Wall clock time and date at job start Mon Mar 30 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47051 * 2 1 4 4 O 1.33645 * 125.80391 * 270.00000 * 3 2 1 5 5 C 1.34217 * 110.91082 * 180.02562 * 4 3 2 6 6 C 1.34176 * 109.12237 * 0.02562 * 5 4 3 7 7 C 1.36420 * 125.79606 * 90.00569 * 3 2 1 8 8 C 1.47377 * 127.19579 * 0.25552 * 7 3 2 9 9 O 1.21613 * 119.99747 * 359.71373 * 8 7 3 10 10 N 1.34771 * 119.99940 * 179.70882 * 8 7 3 11 11 C 1.47018 * 125.65223 * 0.02729 * 10 8 7 12 12 C 1.54319 * 107.27546 * 181.02248 * 11 10 8 13 13 C 1.55163 * 102.94258 * 22.19247 * 12 11 10 14 14 H 1.09002 * 111.00124 * 82.60694 * 13 12 11 15 15 C 1.50698 * 111.00801 * 206.42529 * 13 12 11 16 16 H 1.08003 * 119.99695 * 0.02562 * 15 13 12 17 17 C 1.37867 * 120.00183 * 179.97438 * 15 13 12 18 18 N 1.31521 * 120.00137 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00077 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46980 * 60.00234 * 19 17 15 21 21 H 1.48502 * 109.47359 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47469 * 300.00248 * 19 17 15 23 23 C 1.47427 * 125.64476 * 179.71800 * 10 8 7 24 24 H 1.09000 * 109.46730 * 299.99909 * 1 2 3 25 25 H 1.09000 * 109.47032 * 59.99250 * 1 2 3 26 26 H 1.08994 * 109.47449 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46730 * 240.00091 * 2 1 3 28 28 H 1.09000 * 109.47032 * 120.00750 * 2 1 3 29 29 H 1.07996 * 125.43832 * 180.02562 * 5 4 3 30 30 H 1.07993 * 127.02556 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.88254 * 300.44031 * 11 10 8 32 32 H 1.08998 * 109.88074 * 61.44486 * 11 10 8 33 33 H 1.08998 * 110.72546 * 140.55568 * 12 11 10 34 34 H 1.08998 * 110.72326 * 263.83068 * 12 11 10 35 35 H 0.97000 * 119.99784 * 179.97438 * 18 17 15 36 36 H 1.08994 * 110.37129 * 274.74657 * 23 10 8 37 37 H 1.08999 * 110.36725 * 37.07387 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2930 2.1580 -1.0839 5 6 2.7258 3.3807 -0.7389 6 6 2.7597 3.4737 0.5992 7 6 2.2984 2.1731 1.1065 8 6 2.1598 1.7649 2.5158 9 8 1.7646 0.6477 2.7892 10 7 2.4711 2.6296 3.5016 11 6 2.9576 4.0042 3.3137 12 6 3.2031 4.5991 4.7163 13 6 3.3803 3.3379 5.6026 14 1 4.3999 2.9574 5.5413 15 6 2.9986 3.6241 7.0320 16 1 2.6560 4.6092 7.3125 17 6 3.0857 2.6283 7.9815 18 7 3.5023 1.4285 7.6398 19 14 2.6132 2.9833 9.7535 20 1 1.1920 3.4103 9.8108 21 1 2.7951 1.7562 10.5698 22 1 3.4772 4.0659 10.2889 23 6 2.3741 2.3558 4.9469 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 3.0027 4.1645 -1.4283 30 1 3.0625 4.3295 1.1841 31 1 3.8888 3.9937 2.7473 32 1 2.2087 4.5933 2.7845 33 1 4.1081 5.2065 4.7246 34 1 2.3427 5.1827 5.0437 35 1 3.5639 0.7280 8.3079 36 1 1.3628 2.5514 5.3031 37 1 2.6587 1.3250 5.1577 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397593707.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:02 Heat of formation + Delta-G solvation = -26.564359 kcal Electronic energy + Delta-G solvation = -19927.213999 eV Core-core repulsion = 16863.981359 eV Total energy + Delta-G solvation = -3063.232640 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.47838 -39.07494 -36.68267 -33.91530 -33.25323 -32.43662 -30.47261 -28.69907 -28.13591 -25.37189 -23.84064 -23.09973 -21.57949 -20.91032 -19.57970 -18.52576 -17.03737 -16.61060 -16.14101 -15.82766 -15.19637 -14.82914 -14.47152 -14.24726 -14.01501 -13.45575 -13.09923 -12.65751 -12.58337 -12.41023 -12.18466 -11.80846 -11.73816 -11.49985 -11.29075 -10.94566 -10.92574 -10.58284 -10.51389 -9.91785 -9.64485 -9.41656 -9.25929 -9.04431 -8.54685 -8.50964 -7.79616 -6.09840 -4.15519 1.55973 2.18495 2.87964 3.29274 3.35211 3.36448 3.73391 3.81856 4.38548 4.55298 4.93897 5.00416 5.14243 5.23263 5.29976 5.44500 5.48767 5.56767 5.65802 5.67328 5.87422 5.88797 6.03924 6.15343 6.26481 6.27913 6.41202 6.45908 6.73504 6.84960 6.96956 7.04395 7.15626 7.44325 7.67317 7.89292 8.27453 8.30078 8.79881 8.88402 9.50527 10.99791 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032492 B = 0.004881 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.542287 B = 5734.868982 C = 6379.527222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.049 4.049 3 C 0.068 3.932 4 O -0.179 6.179 5 C -0.051 4.051 6 C -0.194 4.194 7 C -0.228 4.228 8 C 0.591 3.409 9 O -0.551 6.551 10 N -0.605 5.605 11 C 0.100 3.900 12 C -0.132 4.132 13 C 0.047 3.953 14 H 0.043 0.957 15 C -0.519 4.519 16 H 0.061 0.939 17 C 0.065 3.935 18 N -0.885 5.885 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.118 3.882 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.115 0.885 29 H 0.205 0.795 30 H 0.166 0.834 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.264 0.736 36 H 0.054 0.946 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.002 3.255 -15.816 16.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.086 4.086 3 C 0.015 3.985 4 O -0.076 6.076 5 C -0.116 4.116 6 C -0.213 4.213 7 C -0.232 4.232 8 C 0.380 3.620 9 O -0.432 6.432 10 N -0.337 5.337 11 C -0.024 4.024 12 C -0.170 4.170 13 C 0.028 3.972 14 H 0.061 0.939 15 C -0.557 4.557 16 H 0.079 0.921 17 C -0.138 4.138 18 N -0.522 5.522 19 Si 0.723 3.277 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.202 1.202 23 C -0.003 4.003 24 H 0.083 0.917 25 H 0.071 0.929 26 H 0.085 0.915 27 H 0.096 0.904 28 H 0.133 0.867 29 H 0.221 0.779 30 H 0.183 0.817 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.221 2.342 -15.919 16.243 hybrid contribution -0.097 0.519 1.067 1.191 sum -2.318 2.861 -14.852 15.302 Atomic orbital electron populations 1.21679 0.93564 1.02440 1.02277 1.20357 0.96859 0.86512 1.04907 1.22798 0.98205 0.94445 0.83078 1.83716 1.65545 1.23174 1.35138 1.23829 1.05111 0.86274 0.96412 1.23453 1.04922 0.98504 0.94445 1.21345 1.12050 0.95491 0.94322 1.16841 0.78065 0.84081 0.83011 1.90719 1.48523 1.20148 1.83795 1.48650 1.63402 1.13328 1.08312 1.22294 0.97621 0.83196 0.99265 1.22782 1.01087 0.99922 0.93168 1.19882 0.95347 0.88786 0.93202 0.93926 1.20935 1.45634 0.97229 0.91951 0.92118 1.25046 0.94631 0.95072 0.99081 1.69945 1.45602 1.02170 1.34491 0.86609 0.79112 0.77642 0.84379 1.20144 1.21228 1.20169 1.22817 1.00225 1.02802 0.74418 0.91733 0.92915 0.91506 0.90395 0.86703 0.77870 0.81714 0.92277 0.92549 0.91646 0.91499 0.92586 0.92810 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.90 37.16 0.37 -1.35 16 2 C -0.05 -0.66 5.94 -27.88 -0.17 -0.82 16 3 C 0.07 1.02 6.63 -34.96 -0.23 0.79 16 4 O -0.18 -2.40 10.52 7.67 0.08 -2.32 16 5 C -0.05 -0.57 12.03 29.30 0.35 -0.22 16 6 C -0.19 -2.64 9.42 -37.45 -0.35 -2.99 16 7 C -0.23 -3.88 6.25 -103.27 -0.64 -4.52 16 8 C 0.59 12.29 7.84 -12.54 -0.10 12.20 16 9 O -0.55 -12.81 15.10 5.27 0.08 -12.73 16 10 N -0.61 -12.71 3.32 -171.67 -0.57 -13.28 16 11 C 0.10 1.71 5.00 -3.07 -0.02 1.69 16 12 C -0.13 -2.50 6.39 -24.90 -0.16 -2.66 16 13 C 0.05 1.14 2.86 -89.50 -0.26 0.88 16 14 H 0.04 1.13 8.14 -51.93 -0.42 0.70 16 15 C -0.52 -13.72 8.49 -34.45 -0.29 -14.01 16 16 H 0.06 1.55 7.76 -52.48 -0.41 1.15 16 17 C 0.07 1.76 5.37 -17.82 -0.10 1.67 16 18 N -0.89 -25.32 12.55 55.43 0.70 -24.62 16 19 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 23 C 0.12 2.88 5.90 -2.40 -0.01 2.86 16 24 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.11 1.76 6.48 -51.93 -0.34 1.43 16 29 H 0.20 1.37 8.06 -52.49 -0.42 0.95 16 30 H 0.17 1.97 4.87 -52.49 -0.26 1.72 16 31 H 0.06 0.92 6.86 -51.93 -0.36 0.56 16 32 H 0.06 0.85 7.01 -51.93 -0.36 0.48 16 33 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 34 H 0.07 1.25 8.01 -51.93 -0.42 0.83 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.05 1.36 8.03 -51.93 -0.42 0.94 16 37 H 0.08 2.22 7.64 -51.93 -0.40 1.82 16 LS Contribution 306.26 15.07 4.62 4.62 Total: -1.00 -30.88 306.26 -6.77 -37.65 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.04 Total: 1.33 kcal Atomic # 6 Polarization: -4.88 SS G_CDS: -1.61 Total: -6.49 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.12 Total: -37.90 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.16 Total: -15.04 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.88 -6.77 -37.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397593707.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.086 kcal (2) G-P(sol) polarization free energy of solvation -30.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds