Wall clock time and date at job start Mon Mar 30 2020 06:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50699 * 119.99980 * 2 1 4 4 H 1.09006 * 109.47368 * 0.02562 * 3 2 1 5 5 C 1.52999 * 109.47071 * 120.00195 * 3 2 1 6 6 O 1.42904 * 109.47464 * 240.00240 * 3 2 1 7 7 N 1.46296 * 114.00041 * 155.00173 * 6 3 2 8 8 C 1.46904 * 111.00151 * 180.02562 * 7 6 3 9 9 C 1.50692 * 109.47185 * 179.97438 * 8 7 6 10 10 C 1.38320 * 119.96784 * 269.71867 * 9 8 7 11 11 C 1.38281 * 120.14074 * 179.76841 * 10 9 8 12 12 C 1.38124 * 120.06706 * 0.51220 * 11 10 9 13 13 C 1.38855 * 119.92847 * 359.74817 * 12 11 10 14 14 O 1.35756 * 120.06607 * 179.97438 * 13 12 11 15 15 C 1.34830 * 116.99928 * 354.48590 * 14 13 12 16 16 H 1.07998 * 120.00091 * 5.06303 * 15 14 13 17 17 C 1.38655 * 119.99722 * 185.05612 * 15 14 13 18 18 N 1.31553 * 120.00160 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99772 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47234 * 60.00280 * 19 17 15 21 21 H 1.48503 * 109.47120 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47288 * 300.00364 * 19 17 15 23 23 C 1.38078 * 119.96529 * 90.00259 * 9 8 7 24 24 H 1.08007 * 120.00352 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.00143 * 179.72301 * 1 2 3 26 26 H 1.07997 * 120.00361 * 180.02562 * 2 1 3 27 27 H 1.08998 * 109.47371 * 60.00337 * 5 3 2 28 28 H 1.09005 * 109.47367 * 180.02562 * 5 3 2 29 29 H 1.09005 * 109.47205 * 299.99839 * 5 3 2 30 30 H 1.00902 * 110.99817 * 303.94789 * 7 6 3 31 31 H 1.09000 * 109.46423 * 299.99833 * 8 7 6 32 32 H 1.08996 * 109.46953 * 59.99100 * 8 7 6 33 33 H 1.07998 * 119.93001 * 0.02562 * 10 9 8 34 34 H 1.07996 * 119.96554 * 180.25376 * 11 10 9 35 35 H 1.07997 * 120.03250 * 179.71812 * 12 11 10 36 36 H 0.96998 * 119.99937 * 180.02562 * 18 17 15 37 37 H 1.07997 * 120.03667 * 359.94975 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1337 0.0005 5 6 2.9431 1.3861 1.2492 6 8 2.8850 1.3809 -1.1668 7 7 3.1996 2.7470 -1.5853 8 6 4.0441 2.7480 -2.7874 9 6 4.3461 4.1690 -3.1878 10 6 3.5073 4.8329 -4.0647 11 6 3.7784 6.1385 -4.4309 12 6 4.8942 6.7803 -3.9298 13 6 5.7411 6.1148 -3.0535 14 8 6.8387 6.7427 -2.5598 15 6 7.1128 7.9698 -3.0467 16 1 6.4275 8.4435 -3.7339 17 6 8.2745 8.6235 -2.6649 18 7 9.1094 8.0463 -1.8281 19 14 8.6546 10.3232 -3.3401 20 1 7.5711 11.2626 -2.9546 21 1 9.9450 10.8006 -2.7812 22 1 8.7496 10.2579 -4.8206 23 6 5.4631 4.8051 -2.6835 24 1 -0.5401 0.9353 0.0004 25 1 -0.5400 -0.9353 -0.0045 26 1 1.8500 -0.9352 -0.0004 27 1 3.6514 0.5577 1.2492 28 1 3.4878 2.3303 1.2495 29 1 2.3164 1.3284 2.1393 30 1 2.3575 3.2823 -1.7350 31 1 4.9761 2.2235 -2.5769 32 1 3.5198 2.2454 -3.6001 33 1 2.6365 4.3319 -4.4611 34 1 3.1194 6.6555 -5.1125 35 1 5.1078 7.7984 -4.2197 36 1 9.9219 8.5038 -1.5607 37 1 6.1197 4.2851 -2.0018 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400924678.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:06 Heat of formation + Delta-G solvation = -2.800720 kcal Electronic energy + Delta-G solvation = -18642.782137 eV Core-core repulsion = 15580.579966 eV Total energy + Delta-G solvation = -3062.202171 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.82487 -38.91819 -38.31029 -35.64055 -34.31595 -33.71235 -31.34326 -30.68029 -29.85757 -27.40214 -25.66037 -23.97396 -23.27027 -22.31916 -20.83452 -19.55248 -18.81581 -18.11253 -16.91698 -16.68972 -16.55716 -16.26623 -16.06640 -15.50755 -15.05642 -14.90212 -14.65743 -14.45470 -14.14157 -13.82775 -13.62445 -13.33017 -13.04642 -12.96013 -12.66188 -12.50199 -12.39052 -12.25912 -12.14238 -11.72433 -11.44249 -11.19844 -10.79981 -10.49270 -9.83261 -9.56929 -9.01621 -8.46059 -6.15028 0.38814 0.71247 1.14511 1.35711 1.46509 1.52261 1.92611 2.18592 2.84138 3.16226 3.43127 3.83633 3.88905 4.04244 4.06552 4.18368 4.28050 4.33022 4.37610 4.47577 4.53991 4.61869 4.73921 4.86815 4.94115 5.04241 5.09266 5.12186 5.26607 5.29053 5.50736 5.63918 5.64347 5.70895 5.71719 5.79288 6.02618 6.18526 6.31803 6.98203 7.79208 8.77095 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.033097 B = 0.003419 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.792363 B = 8186.468550 C = 8746.106401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.169 4.169 3 C 0.109 3.891 4 H 0.074 0.926 5 C -0.164 4.164 6 O -0.259 6.259 7 N -0.507 5.507 8 C 0.106 3.894 9 C -0.040 4.040 10 C -0.178 4.178 11 C -0.069 4.069 12 C -0.238 4.238 13 C 0.112 3.888 14 O -0.233 6.233 15 C -0.415 4.415 16 H 0.104 0.896 17 C -0.024 4.024 18 N -0.922 5.922 19 Si 1.019 2.981 20 H -0.256 1.256 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.179 4.179 24 H 0.105 0.895 25 H 0.122 0.878 26 H 0.116 0.884 27 H 0.056 0.944 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.343 0.657 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.121 0.879 36 H 0.273 0.727 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.153 -10.784 -0.675 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.188 4.188 3 C 0.051 3.949 4 H 0.092 0.908 5 C -0.221 4.221 6 O -0.268 6.268 7 N -0.178 5.178 8 C -0.022 4.022 9 C -0.041 4.041 10 C -0.197 4.197 11 C -0.087 4.087 12 C -0.258 4.258 13 C 0.062 3.938 14 O -0.140 6.140 15 C -0.491 4.491 16 H 0.121 0.879 17 C -0.221 4.221 18 N -0.560 5.560 19 Si 0.838 3.162 20 H -0.181 1.181 21 H -0.197 1.197 22 H -0.181 1.181 23 C -0.198 4.198 24 H 0.123 0.877 25 H 0.140 0.860 26 H 0.134 0.866 27 H 0.075 0.925 28 H 0.069 0.931 29 H 0.095 0.905 30 H 0.159 0.841 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.167 0.833 34 H 0.168 0.832 35 H 0.139 0.861 36 H 0.082 0.918 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.185 -10.957 -0.060 19.545 hybrid contribution 0.075 0.718 -0.538 0.900 sum -16.110 -10.239 -0.598 19.098 Atomic orbital electron populations 1.24149 0.95055 1.03472 0.97010 1.22809 0.96162 0.97194 1.02630 1.21243 0.91730 0.96360 0.85556 0.90775 1.22177 1.00299 1.02155 0.97518 1.90763 1.72667 1.17289 1.46124 1.66779 1.19423 0.95744 1.35891 1.20798 0.98168 0.92522 0.90762 1.19190 0.93758 0.94528 0.96670 1.21010 1.01512 0.95296 1.01896 1.21149 0.95053 0.94734 0.97737 1.21366 0.98713 1.01770 1.03914 1.19868 0.88030 0.92705 0.93192 1.83952 1.39671 1.31357 1.59003 1.21806 1.07564 0.91128 1.28565 0.87921 1.26616 0.94186 1.04618 0.96692 1.70187 1.12031 1.40452 1.33330 0.84641 0.78323 0.74425 0.78780 1.18058 1.19748 1.18087 1.20207 1.01239 0.92638 1.05765 0.87671 0.86028 0.86621 0.92524 0.93068 0.90462 0.84055 0.90104 0.91072 0.83262 0.83197 0.86099 0.91849 0.87685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.05 14.32 67.79 0.97 -1.07 16 2 C -0.17 -2.87 9.15 25.65 0.23 -2.64 16 3 C 0.11 2.30 3.35 29.85 0.10 2.40 16 4 H 0.07 1.42 7.61 -2.38 -0.02 1.40 16 5 C -0.16 -3.51 9.54 71.98 0.69 -2.83 16 6 O -0.26 -6.94 10.91 -50.15 -0.55 -7.49 16 7 N -0.51 -13.89 7.31 -190.01 -1.39 -15.28 16 8 C 0.11 2.99 6.35 85.55 0.54 3.53 16 9 C -0.04 -1.36 5.39 -19.89 -0.11 -1.47 16 10 C -0.18 -5.24 9.70 22.30 0.22 -5.02 16 11 C -0.07 -2.24 10.04 22.25 0.22 -2.01 16 12 C -0.24 -10.17 9.17 22.39 0.21 -9.96 16 13 C 0.11 5.63 6.65 22.58 0.15 5.78 16 14 O -0.23 -14.21 9.76 -22.80 -0.22 -14.43 16 15 C -0.41 -24.25 9.49 67.92 0.64 -23.61 16 16 H 0.10 5.45 5.20 -2.91 -0.02 5.43 16 17 C -0.02 -1.36 5.49 84.83 0.47 -0.89 16 18 N -0.92 -57.24 13.67 21.61 0.30 -56.95 16 19 Si 1.02 42.88 29.55 68.60 2.03 44.90 16 20 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 23 C -0.18 -7.80 9.65 22.39 0.22 -7.58 16 24 H 0.11 1.18 7.83 -2.91 -0.02 1.16 16 25 H 0.12 1.11 8.06 -2.91 -0.02 1.09 16 26 H 0.12 1.91 8.06 -2.91 -0.02 1.89 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.34 8.09 8.79 -89.69 -0.79 7.30 16 31 H 0.08 2.44 8.08 -2.39 -0.02 2.42 16 32 H 0.07 1.69 8.08 -2.39 -0.02 1.67 16 33 H 0.15 3.18 8.06 -2.91 -0.02 3.15 16 34 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 35 H 0.12 5.22 5.64 -2.91 -0.02 5.20 16 36 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 37 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 Total: -1.00 -71.07 325.06 4.99 -66.08 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.28 Total: 28.54 kcal Atomic # 6 Polarization: -49.92 SS G_CDS: 4.55 Total: -45.37 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -1.09 Total: -72.23 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.77 Total: -21.92 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -71.07 4.99 -66.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400924678.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.279 kcal (2) G-P(sol) polarization free energy of solvation -71.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds