Wall clock time and date at job start Mon Mar 30 2020 06:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 119.99744 * 2 1 4 4 C 1.50704 * 120.00030 * 180.02562 * 2 1 3 5 5 O 1.42893 * 109.46951 * 359.97438 * 4 2 1 6 6 N 1.46303 * 113.99704 * 179.97438 * 5 4 2 7 7 C 1.46901 * 111.00014 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.46941 * 180.02562 * 7 6 5 9 9 C 1.38305 * 119.93408 * 89.99969 * 8 7 6 10 10 C 1.38101 * 120.07071 * 179.97438 * 9 8 7 11 11 C 1.38876 * 119.92956 * 0.02562 * 10 9 8 12 12 O 1.35750 * 120.06861 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00075 * 5.53840 * 12 11 10 14 14 H 1.08003 * 120.00029 * 354.94359 * 13 12 11 15 15 C 1.38659 * 120.00122 * 174.94542 * 13 12 11 16 16 N 1.31558 * 119.99705 * 180.02562 * 15 13 12 17 17 Si 1.86795 * 120.00035 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.47181 * 89.99980 * 17 15 13 19 19 H 1.48498 * 109.47260 * 210.00361 * 17 15 13 20 20 H 1.48502 * 109.47130 * 330.00179 * 17 15 13 21 21 C 1.38880 * 119.86555 * 0.27954 * 11 10 9 22 22 C 1.38102 * 119.92551 * 359.44514 * 21 11 10 23 23 H 1.08001 * 120.00484 * 359.97438 * 1 2 3 24 24 H 1.08005 * 119.99907 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46821 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.47245 * 300.00100 * 3 2 1 27 27 H 1.08994 * 109.47350 * 60.00189 * 3 2 1 28 28 H 1.09003 * 109.46764 * 239.99382 * 4 2 1 29 29 H 1.08998 * 109.47123 * 120.00127 * 4 2 1 30 30 H 1.00905 * 110.99619 * 56.04848 * 6 5 4 31 31 H 1.08986 * 109.47081 * 60.00115 * 7 6 5 32 32 H 1.09005 * 109.47052 * 299.99924 * 7 6 5 33 33 H 1.07999 * 119.96326 * 0.02562 * 9 8 7 34 34 H 1.07997 * 120.03156 * 180.02562 * 10 9 8 35 35 H 0.96997 * 119.99350 * 179.97438 * 16 15 13 36 36 H 1.07996 * 120.04097 * 179.72435 * 21 11 10 37 37 H 1.07997 * 119.96688 * 180.27743 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 2.0635 -1.3051 -0.0006 5 8 1.1349 -2.3912 -0.0005 6 7 1.7641 -3.7120 -0.0016 7 6 0.7524 -4.7771 -0.0020 8 6 1.4367 -6.1198 -0.0026 9 6 1.7500 -6.7352 1.1957 10 6 2.3766 -7.9659 1.1985 11 6 2.6925 -8.5853 -0.0036 12 8 3.3079 -9.7953 -0.0041 13 6 3.4816 -10.3942 1.1913 14 1 3.2114 -9.8758 2.0994 15 6 4.0072 -11.6758 1.2548 16 7 4.1762 -12.2603 2.4212 17 14 4.4739 -12.5728 -0.3158 18 1 5.8895 -12.2768 -0.6530 19 1 4.3073 -14.0352 -0.1189 20 1 3.5958 -12.1195 -1.4244 21 6 2.3823 -7.9620 -1.2053 22 6 1.7506 -6.7339 -1.2014 23 1 -0.5401 0.9353 0.0004 24 1 -0.5400 -0.9354 0.0004 25 1 3.1351 1.1060 -0.0005 26 1 1.8001 1.8767 -0.8900 27 1 1.8001 1.8767 0.8899 28 1 2.6902 -1.3632 0.8894 29 1 2.6902 -1.3625 -0.8906 30 1 2.3952 -3.8125 0.7793 31 1 0.1294 -4.6861 -0.8916 32 1 0.1299 -4.6873 0.8883 33 1 1.5037 -6.2531 2.1303 34 1 2.6206 -8.4460 2.1346 35 1 4.5435 -13.1569 2.4656 36 1 2.6307 -8.4391 -2.1417 37 1 1.5050 -6.2507 -2.1354 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400920786.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:55 Heat of formation + Delta-G solvation = -2.783243 kcal Electronic energy + Delta-G solvation = -18388.372548 eV Core-core repulsion = 15326.171134 eV Total energy + Delta-G solvation = -3062.201413 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.94931 -38.93681 -38.33611 -36.01068 -34.55237 -33.75080 -31.85942 -30.23294 -28.04681 -27.51399 -26.84910 -25.07905 -23.70548 -21.96958 -19.87137 -19.47180 -19.12196 -18.18645 -16.96173 -16.63897 -16.49060 -16.07727 -15.79779 -15.64090 -15.27104 -15.16002 -14.83463 -14.42489 -14.20524 -14.05148 -13.93904 -13.60185 -13.17310 -13.04337 -12.60986 -12.53239 -12.43502 -12.26261 -11.98299 -11.92427 -11.65351 -11.30040 -10.92431 -9.94604 -9.84648 -9.68332 -9.06488 -8.51405 -6.24362 0.47207 0.54281 1.29162 1.32063 1.35612 1.51858 1.69246 2.27412 2.75802 3.01407 3.15836 3.82680 3.91154 3.99088 4.06079 4.14387 4.35044 4.37470 4.40637 4.53724 4.56460 4.67835 4.75208 4.80121 4.88484 4.95586 5.09752 5.14923 5.21266 5.33095 5.48865 5.54717 5.67008 5.70931 5.77404 5.87469 5.90990 6.19223 6.30934 6.82740 7.56005 8.59950 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.050761 B = 0.002924 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.467030 B = 9572.752706 C = 9689.734683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.141 4.141 3 C -0.111 4.111 4 C 0.090 3.910 5 O -0.267 6.267 6 N -0.505 5.505 7 C 0.115 3.885 8 C -0.155 4.155 9 C -0.060 4.060 10 C -0.237 4.237 11 C 0.127 3.873 12 O -0.242 6.242 13 C -0.400 4.400 14 H 0.083 0.917 15 C 0.010 3.990 16 N -0.922 5.922 17 Si 0.971 3.029 18 H -0.265 1.265 19 H -0.268 1.268 20 H -0.262 1.262 21 C -0.192 4.192 22 C -0.042 4.042 23 H 0.113 0.887 24 H 0.090 0.910 25 H 0.070 0.930 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.339 0.661 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.135 0.865 34 H 0.111 0.889 35 H 0.285 0.715 36 H 0.131 0.869 37 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.344 22.296 -6.065 23.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.143 4.143 3 C -0.168 4.168 4 C 0.013 3.987 5 O -0.276 6.276 6 N -0.176 5.176 7 C -0.014 4.014 8 C -0.157 4.157 9 C -0.078 4.078 10 C -0.256 4.256 11 C 0.077 3.923 12 O -0.150 6.150 13 C -0.477 4.477 14 H 0.100 0.900 15 C -0.188 4.188 16 N -0.563 5.563 17 Si 0.793 3.207 18 H -0.190 1.190 19 H -0.193 1.193 20 H -0.186 1.186 21 C -0.211 4.211 22 C -0.061 4.061 23 H 0.131 0.869 24 H 0.109 0.891 25 H 0.089 0.911 26 H 0.096 0.904 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.156 0.844 31 H 0.114 0.886 32 H 0.071 0.929 33 H 0.153 0.847 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.149 0.851 37 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.332 22.015 -6.814 23.654 hybrid contribution 0.233 -0.928 1.205 1.539 sum -5.099 21.087 -5.609 22.408 Atomic orbital electron populations 1.23731 0.95735 1.02222 1.00793 1.21860 0.96001 0.94700 1.01708 1.20780 1.00193 0.92649 1.03163 1.21336 0.91974 0.84001 1.01408 1.90678 1.29270 1.10321 1.97286 1.66827 1.14286 0.89521 1.46944 1.20708 0.92819 0.84887 1.02937 1.19290 1.06872 0.96611 0.92923 1.20938 0.95303 0.93177 0.98413 1.21247 1.08042 0.98784 0.97574 1.19723 0.91684 0.85603 0.95258 1.83520 1.69354 1.29542 1.32544 1.20720 1.44022 0.99815 0.83094 0.89996 1.25295 0.96054 0.96123 1.01376 1.69728 1.44949 1.15986 1.25590 0.85212 0.79395 0.77469 0.78637 1.19042 1.19289 1.18595 1.20529 1.07038 0.98178 0.95400 1.20932 0.94206 0.92339 0.98585 0.86902 0.89115 0.91125 0.90371 0.90399 0.91562 0.91322 0.84450 0.88627 0.92939 0.84705 0.87163 0.90531 0.85093 0.82964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 13.71 67.78 0.93 -2.33 16 2 C -0.14 -2.34 6.05 -16.48 -0.10 -2.44 16 3 C -0.11 -1.21 10.05 71.24 0.72 -0.49 16 4 C 0.09 1.69 6.72 71.24 0.48 2.17 16 5 O -0.27 -6.34 9.68 -50.17 -0.49 -6.83 16 6 N -0.50 -11.95 7.32 -190.01 -1.39 -13.34 16 7 C 0.11 2.73 6.35 85.56 0.54 3.27 16 8 C -0.16 -4.52 5.40 -19.83 -0.11 -4.62 16 9 C -0.06 -1.97 9.69 22.25 0.22 -1.76 16 10 C -0.24 -10.12 9.17 22.39 0.21 -9.92 16 11 C 0.13 5.81 6.65 22.58 0.15 5.96 16 12 O -0.24 -13.00 8.59 -22.72 -0.20 -13.20 16 13 C -0.40 -23.36 9.95 67.92 0.68 -22.68 16 14 H 0.08 5.00 5.44 -2.91 -0.02 4.98 16 15 C 0.01 0.58 5.49 84.83 0.47 1.05 16 16 N -0.92 -54.74 13.96 21.61 0.30 -54.44 16 17 Si 0.97 45.05 28.62 68.60 1.96 47.01 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 20 H -0.26 -12.09 7.11 99.48 0.71 -11.39 16 21 C -0.19 -7.16 9.99 22.39 0.22 -6.94 16 22 C -0.04 -1.27 9.69 22.25 0.22 -1.05 16 23 H 0.11 1.51 8.05 -2.91 -0.02 1.48 16 24 H 0.09 1.87 6.84 -2.91 -0.02 1.85 16 25 H 0.07 0.67 8.00 -2.39 -0.02 0.65 16 26 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.34 7.51 8.91 -89.69 -0.80 6.71 16 31 H 0.10 2.14 8.08 -2.39 -0.02 2.12 16 32 H 0.05 1.19 8.08 -2.38 -0.02 1.17 16 33 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 34 H 0.11 5.19 5.64 -2.91 -0.02 5.18 16 35 H 0.29 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 37 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -64.79 322.48 5.08 -59.71 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: 0.27 Total: 20.86 kcal Atomic # 6 Polarization: -44.39 SS G_CDS: 4.61 Total: -39.78 kcal Atomic # 7 Polarization: -66.69 SS G_CDS: -1.09 Total: -67.78 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.68 Total: -20.03 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.96 Total: 47.01 kcal Total: -64.79 5.08 -59.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400920786.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.926 kcal (2) G-P(sol) polarization free energy of solvation -64.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds