Wall clock time and date at job start Mon Mar 30 2020 06:20:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.50701 * 109.47051 * 2 1
4 4 O 1.33645 * 125.80391 * 270.00000 * 3 2 1
5 5 C 1.34217 * 110.91082 * 180.02562 * 4 3 2
6 6 C 1.34176 * 109.12237 * 0.02562 * 5 4 3
7 7 C 1.36420 * 125.79606 * 90.00569 * 3 2 1
8 8 C 1.47377 * 127.19579 * 0.25552 * 7 3 2
9 9 O 1.21613 * 119.99747 * 359.71373 * 8 7 3
10 10 N 1.34771 * 119.99940 * 179.70882 * 8 7 3
11 11 C 1.47018 * 125.65223 * 0.02729 * 10 8 7
12 12 C 1.54319 * 107.27546 * 181.02248 * 11 10 8
13 13 C 1.55163 * 102.94258 * 22.19247 * 12 11 10
14 14 H 1.09002 * 111.00124 * 82.60694 * 13 12 11
15 15 C 1.50698 * 111.00801 * 206.42529 * 13 12 11
16 16 H 1.08003 * 119.99695 * 0.02562 * 15 13 12
17 17 C 1.37867 * 120.00183 * 179.97438 * 15 13 12
18 18 N 1.31521 * 120.00137 * 0.02562 * 17 15 13
19 19 Si 1.86800 * 120.00077 * 179.97438 * 17 15 13
20 20 H 1.48498 * 109.46980 * 60.00234 * 19 17 15
21 21 H 1.48502 * 109.47359 * 180.02562 * 19 17 15
22 22 H 1.48500 * 109.47469 * 300.00248 * 19 17 15
23 23 C 1.47427 * 125.64476 * 179.71800 * 10 8 7
24 24 H 1.09000 * 109.46730 * 299.99909 * 1 2 3
25 25 H 1.09000 * 109.47032 * 59.99250 * 1 2 3
26 26 H 1.08994 * 109.47449 * 179.97438 * 1 2 3
27 27 H 1.09000 * 109.46730 * 240.00091 * 2 1 3
28 28 H 1.09000 * 109.47032 * 120.00750 * 2 1 3
29 29 H 1.07996 * 125.43832 * 180.02562 * 5 4 3
30 30 H 1.07993 * 127.02556 * 180.02562 * 6 5 4
31 31 H 1.09000 * 109.88254 * 300.44031 * 11 10 8
32 32 H 1.08998 * 109.88074 * 61.44486 * 11 10 8
33 33 H 1.08998 * 110.72546 * 140.55568 * 12 11 10
34 34 H 1.08998 * 110.72326 * 263.83068 * 12 11 10
35 35 H 0.97000 * 119.99784 * 179.97438 * 18 17 15
36 36 H 1.08994 * 110.37129 * 274.74657 * 23 10 8
37 37 H 1.08999 * 110.36725 * 37.07387 * 23 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0324 1.4208 0.0000
4 8 2.2930 2.1580 -1.0839
5 6 2.7258 3.3807 -0.7389
6 6 2.7597 3.4737 0.5992
7 6 2.2984 2.1731 1.1065
8 6 2.1598 1.7649 2.5158
9 8 1.7646 0.6477 2.7892
10 7 2.4711 2.6296 3.5016
11 6 2.9576 4.0042 3.3137
12 6 3.2031 4.5991 4.7163
13 6 3.3803 3.3379 5.6026
14 1 4.3999 2.9574 5.5413
15 6 2.9986 3.6241 7.0320
16 1 2.6560 4.6092 7.3125
17 6 3.0857 2.6283 7.9815
18 7 3.5023 1.4285 7.6398
19 14 2.6132 2.9833 9.7535
20 1 1.1920 3.4103 9.8108
21 1 2.7951 1.7562 10.5698
22 1 3.4772 4.0659 10.2889
23 6 2.3741 2.3558 4.9469
24 1 -0.3633 0.5138 0.8900
25 1 -0.3633 0.5140 -0.8899
26 1 -0.3634 -1.0276 -0.0005
27 1 1.8933 -0.5138 -0.8900
28 1 1.8934 -0.5140 0.8899
29 1 3.0027 4.1645 -1.4283
30 1 3.0625 4.3295 1.1841
31 1 3.8888 3.9937 2.7473
32 1 2.2087 4.5933 2.7845
33 1 4.1081 5.2065 4.7246
34 1 2.3427 5.1827 5.0437
35 1 3.5639 0.7280 8.3079
36 1 1.3628 2.5514 5.3031
37 1 2.6587 1.3250 5.1577
RHF calculation, no. of doubly occupied orbitals= 49
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000397593707.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 06:20:02
Heat of formation + Delta-G solvation = -45.742817 kcal
Electronic energy + Delta-G solvation = -19928.045639 eV
Core-core repulsion = 16863.981359 eV
Total energy + Delta-G solvation = -3064.064280 eV
No. of doubly occupied orbitals = 49
Molecular weight
(most abundant/longest-lived isotopes) = 263.131 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-43.55027 -40.70704 -38.37481 -35.08819 -34.96750 -33.79580 -32.17837 -29.85620
-29.77014 -27.22185 -25.31472 -24.27695 -22.93040 -22.23773 -21.34864 -19.74688
-18.62920 -18.36317 -17.30711 -17.13387 -16.82760 -16.40938 -16.22915 -15.33582
-15.29450 -14.96857 -14.38600 -14.30833 -14.09469 -13.65279 -13.53108 -13.44912
-13.24878 -13.09778 -12.77562 -12.51985 -12.45335 -12.23087 -11.97119 -11.62599
-11.16261 -11.08764 -10.93554 -10.79106 -10.58527 -9.72581 -9.37765 -8.18066
-6.30726 0.33510 1.16809 1.43086 1.44766 1.52606 1.82463 2.19149
2.32677 2.42930 3.14700 3.58818 3.65613 3.91169 3.95243 4.14213
4.26205 4.29041 4.36597 4.43733 4.53483 4.61130 4.68687 4.80124
4.92483 4.96891 5.01232 5.10198 5.11832 5.18421 5.26370 5.34298
5.41862 5.50627 5.66138 5.83976 6.07308 6.25156 6.67645 6.82418
7.18297 7.39723 8.91320
Molecular weight = 263.13amu
Principal moments of inertia in cm(-1)
A = 0.032492 B = 0.004881 C = 0.004388
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 861.542287 B = 5734.868982 C = 6379.527222
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C -0.052 4.052
3 C 0.070 3.930
4 O -0.175 6.175
5 C -0.023 4.023
6 C -0.211 4.211
7 C -0.262 4.262
8 C 0.581 3.419
9 O -0.591 6.591
10 N -0.613 5.613
11 C 0.102 3.898
12 C -0.120 4.120
13 C 0.038 3.962
14 H 0.011 0.989
15 C -0.530 4.530
16 H 0.069 0.931
17 C 0.010 3.990
18 N -0.924 5.924
19 Si 0.961 3.039
20 H -0.269 1.269
21 H -0.290 1.290
22 H -0.264 1.264
23 C 0.134 3.866
24 H 0.033 0.967
25 H 0.071 0.929
26 H 0.083 0.917
27 H 0.109 0.891
28 H 0.085 0.915
29 H 0.257 0.743
30 H 0.182 0.818
31 H 0.083 0.917
32 H 0.089 0.911
33 H 0.090 0.910
34 H 0.073 0.927
35 H 0.262 0.738
36 H 0.035 0.965
37 H 0.033 0.967
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.027 5.730 -18.067 19.063
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C -0.089 4.089
3 C 0.016 3.984
4 O -0.071 6.071
5 C -0.088 4.088
6 C -0.230 4.230
7 C -0.267 4.267
8 C 0.373 3.627
9 O -0.475 6.475
10 N -0.345 5.345
11 C -0.019 4.019
12 C -0.158 4.158
13 C 0.019 3.981
14 H 0.029 0.971
15 C -0.568 4.568
16 H 0.088 0.912
17 C -0.189 4.189
18 N -0.562 5.562
19 Si 0.786 3.214
20 H -0.194 1.194
21 H -0.215 1.215
22 H -0.188 1.188
23 C 0.011 3.989
24 H 0.052 0.948
25 H 0.090 0.910
26 H 0.102 0.898
27 H 0.127 0.873
28 H 0.104 0.896
29 H 0.273 0.727
30 H 0.199 0.801
31 H 0.101 0.899
32 H 0.107 0.893
33 H 0.109 0.891
34 H 0.091 0.909
35 H 0.071 0.929
36 H 0.054 0.946
37 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -2.238 4.866 -18.195 18.967
hybrid contribution -0.075 -0.261 1.681 1.703
sum -2.313 4.605 -16.514 17.299
Atomic orbital electron populations
1.21638 0.92703 1.03424 1.01579 1.20384 0.97565 0.86033 1.04948
1.22969 0.97324 0.94934 0.83133 1.83764 1.65209 1.23956 1.34135
1.24788 1.01728 0.85808 0.96470 1.23610 1.06211 0.97559 0.95603
1.21183 1.15030 0.98263 0.92192 1.17512 0.77051 0.83474 0.84648
1.90683 1.50205 1.21883 1.84752 1.48690 1.63893 1.15165 1.06725
1.22510 0.99624 0.81122 0.98693 1.22712 1.02592 0.97719 0.92756
1.19793 0.93202 0.91441 0.93655 0.97095 1.21372 1.44815 0.97459
0.93173 0.91240 1.25918 0.94690 0.94824 1.03480 1.70111 1.47271
1.03198 1.35653 0.85565 0.79115 0.77509 0.79239 1.19435 1.21538
1.18822 1.22286 0.99036 1.00240 0.77302 0.94803 0.91018 0.89801
0.87307 0.89618 0.72695 0.80081 0.89934 0.89312 0.89143 0.90873
0.92943 0.94625 0.94823
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -3.22 9.90 71.98 0.71 -2.50 16
2 C -0.05 -1.37 5.94 29.85 0.18 -1.19 16
3 C 0.07 2.01 6.63 25.26 0.17 2.18 16
4 O -0.17 -4.05 10.52 4.52 0.05 -4.00 16
5 C -0.02 -0.41 12.03 66.89 0.80 0.39 16
6 C -0.21 -5.03 9.42 23.65 0.22 -4.81 16
7 C -0.26 -8.73 6.25 -18.99 -0.12 -8.84 16
8 C 0.58 25.04 7.84 86.65 0.68 25.72 16
9 O -0.59 -29.41 15.10 -4.07 -0.06 -29.47 16
10 N -0.61 -26.34 3.32 -815.29 -2.71 -29.05 16
11 C 0.10 3.31 5.00 86.73 0.43 3.75 16
12 C -0.12 -4.37 6.39 31.78 0.20 -4.17 16
13 C 0.04 1.91 2.86 -10.07 -0.03 1.88 16
14 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16
15 C -0.53 -28.44 8.49 25.60 0.22 -28.22 16
16 H 0.07 3.52 7.76 -2.91 -0.02 3.50 16
17 C 0.01 0.57 5.37 84.65 0.45 1.03 16
18 N -0.92 -55.34 12.55 21.44 0.27 -55.08 16
19 Si 0.96 43.37 29.54 68.60 2.03 45.39 16
20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16
21 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16
22 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16
23 C 0.13 6.90 5.90 86.93 0.51 7.41 16
24 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16
25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16
26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16
27 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16
28 H 0.09 2.77 6.48 -2.39 -0.02 2.75 16
29 H 0.26 1.67 8.06 -2.91 -0.02 1.65 16
30 H 0.18 3.57 4.87 -2.91 -0.01 3.55 16
31 H 0.08 2.32 6.86 -2.39 -0.02 2.30 16
32 H 0.09 2.35 7.01 -2.39 -0.02 2.34 16
33 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16
34 H 0.07 2.58 8.01 -2.39 -0.02 2.56 16
35 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16
36 H 0.04 1.91 8.03 -2.39 -0.02 1.89 16
37 H 0.03 2.01 7.64 -2.39 -0.02 1.99 16
Total: -1.00 -72.42 306.26 5.08 -67.34
By element:
Atomic # 1 Polarization: 11.17 SS G_CDS: 1.07 Total: 12.24 kcal
Atomic # 6 Polarization: -11.82 SS G_CDS: 4.44 Total: -7.38 kcal
Atomic # 7 Polarization: -81.68 SS G_CDS: -2.44 Total: -84.12 kcal
Atomic # 8 Polarization: -33.45 SS G_CDS: -0.01 Total: -33.47 kcal
Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal
Total: -72.42 5.08 -67.34 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000397593707.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 21.597 kcal
(2) G-P(sol) polarization free energy of solvation -72.418 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.821 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.078 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.340 kcal
(6) G-S(sol) free energy of system = (1) + (5) -45.743 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds