Wall clock time and date at job start Mon Mar 30 2020 06:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50701 * 109.47051 * 2 1 4 4 O 1.33645 * 125.80391 * 270.00000 * 3 2 1 5 5 C 1.34217 * 110.91082 * 180.02562 * 4 3 2 6 6 C 1.34176 * 109.12237 * 0.02562 * 5 4 3 7 7 C 1.36420 * 125.79606 * 90.00569 * 3 2 1 8 8 C 1.47377 * 127.19579 * 0.25552 * 7 3 2 9 9 O 1.21613 * 119.99747 * 359.71373 * 8 7 3 10 10 N 1.34771 * 119.99940 * 179.70882 * 8 7 3 11 11 C 1.47018 * 125.65223 * 0.02729 * 10 8 7 12 12 C 1.54319 * 107.27546 * 181.02248 * 11 10 8 13 13 C 1.55163 * 102.94258 * 22.19247 * 12 11 10 14 14 H 1.09002 * 111.00124 * 82.60694 * 13 12 11 15 15 C 1.50698 * 111.00801 * 206.42529 * 13 12 11 16 16 H 1.08003 * 119.99695 * 0.02562 * 15 13 12 17 17 C 1.37867 * 120.00183 * 179.97438 * 15 13 12 18 18 N 1.31521 * 120.00137 * 0.02562 * 17 15 13 19 19 Si 1.86800 * 120.00077 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46980 * 60.00234 * 19 17 15 21 21 H 1.48502 * 109.47359 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47469 * 300.00248 * 19 17 15 23 23 C 1.47427 * 125.64476 * 179.71800 * 10 8 7 24 24 H 1.09000 * 109.46730 * 299.99909 * 1 2 3 25 25 H 1.09000 * 109.47032 * 59.99250 * 1 2 3 26 26 H 1.08994 * 109.47449 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46730 * 240.00091 * 2 1 3 28 28 H 1.09000 * 109.47032 * 120.00750 * 2 1 3 29 29 H 1.07996 * 125.43832 * 180.02562 * 5 4 3 30 30 H 1.07993 * 127.02556 * 180.02562 * 6 5 4 31 31 H 1.09000 * 109.88254 * 300.44031 * 11 10 8 32 32 H 1.08998 * 109.88074 * 61.44486 * 11 10 8 33 33 H 1.08998 * 110.72546 * 140.55568 * 12 11 10 34 34 H 1.08998 * 110.72326 * 263.83068 * 12 11 10 35 35 H 0.97000 * 119.99784 * 179.97438 * 18 17 15 36 36 H 1.08994 * 110.37129 * 274.74657 * 23 10 8 37 37 H 1.08999 * 110.36725 * 37.07387 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2930 2.1580 -1.0839 5 6 2.7258 3.3807 -0.7389 6 6 2.7597 3.4737 0.5992 7 6 2.2984 2.1731 1.1065 8 6 2.1598 1.7649 2.5158 9 8 1.7646 0.6477 2.7892 10 7 2.4711 2.6296 3.5016 11 6 2.9576 4.0042 3.3137 12 6 3.2031 4.5991 4.7163 13 6 3.3803 3.3379 5.6026 14 1 4.3999 2.9574 5.5413 15 6 2.9986 3.6241 7.0320 16 1 2.6560 4.6092 7.3125 17 6 3.0857 2.6283 7.9815 18 7 3.5023 1.4285 7.6398 19 14 2.6132 2.9833 9.7535 20 1 1.1920 3.4103 9.8108 21 1 2.7951 1.7562 10.5698 22 1 3.4772 4.0659 10.2889 23 6 2.3741 2.3558 4.9469 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 3.0027 4.1645 -1.4283 30 1 3.0625 4.3295 1.1841 31 1 3.8888 3.9937 2.7473 32 1 2.2087 4.5933 2.7845 33 1 4.1081 5.2065 4.7246 34 1 2.3427 5.1827 5.0437 35 1 3.5639 0.7280 8.3079 36 1 1.3628 2.5514 5.3031 37 1 2.6587 1.3250 5.1577 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397593707.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:02 Heat of formation + Delta-G solvation = -45.742817 kcal Electronic energy + Delta-G solvation = -19928.045639 eV Core-core repulsion = 16863.981359 eV Total energy + Delta-G solvation = -3064.064280 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.55027 -40.70704 -38.37481 -35.08819 -34.96750 -33.79580 -32.17837 -29.85620 -29.77014 -27.22185 -25.31472 -24.27695 -22.93040 -22.23773 -21.34864 -19.74688 -18.62920 -18.36317 -17.30711 -17.13387 -16.82760 -16.40938 -16.22915 -15.33582 -15.29450 -14.96857 -14.38600 -14.30833 -14.09469 -13.65279 -13.53108 -13.44912 -13.24878 -13.09778 -12.77562 -12.51985 -12.45335 -12.23087 -11.97119 -11.62599 -11.16261 -11.08764 -10.93554 -10.79106 -10.58527 -9.72581 -9.37765 -8.18066 -6.30726 0.33510 1.16809 1.43086 1.44766 1.52606 1.82463 2.19149 2.32677 2.42930 3.14700 3.58818 3.65613 3.91169 3.95243 4.14213 4.26205 4.29041 4.36597 4.43733 4.53483 4.61130 4.68687 4.80124 4.92483 4.96891 5.01232 5.10198 5.11832 5.18421 5.26370 5.34298 5.41862 5.50627 5.66138 5.83976 6.07308 6.25156 6.67645 6.82418 7.18297 7.39723 8.91320 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.032492 B = 0.004881 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.542287 B = 5734.868982 C = 6379.527222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.052 4.052 3 C 0.070 3.930 4 O -0.175 6.175 5 C -0.023 4.023 6 C -0.211 4.211 7 C -0.262 4.262 8 C 0.581 3.419 9 O -0.591 6.591 10 N -0.613 5.613 11 C 0.102 3.898 12 C -0.120 4.120 13 C 0.038 3.962 14 H 0.011 0.989 15 C -0.530 4.530 16 H 0.069 0.931 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.961 3.039 20 H -0.269 1.269 21 H -0.290 1.290 22 H -0.264 1.264 23 C 0.134 3.866 24 H 0.033 0.967 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.257 0.743 30 H 0.182 0.818 31 H 0.083 0.917 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.262 0.738 36 H 0.035 0.965 37 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.027 5.730 -18.067 19.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.089 4.089 3 C 0.016 3.984 4 O -0.071 6.071 5 C -0.088 4.088 6 C -0.230 4.230 7 C -0.267 4.267 8 C 0.373 3.627 9 O -0.475 6.475 10 N -0.345 5.345 11 C -0.019 4.019 12 C -0.158 4.158 13 C 0.019 3.981 14 H 0.029 0.971 15 C -0.568 4.568 16 H 0.088 0.912 17 C -0.189 4.189 18 N -0.562 5.562 19 Si 0.786 3.214 20 H -0.194 1.194 21 H -0.215 1.215 22 H -0.188 1.188 23 C 0.011 3.989 24 H 0.052 0.948 25 H 0.090 0.910 26 H 0.102 0.898 27 H 0.127 0.873 28 H 0.104 0.896 29 H 0.273 0.727 30 H 0.199 0.801 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.238 4.866 -18.195 18.967 hybrid contribution -0.075 -0.261 1.681 1.703 sum -2.313 4.605 -16.514 17.299 Atomic orbital electron populations 1.21638 0.92703 1.03424 1.01579 1.20384 0.97565 0.86033 1.04948 1.22969 0.97324 0.94934 0.83133 1.83764 1.65209 1.23956 1.34135 1.24788 1.01728 0.85808 0.96470 1.23610 1.06211 0.97559 0.95603 1.21183 1.15030 0.98263 0.92192 1.17512 0.77051 0.83474 0.84648 1.90683 1.50205 1.21883 1.84752 1.48690 1.63893 1.15165 1.06725 1.22510 0.99624 0.81122 0.98693 1.22712 1.02592 0.97719 0.92756 1.19793 0.93202 0.91441 0.93655 0.97095 1.21372 1.44815 0.97459 0.93173 0.91240 1.25918 0.94690 0.94824 1.03480 1.70111 1.47271 1.03198 1.35653 0.85565 0.79115 0.77509 0.79239 1.19435 1.21538 1.18822 1.22286 0.99036 1.00240 0.77302 0.94803 0.91018 0.89801 0.87307 0.89618 0.72695 0.80081 0.89934 0.89312 0.89143 0.90873 0.92943 0.94625 0.94823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.90 71.98 0.71 -2.50 16 2 C -0.05 -1.37 5.94 29.85 0.18 -1.19 16 3 C 0.07 2.01 6.63 25.26 0.17 2.18 16 4 O -0.17 -4.05 10.52 4.52 0.05 -4.00 16 5 C -0.02 -0.41 12.03 66.89 0.80 0.39 16 6 C -0.21 -5.03 9.42 23.65 0.22 -4.81 16 7 C -0.26 -8.73 6.25 -18.99 -0.12 -8.84 16 8 C 0.58 25.04 7.84 86.65 0.68 25.72 16 9 O -0.59 -29.41 15.10 -4.07 -0.06 -29.47 16 10 N -0.61 -26.34 3.32 -815.29 -2.71 -29.05 16 11 C 0.10 3.31 5.00 86.73 0.43 3.75 16 12 C -0.12 -4.37 6.39 31.78 0.20 -4.17 16 13 C 0.04 1.91 2.86 -10.07 -0.03 1.88 16 14 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 15 C -0.53 -28.44 8.49 25.60 0.22 -28.22 16 16 H 0.07 3.52 7.76 -2.91 -0.02 3.50 16 17 C 0.01 0.57 5.37 84.65 0.45 1.03 16 18 N -0.92 -55.34 12.55 21.44 0.27 -55.08 16 19 Si 0.96 43.37 29.54 68.60 2.03 45.39 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 22 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 23 C 0.13 6.90 5.90 86.93 0.51 7.41 16 24 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.09 2.77 6.48 -2.39 -0.02 2.75 16 29 H 0.26 1.67 8.06 -2.91 -0.02 1.65 16 30 H 0.18 3.57 4.87 -2.91 -0.01 3.55 16 31 H 0.08 2.32 6.86 -2.39 -0.02 2.30 16 32 H 0.09 2.35 7.01 -2.39 -0.02 2.34 16 33 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.07 2.58 8.01 -2.39 -0.02 2.56 16 35 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.04 1.91 8.03 -2.39 -0.02 1.89 16 37 H 0.03 2.01 7.64 -2.39 -0.02 1.99 16 Total: -1.00 -72.42 306.26 5.08 -67.34 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: 1.07 Total: 12.24 kcal Atomic # 6 Polarization: -11.82 SS G_CDS: 4.44 Total: -7.38 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -2.44 Total: -84.12 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -0.01 Total: -33.47 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -72.42 5.08 -67.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397593707.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.597 kcal (2) G-P(sol) polarization free energy of solvation -72.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds