Wall clock time and date at job start Mon Mar 30 2020 06:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50704 * 109.46761 * 2 1 4 4 C 1.35137 * 125.61344 * 90.00491 * 3 2 1 5 5 C 1.40362 * 107.11158 * 179.97438 * 4 3 2 6 6 C 1.36545 * 106.71078 * 0.02562 * 5 4 3 7 7 C 1.46653 * 125.99082 * 179.97438 * 6 5 4 8 8 O 1.21694 * 120.00054 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00319 * 179.97438 * 7 6 5 10 10 C 1.47023 * 125.64732 * 359.96579 * 9 7 6 11 11 C 1.54428 * 107.28154 * 181.09073 * 10 9 7 12 12 C 1.55156 * 102.89529 * 22.18672 * 11 10 9 13 13 H 1.09002 * 111.00677 * 82.59320 * 12 11 10 14 14 C 1.50701 * 111.00325 * 206.40729 * 12 11 10 15 15 H 1.08001 * 120.00229 * 356.81931 * 14 12 11 16 16 C 1.37878 * 119.99769 * 176.81941 * 14 12 11 17 17 N 1.31517 * 120.00257 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 119.99994 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47112 * 89.99536 * 18 16 14 20 20 H 1.48495 * 109.47002 * 209.99713 * 18 16 14 21 21 H 1.48504 * 109.46760 * 329.99753 * 18 16 14 22 22 C 1.47430 * 125.65373 * 179.97438 * 9 7 6 23 23 O 1.33922 * 125.61603 * 270.23682 * 3 2 1 24 24 H 1.09000 * 109.46957 * 299.99515 * 1 2 3 25 25 H 1.08996 * 109.46978 * 59.99862 * 1 2 3 26 26 H 1.09001 * 109.47167 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46933 * 240.00027 * 2 1 3 28 28 H 1.08997 * 109.47108 * 119.99601 * 2 1 3 29 29 H 1.07993 * 126.44282 * 359.96924 * 4 3 2 30 30 H 1.08001 * 126.64868 * 179.97438 * 5 4 3 31 31 H 1.08996 * 109.87999 * 300.50393 * 10 9 7 32 32 H 1.08994 * 109.88372 * 61.51923 * 10 9 7 33 33 H 1.09001 * 110.72431 * 263.84058 * 11 10 9 34 34 H 1.09002 * 110.76272 * 140.53699 * 11 10 9 35 35 H 0.96992 * 120.00088 * 180.02562 * 17 16 14 36 36 H 1.09008 * 110.36125 * 37.00141 * 22 9 7 37 37 H 1.09000 * 110.45875 * 274.73373 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2946 2.1628 1.0986 5 6 2.7388 3.4176 0.6532 6 6 2.7242 3.3774 -0.7116 7 6 3.1104 4.4703 -1.6101 8 8 3.4864 5.5323 -1.1499 9 7 3.0497 4.2983 -2.9454 10 6 2.6175 3.0725 -3.6326 11 6 2.7383 3.3306 -5.1504 12 6 3.7675 4.4895 -5.2237 13 1 4.7877 4.1102 -5.1656 14 6 3.5694 5.3096 -6.4724 15 1 2.8207 5.0206 -7.1952 16 6 4.3439 6.4289 -6.6921 17 7 5.2552 6.7811 -5.8117 18 14 4.0979 7.4459 -8.2396 19 1 3.0857 8.5016 -7.9824 20 1 5.3849 8.0778 -8.6264 21 1 3.6276 6.5667 -9.3401 22 6 3.4059 5.3079 -3.9590 23 8 2.2880 2.1577 -1.0887 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.1834 1.8492 2.1260 30 1 3.0340 4.2533 1.2703 31 1 3.2606 2.2405 -3.3459 32 1 1.5829 2.8475 -3.3739 33 1 1.7794 3.6394 -5.5667 34 1 3.1161 2.4465 -5.6639 35 1 5.7998 7.5688 -5.9661 36 1 4.2642 5.8922 -3.6270 37 1 2.5574 5.9620 -4.1597 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397602737.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:20:07 Heat of formation + Delta-G solvation = -50.181380 kcal Electronic energy + Delta-G solvation = -19718.407280 eV Core-core repulsion = 16654.150530 eV Total energy + Delta-G solvation = -3064.256751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.73824 -40.79037 -38.50272 -35.25929 -34.90128 -33.87625 -32.54905 -30.21314 -29.61186 -27.12234 -25.33786 -24.03796 -22.88676 -21.78222 -21.61613 -20.78636 -18.76367 -18.52881 -17.54745 -17.12494 -16.78211 -16.40804 -16.10383 -15.35217 -15.18066 -14.58729 -14.33389 -14.18077 -14.01987 -13.95091 -13.68820 -13.60215 -13.23152 -13.21309 -12.82270 -12.51915 -12.41978 -12.33447 -11.88435 -11.66141 -11.44607 -11.18333 -11.06163 -11.04676 -10.61185 -9.82824 -9.41553 -8.18603 -6.31542 -0.01248 1.34089 1.43083 1.44240 1.54134 1.55407 2.06773 2.10470 2.42560 3.14068 3.42658 3.78627 3.90165 3.94350 4.21076 4.25767 4.32180 4.37627 4.50963 4.55544 4.58404 4.68250 4.85209 4.92285 4.96579 5.05960 5.06121 5.08057 5.14331 5.24667 5.36797 5.44183 5.48249 5.64159 5.82239 5.92813 6.22755 6.47874 6.79690 6.91773 7.38983 8.90772 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.036357 B = 0.004511 C = 0.004120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.950555 B = 6205.227773 C = 6794.629937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.045 4.045 3 C 0.023 3.977 4 C -0.221 4.221 5 C -0.121 4.121 6 C -0.102 4.102 7 C 0.595 3.405 8 O -0.578 6.578 9 N -0.611 5.611 10 C 0.110 3.890 11 C -0.116 4.116 12 C 0.039 3.961 13 H 0.012 0.988 14 C -0.530 4.530 15 H 0.071 0.929 16 C 0.011 3.989 17 N -0.923 5.923 18 Si 0.962 3.038 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.259 1.259 22 C 0.132 3.868 23 O -0.164 6.164 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.089 0.911 27 H 0.092 0.908 28 H 0.125 0.875 29 H 0.189 0.811 30 H 0.159 0.841 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.262 0.738 36 H 0.041 0.959 37 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.439 -16.277 11.343 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.082 4.082 3 C -0.029 4.029 4 C -0.239 4.239 5 C -0.142 4.142 6 C -0.153 4.153 7 C 0.386 3.614 8 O -0.461 6.461 9 N -0.341 5.341 10 C -0.011 4.011 11 C -0.153 4.153 12 C 0.019 3.981 13 H 0.030 0.970 14 C -0.568 4.568 15 H 0.089 0.911 16 C -0.189 4.189 17 N -0.561 5.561 18 Si 0.788 3.212 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.183 1.183 22 C 0.010 3.990 23 O -0.060 6.060 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.111 0.889 28 H 0.143 0.857 29 H 0.206 0.794 30 H 0.177 0.823 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -9.147 -15.685 11.334 21.404 hybrid contribution 0.460 1.442 -0.551 1.611 sum -8.687 -14.243 10.783 19.865 Atomic orbital electron populations 1.21799 0.92923 1.03720 1.02220 1.20457 0.96993 0.84463 1.06276 1.23807 0.99263 0.96252 0.83624 1.21888 1.07968 0.92707 1.01345 1.22186 0.99640 1.00182 0.92145 1.21607 1.13288 0.85964 0.94483 1.16742 0.78242 0.85636 0.80822 1.90802 1.51255 1.27755 1.76309 1.48875 1.63198 1.17387 1.04639 1.22199 1.00156 0.85572 0.93211 1.22698 1.00343 0.99380 0.92927 1.19780 0.94113 0.92484 0.91703 0.96988 1.21380 1.19832 1.10365 1.05242 0.91087 1.25922 0.94459 0.98807 0.99699 1.70105 1.22750 1.26264 1.36985 0.85482 0.77313 0.78755 0.79697 1.20340 1.21253 1.18273 1.22354 0.97644 0.90990 0.87982 1.84093 1.64516 1.21506 1.35864 0.91950 0.93614 0.89237 0.88937 0.85676 0.79365 0.82310 0.90743 0.90134 0.90622 0.89062 0.92879 0.94033 0.94061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.89 71.98 0.71 -0.84 16 2 C -0.05 -0.52 6.47 29.85 0.19 -0.33 16 3 C 0.02 0.49 6.57 24.97 0.16 0.65 16 4 C -0.22 -4.63 10.77 22.07 0.24 -4.39 16 5 C -0.12 -3.53 10.62 22.39 0.24 -3.30 16 6 C -0.10 -3.59 6.95 24.07 0.17 -3.42 16 7 C 0.60 26.54 7.82 86.44 0.68 27.22 16 8 O -0.58 -29.88 17.12 -4.33 -0.07 -29.96 16 9 N -0.61 -27.14 3.33 -816.27 -2.72 -29.86 16 10 C 0.11 3.91 5.55 86.76 0.48 4.39 16 11 C -0.12 -4.37 6.40 31.82 0.20 -4.17 16 12 C 0.04 1.93 2.91 -10.14 -0.03 1.90 16 13 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 14 C -0.53 -28.42 8.52 25.60 0.22 -28.20 16 15 H 0.07 3.60 7.78 -2.91 -0.02 3.58 16 16 C 0.01 0.59 5.35 84.65 0.45 1.04 16 17 N -0.92 -54.96 12.29 21.45 0.26 -54.69 16 18 Si 0.96 43.28 29.54 68.60 2.03 45.31 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 20 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 22 C 0.13 6.87 5.77 86.86 0.50 7.37 16 23 O -0.16 -4.77 8.27 -5.02 -0.04 -4.81 16 24 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.19 2.48 8.06 -2.91 -0.02 2.45 16 30 H 0.16 4.48 8.06 -2.91 -0.02 4.46 16 31 H 0.07 2.42 7.68 -2.39 -0.02 2.40 16 32 H 0.08 2.50 7.78 -2.39 -0.02 2.48 16 33 H 0.08 2.74 8.03 -2.39 -0.02 2.72 16 34 H 0.09 2.99 8.14 -2.39 -0.02 2.97 16 35 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.04 2.48 7.47 -2.38 -0.02 2.46 16 37 H 0.04 2.22 8.03 -2.39 -0.02 2.20 16 Total: -1.00 -70.74 313.64 4.73 -66.01 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 1.05 Total: 10.07 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 4.22 Total: -2.07 kcal Atomic # 7 Polarization: -82.10 SS G_CDS: -2.45 Total: -84.55 kcal Atomic # 8 Polarization: -34.65 SS G_CDS: -0.12 Total: -34.77 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -70.74 4.73 -66.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397602737.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.831 kcal (2) G-P(sol) polarization free energy of solvation -70.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds