Wall clock time and date at job start Mon Mar 30 2020 06:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50704 * 119.99821 * 2 1 4 4 O 1.42897 * 109.47042 * 134.99855 * 3 2 1 5 5 N 1.46305 * 113.99943 * 179.97438 * 4 3 2 6 6 C 1.46895 * 110.99741 * 180.02562 * 5 4 3 7 7 H 1.09001 * 109.47520 * 329.99736 * 6 5 4 8 8 C 1.53005 * 109.47622 * 90.00049 * 6 5 4 9 9 C 1.50710 * 109.46945 * 210.00006 * 6 5 4 10 10 C 1.38300 * 119.92572 * 319.72731 * 9 6 5 11 11 C 1.38103 * 120.06750 * 179.72315 * 10 9 6 12 12 C 1.38885 * 119.92822 * 0.55030 * 11 10 9 13 13 O 1.35747 * 120.06692 * 179.74726 * 12 11 10 14 14 C 1.34834 * 116.99544 * 174.43951 * 13 12 11 15 15 H 1.07997 * 120.00212 * 5.05887 * 14 13 12 16 16 C 1.38650 * 119.99650 * 185.05387 * 14 13 12 17 17 N 1.31555 * 120.00260 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99815 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47102 * 359.97438 * 18 16 14 20 20 H 1.48492 * 109.47162 * 120.00191 * 18 16 14 21 21 H 1.48506 * 109.46972 * 240.00064 * 18 16 14 22 22 C 1.38875 * 119.86050 * 359.72182 * 12 11 10 23 23 C 1.38104 * 119.93398 * 0.02562 * 22 12 11 24 24 H 1.07995 * 119.99397 * 180.02562 * 1 2 3 25 25 H 1.07996 * 119.99672 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.00005 * 179.97438 * 2 1 3 27 27 H 1.09000 * 109.47336 * 14.99515 * 3 2 1 28 28 H 1.08996 * 109.46770 * 254.99399 * 3 2 1 29 29 H 1.00895 * 110.99593 * 56.04347 * 5 4 3 30 30 H 1.08991 * 109.47075 * 179.97438 * 8 6 5 31 31 H 1.08993 * 109.46873 * 299.99973 * 8 6 5 32 32 H 1.09001 * 109.46928 * 59.99325 * 8 6 5 33 33 H 1.08000 * 119.96967 * 359.97438 * 10 9 6 34 34 H 1.07996 * 120.03601 * 180.26770 * 11 10 9 35 35 H 0.97007 * 120.00340 * 179.97438 * 17 16 14 36 36 H 1.07996 * 120.03532 * 179.97438 * 22 12 11 37 37 H 1.07996 * 119.96593 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1267 1.2414 0.9527 5 7 3.9270 2.4634 1.0339 6 6 4.9982 2.3258 2.0297 7 1 4.6764 1.6454 2.8180 8 6 6.2531 1.7678 1.3552 9 6 5.3063 3.6753 2.6257 10 6 5.3353 4.7966 1.8167 11 6 5.6117 6.0355 2.3608 12 6 5.8719 6.1529 3.7200 13 8 6.1489 7.3686 4.2568 14 6 6.2780 7.4305 5.5975 15 1 6.2425 6.5255 6.1858 16 6 6.4564 8.6560 6.2209 17 7 6.5002 9.7584 5.5042 18 14 6.6359 8.7418 8.0783 19 1 6.5526 7.3728 8.6474 20 1 7.9502 9.3418 8.4214 21 1 5.5470 9.5791 8.6427 22 6 5.8475 5.0242 4.5287 23 6 5.5653 3.7889 3.9795 24 1 -0.5399 -0.9353 0.0004 25 1 -0.5399 0.9353 -0.0004 26 1 1.8501 -0.9353 0.0004 27 1 1.3855 2.1162 0.2659 28 1 2.4756 1.4867 -0.9926 29 1 3.3460 3.2633 1.2355 30 1 7.0479 1.6662 2.0939 31 1 6.0302 0.7918 0.9241 32 1 6.5749 2.4482 0.5668 33 1 5.1377 4.7039 0.7589 34 1 5.6300 6.9114 1.7292 35 1 6.6247 10.6159 5.9404 36 1 6.0498 5.1122 5.5859 37 1 5.5458 2.9109 4.6080 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000387190342.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:15 Heat of formation + Delta-G solvation = -2.029696 kcal Electronic energy + Delta-G solvation = -18722.000524 eV Core-core repulsion = 15659.831787 eV Total energy + Delta-G solvation = -3062.168737 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92006 -39.08345 -37.97229 -35.75574 -34.36739 -33.89250 -31.88823 -29.89515 -29.23264 -27.38542 -26.45067 -23.97114 -23.49999 -21.56533 -20.77475 -19.81843 -18.89297 -18.26052 -16.98559 -16.73198 -16.35458 -16.25913 -15.77671 -15.55660 -15.21365 -15.01216 -14.60946 -14.40747 -14.03843 -13.89248 -13.61874 -13.50247 -13.09714 -12.90864 -12.78186 -12.41956 -12.39743 -12.10983 -12.00614 -11.77036 -11.54039 -11.20664 -10.81628 -10.37395 -9.83603 -9.67219 -8.98637 -8.48968 -6.17224 0.54886 0.58381 1.15671 1.35087 1.42793 1.53155 1.87741 2.16432 2.78339 3.12858 3.47011 3.68887 3.93841 4.05291 4.17203 4.18033 4.28505 4.33464 4.50611 4.56656 4.56796 4.60929 4.71217 4.90465 4.97548 5.04019 5.06523 5.12944 5.24496 5.35852 5.49153 5.52515 5.64840 5.67554 5.74926 5.86341 6.00882 6.14508 6.28292 6.95913 7.75479 8.74254 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033760 B = 0.003327 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.192500 B = 8413.064314 C = 8557.817204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.168 4.168 3 C 0.083 3.917 4 O -0.269 6.269 5 N -0.499 5.499 6 C 0.138 3.862 7 H 0.068 0.932 8 C -0.124 4.124 9 C -0.172 4.172 10 C -0.049 4.049 11 C -0.201 4.201 12 C 0.119 3.881 13 O -0.230 6.230 14 C -0.414 4.414 15 H 0.103 0.897 16 C -0.022 4.022 17 N -0.920 5.920 18 Si 1.018 2.982 19 H -0.251 1.251 20 H -0.268 1.268 21 H -0.269 1.269 22 C -0.240 4.240 23 C -0.057 4.057 24 H 0.121 0.879 25 H 0.104 0.896 26 H 0.117 0.883 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.340 0.660 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.148 0.852 34 H 0.116 0.884 35 H 0.273 0.727 36 H 0.121 0.879 37 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.564 -17.555 -7.618 20.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.188 4.188 3 C 0.007 3.993 4 O -0.277 6.277 5 N -0.170 5.170 6 C 0.029 3.971 7 H 0.086 0.914 8 C -0.182 4.182 9 C -0.174 4.174 10 C -0.067 4.067 11 C -0.220 4.220 12 C 0.068 3.932 13 O -0.136 6.136 14 C -0.490 4.490 15 H 0.120 0.880 16 C -0.220 4.220 17 N -0.558 5.558 18 Si 0.838 3.162 19 H -0.174 1.174 20 H -0.193 1.193 21 H -0.194 1.194 22 C -0.260 4.260 23 C -0.075 4.075 24 H 0.139 0.861 25 H 0.122 0.878 26 H 0.135 0.865 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.157 0.843 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.165 0.835 34 H 0.134 0.866 35 H 0.082 0.918 36 H 0.139 0.861 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.062 -17.483 -8.118 20.529 hybrid contribution -0.361 0.913 1.524 1.813 sum -7.423 -16.570 -6.594 19.317 Atomic orbital electron populations 1.24072 0.95100 1.03428 0.97922 1.22746 0.96094 0.97598 1.02313 1.21580 0.88024 0.96377 0.93363 1.90754 1.46704 1.28188 1.62091 1.66881 1.06526 0.94659 1.48982 1.20302 0.91595 0.92764 0.92475 0.91406 1.21687 0.95036 1.00849 1.00632 1.19568 1.09765 0.94546 0.93513 1.20771 0.95983 0.89964 0.99970 1.20466 1.10170 0.99270 0.92138 1.19965 0.93222 0.86007 0.94008 1.83949 1.78631 1.26772 1.24245 1.21866 1.51957 0.95648 0.79484 0.88006 1.26585 0.95949 0.93388 1.06056 1.70186 1.48229 0.98920 1.38430 0.84531 0.78527 0.79583 0.73584 1.17442 1.19335 1.19373 1.21226 1.11200 0.92962 1.00564 1.20911 0.95848 0.96169 0.94573 0.86137 0.87751 0.86494 0.92437 0.91351 0.84322 0.91645 0.91830 0.92226 0.83459 0.86575 0.91785 0.86133 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 14.31 67.77 0.97 -1.19 16 2 C -0.17 -2.74 9.89 25.64 0.25 -2.49 16 3 C 0.08 1.60 6.80 71.24 0.48 2.08 16 4 O -0.27 -6.66 11.21 -50.17 -0.56 -7.22 16 5 N -0.50 -12.19 6.59 -171.79 -1.13 -13.32 16 6 C 0.14 3.51 3.16 44.17 0.14 3.65 16 7 H 0.07 1.73 7.91 -2.39 -0.02 1.71 16 8 C -0.12 -2.86 9.50 71.98 0.68 -2.17 16 9 C -0.17 -5.27 4.72 -19.83 -0.09 -5.36 16 10 C -0.05 -1.59 8.90 22.25 0.20 -1.39 16 11 C -0.20 -8.34 9.99 22.39 0.22 -8.11 16 12 C 0.12 5.80 6.65 22.58 0.15 5.95 16 13 O -0.23 -13.66 9.76 -22.75 -0.22 -13.88 16 14 C -0.41 -23.82 9.49 67.92 0.64 -23.18 16 15 H 0.10 5.38 5.20 -2.91 -0.02 5.37 16 16 C -0.02 -1.25 5.49 84.83 0.47 -0.78 16 17 N -0.92 -56.07 13.67 21.61 0.30 -55.78 16 18 Si 1.02 42.45 29.55 68.60 2.03 44.48 16 19 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 20 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 21 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 22 C -0.24 -10.23 9.17 22.39 0.21 -10.02 16 23 C -0.06 -1.90 9.66 22.25 0.21 -1.69 16 24 H 0.12 1.13 8.06 -2.91 -0.02 1.11 16 25 H 0.10 1.20 7.90 -2.91 -0.02 1.18 16 26 H 0.12 1.84 8.06 -2.91 -0.02 1.82 16 27 H 0.06 1.01 7.86 -2.39 -0.02 1.00 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.34 8.10 7.97 -89.70 -0.71 7.39 16 30 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.36 16 32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.15 3.96 7.71 -2.91 -0.02 3.94 16 34 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 35 H 0.27 15.20 8.31 -92.70 -0.77 14.42 16 36 H 0.12 5.23 5.64 -2.91 -0.02 5.22 16 37 H 0.14 3.82 8.03 -2.91 -0.02 3.80 16 Total: -1.00 -67.71 323.10 5.29 -62.42 By element: Atomic # 1 Polarization: 27.67 SS G_CDS: 0.35 Total: 28.02 kcal Atomic # 6 Polarization: -49.25 SS G_CDS: 4.54 Total: -44.71 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -0.84 Total: -69.10 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.78 Total: -21.11 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -67.71 5.29 -62.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000387190342.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.385 kcal (2) G-P(sol) polarization free energy of solvation -67.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds