.93035 0.91610 0.84453 0.92242 0.92773 0.92091 0.86428 0.86365 0.91976 0.85412 0.87480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 14.31 29.01 0.42 -1.02 16 2 C -0.15 -1.37 9.89 -36.03 -0.36 -1.72 16 3 C 0.09 0.93 6.80 36.01 0.24 1.18 16 4 O -0.26 -3.54 11.21 -13.93 -0.16 -3.69 16 5 N -0.50 -6.88 6.59 -5.65 -0.04 -6.92 16 6 C 0.13 1.95 3.16 -68.86 -0.22 1.74 16 7 H 0.06 0.94 7.91 -51.93 -0.41 0.53 16 8 C -0.13 -1.69 9.50 37.16 0.35 -1.33 16 9 C -0.20 -3.35 4.72 -104.57 -0.49 -3.84 16 10 C -0.06 -1.05 8.90 -39.61 -0.35 -1.40 16 11 C -0.19 -3.96 9.99 -39.39 -0.39 -4.36 16 12 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 13 O -0.18 -4.93 9.76 0.05 0.00 -4.93 16 14 C -0.39 -10.83 9.49 30.88 0.29 -10.53 16 15 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 16 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 17 N -0.86 -24.97 13.67 55.48 0.76 -24.21 16 18 Si 0.94 20.27 29.55 -169.99 -5.02 15.24 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 21 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 22 C -0.23 -4.96 9.17 -39.39 -0.36 -5.32 16 23 C -0.06 -1.05 9.66 -39.61 -0.38 -1.43 16 24 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 25 H 0.10 0.71 7.90 -52.49 -0.41 0.29 16 26 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 27 H 0.05 0.52 7.86 -51.93 -0.41 0.11 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.34 4.55 7.97 -39.29 -0.31 4.24 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.12 1.77 7.71 -52.49 -0.40 1.37 16 34 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 35 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 37 H 0.11 1.66 8.03 -52.49 -0.42 1.24 16 LS Contribution 323.10 15.07 4.87 4.87 Total: -1.00 -29.80 323.10 -6.23 -36.04 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.04 Total: 7.21 kcal Atomic # 6 Polarization: -22.00 SS G_CDS: -1.61 Total: -23.61 kcal Atomic # 7 Polarization: -31.85 SS G_CDS: 0.72 Total: -31.13 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.16 Total: -8.62 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.80 -6.23 -36.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387190342.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.067 kcal (2) G-P(sol) polarization free energy of solvation -29.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds