Wall clock time and date at job start Mon Mar 30 2020 06:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50703 * 109.46832 * 2 1 4 4 O 1.33654 * 125.79876 * 270.02381 * 3 2 1 5 5 C 1.34215 * 110.90943 * 180.02562 * 4 3 2 6 6 C 1.34181 * 109.12289 * 359.97438 * 5 4 3 7 7 C 1.36414 * 125.80272 * 89.71832 * 3 2 1 8 8 C 1.47382 * 127.19080 * 359.96221 * 7 3 2 9 9 O 1.21609 * 119.99901 * 326.86680 * 8 7 3 10 10 N 1.34775 * 119.99801 * 146.86996 * 8 7 3 11 11 C 1.47424 * 125.65117 * 4.15609 * 10 8 7 12 12 C 1.54905 * 104.83267 * 204.08962 * 11 10 8 13 13 C 1.55155 * 101.58481 * 322.99144 * 12 11 10 14 14 H 1.09002 * 110.71829 * 277.13816 * 13 12 11 15 15 C 1.50691 * 110.72407 * 154.04241 * 13 12 11 16 16 H 1.08001 * 119.99997 * 359.97438 * 15 13 12 17 17 C 1.37879 * 120.00067 * 180.02562 * 15 13 12 18 18 N 1.31516 * 120.00181 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99889 * 179.97438 * 17 15 13 20 20 H 1.48495 * 109.47119 * 359.97438 * 19 17 15 21 21 H 1.48507 * 109.47130 * 120.00004 * 19 17 15 22 22 H 1.48506 * 109.46967 * 239.99608 * 19 17 15 23 23 C 1.47021 * 125.64614 * 183.84116 * 10 8 7 24 24 H 1.09002 * 109.47324 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47263 * 59.99762 * 1 2 3 26 26 H 1.08999 * 109.47143 * 300.00383 * 1 2 3 27 27 H 1.08993 * 109.46898 * 119.99809 * 2 1 3 28 28 H 1.08993 * 109.46717 * 240.00158 * 2 1 3 29 29 H 1.07998 * 125.44520 * 180.02562 * 5 4 3 30 30 H 1.07995 * 127.02625 * 180.02562 * 6 5 4 31 31 H 1.08997 * 110.36573 * 322.92885 * 11 10 8 32 32 H 1.08998 * 110.37012 * 85.14047 * 11 10 8 33 33 H 1.09007 * 111.00412 * 81.06220 * 12 11 10 34 34 H 1.08995 * 111.00760 * 204.91369 * 12 11 10 35 35 H 0.97001 * 120.00329 * 179.97438 * 18 17 15 36 36 H 1.08993 * 109.88750 * 298.39884 * 23 10 8 37 37 H 1.09005 * 109.87806 * 59.56308 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2924 2.1581 -1.0840 5 6 2.7254 3.3808 -0.7392 6 6 2.7587 3.4741 0.5990 7 6 2.2931 2.1751 1.1064 8 6 2.1422 1.7712 2.5157 9 8 1.2571 1.0013 2.8361 10 7 2.9851 2.2553 3.4493 11 6 4.0417 3.2567 3.2166 12 6 5.0719 3.0165 4.3483 13 6 4.1464 2.6604 5.5416 14 1 3.7649 3.5641 6.0168 15 6 4.8741 1.8005 6.5426 16 1 5.9021 1.5197 6.3670 17 6 4.2273 1.3714 7.6821 18 7 2.9753 1.7130 7.8957 19 14 5.1291 0.3049 8.9226 20 1 6.5166 0.0635 8.4516 21 1 5.1650 0.9964 10.2364 22 1 4.4224 -0.9933 9.0656 23 6 2.9989 1.8768 4.8699 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.8932 -0.5138 -0.8900 29 1 3.0019 4.1648 -1.4285 30 1 3.0615 4.3299 1.1839 31 1 4.5048 3.1001 2.2425 32 1 3.6308 4.2641 3.2829 33 1 5.7329 2.1847 4.1047 34 1 5.6442 3.9210 4.5541 35 1 2.5201 1.4108 8.6972 36 1 2.0476 2.1392 5.3328 37 1 3.1775 0.8059 4.9665 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397593704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:19:59 Heat of formation + Delta-G solvation = -50.494152 kcal Electronic energy + Delta-G solvation = -19936.952465 eV Core-core repulsion = 16872.682151 eV Total energy + Delta-G solvation = -3064.270313 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.53516 -40.70921 -38.37368 -35.05909 -35.00459 -33.77765 -32.17942 -29.86972 -29.72726 -27.21562 -25.24999 -24.31611 -23.00756 -22.15315 -21.27390 -19.76349 -18.62379 -18.40809 -17.35354 -17.17743 -16.81700 -16.41946 -16.29882 -15.44274 -15.22788 -14.88352 -14.38330 -14.27910 -14.05513 -13.72271 -13.49550 -13.33918 -13.24637 -13.16696 -12.85091 -12.52279 -12.43933 -12.30783 -11.96238 -11.71143 -11.22392 -11.11824 -10.99523 -10.70614 -10.61178 -9.69629 -9.41837 -8.20158 -6.31496 0.40870 1.18254 1.39811 1.42306 1.53637 1.82079 2.05349 2.27213 2.41922 3.13080 3.58174 3.63442 3.94126 3.97380 4.13806 4.28383 4.30465 4.36489 4.43851 4.56556 4.59808 4.69641 4.77745 4.91110 4.93546 5.01096 5.07909 5.11541 5.19172 5.27190 5.32034 5.41812 5.54517 5.64464 5.83176 6.08024 6.24997 6.65834 6.81162 7.16102 7.38614 8.89969 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.029834 B = 0.004995 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.314390 B = 5604.536673 C = 6175.483984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.045 4.045 3 C 0.062 3.938 4 O -0.174 6.174 5 C -0.019 4.019 6 C -0.203 4.203 7 C -0.257 4.257 8 C 0.583 3.417 9 O -0.589 6.589 10 N -0.612 5.612 11 C 0.104 3.896 12 C -0.118 4.118 13 C 0.037 3.963 14 H 0.019 0.981 15 C -0.529 4.529 16 H 0.066 0.934 17 C 0.011 3.989 18 N -0.923 5.923 19 Si 0.959 3.041 20 H -0.260 1.260 21 H -0.277 1.277 22 H -0.287 1.287 23 C 0.146 3.854 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.037 0.963 27 H 0.075 0.925 28 H 0.112 0.888 29 H 0.257 0.743 30 H 0.173 0.827 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.262 0.738 36 H 0.021 0.979 37 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 3.656 -19.071 19.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 C 0.009 3.991 4 O -0.070 6.070 5 C -0.084 4.084 6 C -0.222 4.222 7 C -0.261 4.261 8 C 0.374 3.626 9 O -0.472 6.472 10 N -0.344 5.344 11 C -0.017 4.017 12 C -0.156 4.156 13 C 0.018 3.982 14 H 0.037 0.963 15 C -0.568 4.568 16 H 0.084 0.916 17 C -0.189 4.189 18 N -0.561 5.561 19 Si 0.784 3.216 20 H -0.184 1.184 21 H -0.203 1.203 22 H -0.213 1.213 23 C 0.023 3.977 24 H 0.101 0.899 25 H 0.089 0.911 26 H 0.056 0.944 27 H 0.094 0.906 28 H 0.130 0.870 29 H 0.273 0.727 30 H 0.190 0.810 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.933 3.133 -19.110 19.388 hybrid contribution -0.049 -0.480 1.674 1.742 sum 0.885 2.653 -17.436 17.659 Atomic orbital electron populations 1.21676 0.92847 1.03355 1.01834 1.20245 0.97491 0.86038 1.04470 1.22860 0.97990 0.95178 0.83075 1.83763 1.65338 1.23883 1.34005 1.24742 1.01517 0.85834 0.96311 1.23192 1.06309 0.97239 0.95452 1.21144 1.14377 0.98522 0.92060 1.17559 0.80376 0.79885 0.84776 1.90711 1.35058 1.38773 1.82682 1.48756 1.33887 1.42372 1.09350 1.22624 0.87617 0.91371 1.00119 1.22815 0.96850 1.02048 0.93909 1.19679 0.91314 0.94628 0.92614 0.96263 1.21451 0.98687 1.31991 1.04625 0.91590 1.25889 0.95564 0.97338 1.00090 1.70098 1.11895 1.46307 1.27833 0.85490 0.79117 0.78191 0.78810 1.18362 1.20295 1.21282 1.21910 0.99514 0.98073 0.78223 0.89925 0.91141 0.94415 0.90610 0.87002 0.72679 0.80983 0.88552 0.90211 0.91750 0.88650 0.92889 0.96042 0.95746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 9.89 71.98 0.71 -2.66 16 2 C -0.05 -1.15 5.86 29.85 0.17 -0.97 16 3 C 0.06 1.74 6.62 25.26 0.17 1.91 16 4 O -0.17 -3.92 10.52 4.45 0.05 -3.87 16 5 C -0.02 -0.33 12.03 66.89 0.80 0.48 16 6 C -0.20 -4.74 9.14 23.65 0.22 -4.52 16 7 C -0.26 -8.37 5.80 -18.99 -0.11 -8.48 16 8 C 0.58 24.83 7.58 86.65 0.66 25.49 16 9 O -0.59 -29.28 15.75 -4.06 -0.06 -29.35 16 10 N -0.61 -26.19 3.33 -815.71 -2.71 -28.90 16 11 C 0.10 3.41 5.41 86.85 0.47 3.87 16 12 C -0.12 -4.37 6.50 31.98 0.21 -4.17 16 13 C 0.04 1.83 2.77 -10.35 -0.03 1.80 16 14 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 15 C -0.53 -28.66 8.38 25.60 0.21 -28.45 16 16 H 0.07 3.43 7.76 -2.91 -0.02 3.41 16 17 C 0.01 0.59 5.36 84.65 0.45 1.04 16 18 N -0.92 -54.92 12.77 21.45 0.27 -54.65 16 19 Si 0.96 43.72 29.54 68.60 2.03 45.75 16 20 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 C 0.15 7.56 5.78 86.73 0.50 8.06 16 24 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.04 1.17 7.54 -2.39 -0.02 1.15 16 27 H 0.08 2.29 7.49 -2.39 -0.02 2.28 16 28 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.26 1.54 8.06 -2.91 -0.02 1.52 16 30 H 0.17 3.37 6.71 -2.91 -0.02 3.35 16 31 H 0.10 2.60 6.56 -2.39 -0.02 2.58 16 32 H 0.08 2.29 7.76 -2.39 -0.02 2.27 16 33 H 0.06 2.40 8.03 -2.38 -0.02 2.38 16 34 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.02 1.40 7.82 -2.38 -0.02 1.38 16 Total: -1.00 -72.55 309.24 5.07 -67.48 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: 1.06 Total: 10.14 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: 4.44 Total: -6.60 kcal Atomic # 7 Polarization: -81.11 SS G_CDS: -2.44 Total: -83.55 kcal Atomic # 8 Polarization: -33.20 SS G_CDS: -0.02 Total: -33.22 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -72.55 5.07 -67.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397593704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.985 kcal (2) G-P(sol) polarization free energy of solvation -72.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds