Wall clock time and date at job start Mon Mar 30 2020 06:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99989 * 2 1 4 4 H 1.09002 * 109.47081 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47511 * 240.00220 * 3 2 1 6 6 O 1.42901 * 109.46885 * 120.00026 * 3 2 1 7 7 N 1.46301 * 114.00293 * 205.00086 * 6 3 2 8 8 C 1.46903 * 111.00149 * 180.02562 * 7 6 3 9 9 C 1.50699 * 109.47107 * 180.02562 * 8 7 6 10 10 C 1.38328 * 119.96224 * 270.02211 * 9 8 7 11 11 C 1.38279 * 120.13490 * 179.97438 * 10 9 8 12 12 C 1.38120 * 120.06774 * 359.77134 * 11 10 9 13 13 C 1.38852 * 119.93464 * 0.50144 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.74702 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47063 * 60.00398 * 19 17 15 21 21 H 1.48498 * 109.47240 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47319 * 300.00306 * 19 17 15 23 23 C 1.38073 * 119.96539 * 89.99605 * 9 8 7 24 24 H 1.07997 * 120.00050 * 179.97438 * 1 2 3 25 25 H 1.08003 * 119.99792 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00288 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47220 * 179.97438 * 5 3 2 28 28 H 1.08994 * 109.47071 * 300.00250 * 5 3 2 29 29 H 1.09000 * 109.47230 * 60.00096 * 5 3 2 30 30 H 1.00893 * 110.99595 * 56.04786 * 7 6 3 31 31 H 1.09004 * 109.46952 * 59.99748 * 8 7 6 32 32 H 1.08998 * 109.46757 * 300.00364 * 8 7 6 33 33 H 1.08001 * 119.93314 * 359.97438 * 10 9 8 34 34 H 1.07999 * 119.96467 * 180.02562 * 11 10 9 35 35 H 1.08001 * 120.03298 * 180.27571 * 12 11 10 36 36 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 37 37 H 1.07996 * 120.03547 * 0.04988 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3863 -1.2492 6 8 2.8850 1.3808 1.1668 7 7 3.1997 2.7468 1.5855 8 6 4.0452 2.7476 2.7869 9 6 4.3473 4.1686 3.1876 10 6 5.4654 4.8064 2.6812 11 6 5.7457 6.1104 3.0461 12 6 4.9068 6.7817 3.9140 13 6 3.7866 6.1424 4.4284 14 8 2.9630 6.7978 5.2857 15 6 3.3520 8.0232 5.6918 16 1 4.2397 8.4742 5.2735 17 6 2.6123 8.7044 6.6465 18 7 1.5313 8.1548 7.1564 19 14 3.1517 10.4018 7.2097 20 1 3.1738 11.3253 6.0470 21 1 2.1992 10.9111 8.2288 22 1 4.5111 10.3183 7.8015 23 6 3.5073 4.8328 4.0592 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 3.4877 2.3305 -1.2494 28 1 3.6514 0.5579 -1.2493 29 1 2.3165 1.3286 -2.1392 30 1 2.3577 3.2821 1.7352 31 1 4.9772 2.2233 2.5756 32 1 3.5217 2.2447 3.5999 33 1 6.1209 4.2848 1.9995 34 1 6.6192 6.6059 2.6488 35 1 5.1238 7.8017 4.1951 36 1 1.0141 8.6312 7.8245 37 1 2.6347 4.3341 4.4545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400924684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:09 Heat of formation + Delta-G solvation = 15.424233 kcal Electronic energy + Delta-G solvation = -18644.053687 eV Core-core repulsion = 15582.641809 eV Total energy + Delta-G solvation = -3061.411878 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.13603 -37.78782 -36.75480 -34.55953 -32.67579 -32.25032 -30.06905 -29.35759 -28.53218 -25.46505 -24.28447 -23.12061 -21.63658 -20.76074 -20.01929 -17.78913 -17.26417 -16.79513 -15.76277 -15.50767 -15.10271 -14.58181 -14.41595 -14.09419 -13.85940 -13.63639 -13.50646 -13.14766 -12.63091 -12.46840 -12.25664 -12.14473 -11.80041 -11.62232 -11.31749 -11.02736 -10.82848 -10.75680 -10.69396 -10.47801 -10.44509 -9.77372 -9.39025 -8.86708 -8.62703 -8.14186 -7.28335 -6.47150 -4.06794 1.78298 2.03000 2.32553 2.99494 3.11924 3.13670 3.15619 3.94505 4.50676 4.65989 4.83793 4.97382 5.04828 5.11988 5.18193 5.22199 5.33487 5.51525 5.55940 5.70870 5.71904 5.88825 5.91229 5.97435 6.10957 6.13827 6.27422 6.32817 6.44103 6.59241 6.65648 6.85827 7.02464 7.21831 7.32565 7.34719 7.38528 7.75537 7.97173 8.98325 9.67449 10.70781 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028830 B = 0.003501 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.971893 B = 7996.460147 C = 8661.186165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.149 4.149 3 C 0.114 3.886 4 H 0.067 0.933 5 C -0.164 4.164 6 O -0.249 6.249 7 N -0.497 5.497 8 C 0.099 3.901 9 C -0.050 4.050 10 C -0.185 4.185 11 C -0.077 4.077 12 C -0.226 4.226 13 C 0.152 3.848 14 O -0.178 6.178 15 C -0.393 4.393 16 H 0.092 0.908 17 C 0.040 3.960 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.182 4.182 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.114 0.886 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.337 0.663 31 H 0.088 0.912 32 H 0.048 0.952 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.271 0.729 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.875 -10.483 -11.955 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.169 4.169 3 C 0.055 3.945 4 H 0.085 0.915 5 C -0.222 4.222 6 O -0.257 6.257 7 N -0.169 5.169 8 C -0.029 4.029 9 C -0.052 4.052 10 C -0.205 4.205 11 C -0.095 4.095 12 C -0.246 4.246 13 C 0.098 3.902 14 O -0.082 6.082 15 C -0.470 4.470 16 H 0.109 0.891 17 C -0.164 4.164 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.202 4.202 24 H 0.121 0.879 25 H 0.117 0.883 26 H 0.132 0.868 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.145 0.855 36 H 0.080 0.920 37 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 2.074 -10.616 -12.007 16.161 hybrid contribution -0.484 0.825 0.904 1.316 sum 1.590 -9.790 -11.103 14.888 Atomic orbital electron populations 1.23932 0.95676 1.02269 0.99519 1.22865 0.95621 0.98036 1.00350 1.21038 0.91861 0.95072 0.86514 0.91480 1.22184 1.00147 1.03236 0.96595 1.90781 1.71814 1.18192 1.44947 1.66900 1.19015 0.94764 1.36179 1.20927 0.97720 0.94417 0.89877 1.18935 0.95636 0.93381 0.97201 1.20460 0.99472 0.95732 1.04796 1.20761 0.98005 0.94293 0.96445 1.21230 0.97996 1.01661 1.03717 1.19273 0.89464 0.91201 0.90221 1.83975 1.41300 1.29921 1.52989 1.21277 1.12082 0.90720 1.22884 0.89103 1.25283 0.95577 0.99940 0.95645 1.70024 1.14831 1.38043 1.26902 0.85783 0.78604 0.80297 0.78770 1.19478 1.20268 1.19485 1.20058 1.02305 0.93415 1.04406 0.87885 0.88349 0.86780 0.91226 0.92163 0.92314 0.84749 0.89326 0.93340 0.87277 0.87246 0.85492 0.91950 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.51 14.32 29.02 0.42 -1.10 16 2 C -0.15 -1.47 9.15 -36.02 -0.33 -1.80 16 3 C 0.11 1.29 3.35 -27.88 -0.09 1.20 16 4 H 0.07 0.74 7.61 -51.93 -0.40 0.34 16 5 C -0.16 -1.68 9.54 37.16 0.35 -1.32 16 6 O -0.25 -3.54 10.91 -13.92 -0.15 -3.69 16 7 N -0.50 -7.25 7.31 -11.41 -0.08 -7.33 16 8 C 0.10 1.50 6.35 -4.97 -0.03 1.47 16 9 C -0.05 -0.89 5.39 -104.65 -0.56 -1.46 16 10 C -0.19 -3.20 9.70 -39.53 -0.38 -3.58 16 11 C -0.08 -1.39 10.04 -39.61 -0.40 -1.79 16 12 C -0.23 -4.86 9.17 -39.40 -0.36 -5.22 16 13 C 0.15 3.63 6.65 -39.11 -0.26 3.37 16 14 O -0.18 -5.04 9.76 0.05 0.00 -5.04 16 15 C -0.39 -10.91 9.49 30.89 0.29 -10.62 16 16 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 17 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -25.17 13.67 55.48 0.76 -24.41 16 19 Si 0.94 20.35 29.55 -169.99 -5.02 15.33 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 23 C -0.18 -3.77 9.65 -39.39 -0.38 -4.15 16 24 H 0.10 0.72 8.06 -52.49 -0.42 0.29 16 25 H 0.10 0.80 7.83 -52.48 -0.41 0.39 16 26 H 0.11 1.04 8.06 -52.49 -0.42 0.62 16 27 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.34 4.78 8.79 -39.30 -0.35 4.43 16 31 H 0.09 1.27 8.09 -51.93 -0.42 0.85 16 32 H 0.05 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.13 2.72 5.64 -52.49 -0.30 2.42 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 37 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 LS Contribution 325.07 15.07 4.90 4.90 Total: -1.00 -30.14 325.07 -6.51 -36.66 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -5.08 Total: 7.61 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: -1.83 Total: -24.02 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.68 Total: -31.74 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -0.15 Total: -8.73 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.14 -6.51 -36.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400924684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.080 kcal (2) G-P(sol) polarization free energy of solvation -30.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds