Wall clock time and date at job start Mon Mar 30 2020 06:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46832 * 2 1 4 4 O 1.33654 * 125.79876 * 270.02381 * 3 2 1 5 5 C 1.34215 * 110.90943 * 180.02562 * 4 3 2 6 6 C 1.34181 * 109.12289 * 359.97438 * 5 4 3 7 7 C 1.36414 * 125.80272 * 89.71832 * 3 2 1 8 8 C 1.47382 * 127.19080 * 359.96221 * 7 3 2 9 9 O 1.21609 * 119.99901 * 326.86680 * 8 7 3 10 10 N 1.34775 * 119.99801 * 146.86996 * 8 7 3 11 11 C 1.47424 * 125.65117 * 4.15609 * 10 8 7 12 12 C 1.54905 * 104.83267 * 204.08962 * 11 10 8 13 13 C 1.55155 * 101.58481 * 322.99144 * 12 11 10 14 14 H 1.09002 * 110.71829 * 277.13816 * 13 12 11 15 15 C 1.50691 * 110.72407 * 154.04241 * 13 12 11 16 16 H 1.08001 * 119.99997 * 359.97438 * 15 13 12 17 17 C 1.37879 * 120.00067 * 180.02562 * 15 13 12 18 18 N 1.31516 * 120.00181 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99889 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47119 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47130 * 120.00004 * 19 17 15 22 22 H 1.48506 * 109.46967 * 239.99608 * 19 17 15 23 23 C 1.47021 * 125.64614 * 183.84116 * 10 8 7 24 24 H 1.09002 * 109.47324 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47263 * 59.99762 * 1 2 3 26 26 H 1.08999 * 109.47143 * 300.00383 * 1 2 3 27 27 H 1.08993 * 109.46898 * 119.99809 * 2 1 3 28 28 H 1.08993 * 109.46717 * 240.00158 * 2 1 3 29 29 H 1.07998 * 125.44520 * 180.02562 * 5 4 3 30 30 H 1.07995 * 127.02625 * 180.02562 * 6 5 4 31 31 H 1.08997 * 110.36573 * 322.92885 * 11 10 8 32 32 H 1.08998 * 110.37012 * 85.14047 * 11 10 8 33 33 H 1.09007 * 111.00412 * 81.06220 * 12 11 10 34 34 H 1.08995 * 111.00760 * 204.91369 * 12 11 10 35 35 H 0.97001 * 120.00329 * 179.97438 * 18 17 15 36 36 H 1.08993 * 109.88750 * 298.39884 * 23 10 8 37 37 H 1.09005 * 109.87806 * 59.56308 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2924 2.1581 -1.0840 5 6 2.7254 3.3808 -0.7392 6 6 2.7587 3.4741 0.5990 7 6 2.2931 2.1751 1.1064 8 6 2.1422 1.7712 2.5157 9 8 1.2571 1.0013 2.8361 10 7 2.9851 2.2553 3.4493 11 6 4.0417 3.2567 3.2166 12 6 5.0719 3.0165 4.3483 13 6 4.1464 2.6604 5.5416 14 1 3.7649 3.5641 6.0168 15 6 4.8741 1.8005 6.5426 16 1 5.9021 1.5197 6.3670 17 6 4.2273 1.3714 7.6821 18 7 2.9753 1.7130 7.8957 19 14 5.1291 0.3049 8.9226 20 1 6.5166 0.0635 8.4516 21 1 5.1650 0.9964 10.2364 22 1 4.4224 -0.9933 9.0656 23 6 2.9989 1.8768 4.8699 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 3.0019 4.1648 -1.4285 30 1 3.0615 4.3299 1.1839 31 1 4.5048 3.1001 2.2425 32 1 3.6308 4.2641 3.2829 33 1 5.7329 2.1847 4.1047 34 1 5.6442 3.9210 4.5541 35 1 2.5201 1.4108 8.6972 36 1 2.0476 2.1392 5.3328 37 1 3.1775 0.8059 4.9665 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397593704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:00 Heat of formation + Delta-G solvation = -31.200615 kcal Electronic energy + Delta-G solvation = -19936.115834 eV Core-core repulsion = 16872.682151 eV Total energy + Delta-G solvation = -3063.433683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.48249 -39.06329 -36.66223 -33.95496 -33.20090 -32.46764 -30.45753 -28.71207 -28.07243 -25.35552 -23.80232 -23.09723 -21.68074 -20.85463 -19.50950 -18.52102 -17.18006 -16.52444 -16.15496 -15.77054 -15.28176 -14.94031 -14.44754 -14.30724 -14.01877 -13.37057 -13.05833 -12.62340 -12.50020 -12.43937 -12.21761 -11.88768 -11.63078 -11.50931 -11.34986 -10.97498 -10.93754 -10.58998 -10.54223 -9.95574 -9.68435 -9.39616 -9.27930 -9.05732 -8.52931 -8.51735 -7.78834 -6.10826 -4.15487 1.59576 2.20077 2.86541 3.27124 3.35871 3.38848 3.54940 3.79804 4.38751 4.54321 4.92680 4.98589 5.13501 5.22886 5.29510 5.43157 5.50210 5.55266 5.69165 5.75879 5.87797 5.90088 6.00842 6.12924 6.23789 6.31604 6.40228 6.48861 6.72339 6.87937 6.94696 7.05887 7.13411 7.47535 7.67286 7.87766 8.26835 8.30074 8.78035 8.89260 9.50580 10.99262 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029834 B = 0.004995 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.314390 B = 5604.536673 C = 6175.483984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.042 4.042 3 C 0.059 3.941 4 O -0.178 6.178 5 C -0.048 4.048 6 C -0.185 4.185 7 C -0.222 4.222 8 C 0.589 3.411 9 O -0.548 6.548 10 N -0.605 5.605 11 C 0.099 3.901 12 C -0.130 4.130 13 C 0.045 3.955 14 H 0.042 0.958 15 C -0.517 4.517 16 H 0.061 0.939 17 C 0.064 3.936 18 N -0.886 5.886 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.126 3.874 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.100 0.900 28 H 0.079 0.921 29 H 0.205 0.795 30 H 0.157 0.843 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.263 0.737 36 H 0.060 0.940 37 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.111 2.632 -16.332 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 C 0.007 3.993 4 O -0.075 6.075 5 C -0.114 4.114 6 C -0.205 4.205 7 C -0.227 4.227 8 C 0.378 3.622 9 O -0.428 6.428 10 N -0.337 5.337 11 C -0.024 4.024 12 C -0.168 4.168 13 C 0.026 3.974 14 H 0.060 0.940 15 C -0.556 4.556 16 H 0.080 0.920 17 C -0.139 4.139 18 N -0.523 5.523 19 Si 0.722 3.278 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.209 1.209 23 C 0.005 3.995 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.091 0.909 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.222 0.778 30 H 0.175 0.825 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.810 2.082 -16.342 16.494 hybrid contribution 0.518 -0.182 0.895 1.050 sum -0.292 1.899 -15.446 15.565 Atomic orbital electron populations 1.21729 0.93274 1.02455 1.02828 1.20187 0.97163 0.86466 1.04123 1.22695 0.98901 0.94650 0.83063 1.83714 1.65667 1.23107 1.35002 1.23789 1.04948 0.86321 0.96296 1.23015 1.04967 0.98199 0.94297 1.21330 1.11261 0.95791 0.94294 1.16883 0.81358 0.80835 0.83155 1.90748 1.33418 1.36961 1.81647 1.48713 1.32632 1.41382 1.10950 1.22437 0.89139 0.91429 0.99438 1.22884 0.97154 1.00883 0.95844 1.19742 0.90493 0.96074 0.91127 0.94006 1.21047 0.98371 1.32063 1.04074 0.92040 1.25047 0.94902 0.96002 0.97952 1.69958 1.10309 1.44831 1.27240 0.86504 0.79928 0.80290 0.81122 1.19679 1.20926 1.20916 1.22478 1.01217 1.00268 0.75557 0.91664 0.92915 0.90865 0.88129 0.90277 0.77827 0.82541 0.91712 0.92389 0.91589 0.91493 0.92722 0.92118 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.89 37.16 0.37 -1.42 16 2 C -0.04 -0.55 5.86 -27.88 -0.16 -0.71 16 3 C 0.06 0.88 6.62 -34.96 -0.23 0.65 16 4 O -0.18 -2.35 10.52 7.65 0.08 -2.27 16 5 C -0.05 -0.53 12.03 29.30 0.35 -0.18 16 6 C -0.19 -2.47 9.14 -37.45 -0.34 -2.82 16 7 C -0.22 -3.73 5.80 -103.27 -0.60 -4.33 16 8 C 0.59 12.17 7.58 -12.54 -0.10 12.07 16 9 O -0.55 -12.77 15.75 5.27 0.08 -12.69 16 10 N -0.60 -12.65 3.33 -171.80 -0.57 -13.22 16 11 C 0.10 1.70 5.41 -2.53 -0.01 1.69 16 12 C -0.13 -2.48 6.50 -24.59 -0.16 -2.64 16 13 C 0.04 1.08 2.77 -89.94 -0.25 0.83 16 14 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 15 C -0.52 -13.74 8.38 -34.44 -0.29 -14.03 16 16 H 0.06 1.60 7.76 -52.49 -0.41 1.19 16 17 C 0.06 1.74 5.36 -17.82 -0.10 1.65 16 18 N -0.89 -25.28 12.77 55.43 0.71 -24.57 16 19 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 20 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 C 0.13 3.08 5.78 -3.06 -0.02 3.06 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.07 1.10 7.54 -51.93 -0.39 0.71 16 27 H 0.10 1.47 7.49 -51.93 -0.39 1.08 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.21 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.16 1.84 6.71 -52.49 -0.35 1.48 16 31 H 0.06 0.98 6.56 -51.93 -0.34 0.64 16 32 H 0.06 0.91 7.76 -51.93 -0.40 0.50 16 33 H 0.07 1.28 8.03 -51.93 -0.42 0.86 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 36 H 0.06 1.63 8.14 -51.93 -0.42 1.21 16 37 H 0.06 1.61 7.82 -51.93 -0.41 1.20 16 LS Contribution 309.24 15.07 4.66 4.66 Total: -1.00 -31.06 309.24 -6.80 -37.86 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.20 Total: 0.47 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.54 Total: -6.19 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.14 Total: -37.79 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: 0.16 Total: -14.96 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -31.06 -6.80 -37.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397593704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.661 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds