Wall clock time and date at job start Mon Mar 30 2020 06:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 119.99989 * 2 1 4 4 H 1.09002 * 109.47081 * 0.02562 * 3 2 1 5 5 C 1.52998 * 109.47511 * 240.00220 * 3 2 1 6 6 O 1.42901 * 109.46885 * 120.00026 * 3 2 1 7 7 N 1.46301 * 114.00293 * 205.00086 * 6 3 2 8 8 C 1.46903 * 111.00149 * 180.02562 * 7 6 3 9 9 C 1.50699 * 109.47107 * 180.02562 * 8 7 6 10 10 C 1.38328 * 119.96224 * 270.02211 * 9 8 7 11 11 C 1.38279 * 120.13490 * 179.97438 * 10 9 8 12 12 C 1.38120 * 120.06774 * 359.77134 * 11 10 9 13 13 C 1.38852 * 119.93464 * 0.50144 * 12 11 10 14 14 O 1.35752 * 120.07221 * 179.74702 * 13 12 11 15 15 C 1.34829 * 116.99954 * 354.17311 * 14 13 12 16 16 H 1.07998 * 119.99999 * 5.03596 * 15 14 13 17 17 C 1.38656 * 119.99670 * 185.03445 * 15 14 13 18 18 N 1.31550 * 120.00275 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99668 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47063 * 60.00398 * 19 17 15 21 21 H 1.48498 * 109.47240 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47319 * 300.00306 * 19 17 15 23 23 C 1.38073 * 119.96539 * 89.99605 * 9 8 7 24 24 H 1.07997 * 120.00050 * 179.97438 * 1 2 3 25 25 H 1.08003 * 119.99792 * 359.97438 * 1 2 3 26 26 H 1.07999 * 120.00288 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47220 * 179.97438 * 5 3 2 28 28 H 1.08994 * 109.47071 * 300.00250 * 5 3 2 29 29 H 1.09000 * 109.47230 * 60.00096 * 5 3 2 30 30 H 1.00893 * 110.99595 * 56.04786 * 7 6 3 31 31 H 1.09004 * 109.46952 * 59.99748 * 8 7 6 32 32 H 1.08998 * 109.46757 * 300.00364 * 8 7 6 33 33 H 1.08001 * 119.93314 * 359.97438 * 10 9 8 34 34 H 1.07999 * 119.96467 * 180.02562 * 11 10 9 35 35 H 1.08001 * 120.03298 * 180.27571 * 12 11 10 36 36 H 0.96999 * 119.99936 * 179.97438 * 18 17 15 37 37 H 1.07996 * 120.03547 * 0.04988 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9431 1.3863 -1.2492 6 8 2.8850 1.3808 1.1668 7 7 3.1997 2.7468 1.5855 8 6 4.0452 2.7476 2.7869 9 6 4.3473 4.1686 3.1876 10 6 5.4654 4.8064 2.6812 11 6 5.7457 6.1104 3.0461 12 6 4.9068 6.7817 3.9140 13 6 3.7866 6.1424 4.4284 14 8 2.9630 6.7978 5.2857 15 6 3.3520 8.0232 5.6918 16 1 4.2397 8.4742 5.2735 17 6 2.6123 8.7044 6.6465 18 7 1.5313 8.1548 7.1564 19 14 3.1517 10.4018 7.2097 20 1 3.1738 11.3253 6.0470 21 1 2.1992 10.9111 8.2288 22 1 4.5111 10.3183 7.8015 23 6 3.5073 4.8328 4.0592 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9354 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 3.4877 2.3305 -1.2494 28 1 3.6514 0.5579 -1.2493 29 1 2.3165 1.3286 -2.1392 30 1 2.3577 3.2821 1.7352 31 1 4.9772 2.2233 2.5756 32 1 3.5217 2.2447 3.5999 33 1 6.1209 4.2848 1.9995 34 1 6.6192 6.6059 2.6488 35 1 5.1238 7.8017 4.1951 36 1 1.0141 8.6312 7.8245 37 1 2.6347 4.3341 4.4545 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400924684.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:08 Heat of formation + Delta-G solvation = -3.028744 kcal Electronic energy + Delta-G solvation = -18644.853868 eV Core-core repulsion = 15582.641809 eV Total energy + Delta-G solvation = -3062.212059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.83415 -38.91166 -38.31333 -35.64207 -34.32347 -33.72976 -31.29456 -30.69142 -29.87079 -27.39292 -25.66875 -23.97166 -23.22483 -22.35030 -20.84919 -19.53752 -18.88161 -18.07757 -16.82846 -16.75683 -16.63081 -16.12761 -16.06682 -15.52261 -15.29728 -14.83225 -14.64959 -14.40682 -14.15933 -13.88226 -13.56114 -13.31987 -13.03124 -12.95968 -12.65273 -12.48957 -12.39644 -12.25686 -12.13953 -11.72767 -11.45960 -11.21388 -10.80276 -10.50743 -9.89941 -9.56175 -9.02028 -8.47215 -6.15985 0.37557 0.71622 1.12827 1.35480 1.46022 1.51627 1.91554 2.17890 2.83804 3.15188 3.44116 3.76951 3.86571 4.04902 4.07751 4.18300 4.30141 4.33124 4.38715 4.47010 4.56113 4.64006 4.71737 4.87360 4.93902 5.01774 5.10075 5.11892 5.25592 5.30939 5.46406 5.61742 5.62708 5.70500 5.73589 5.77187 6.01351 6.18126 6.25713 6.97454 7.77502 8.75779 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.028830 B = 0.003501 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.971893 B = 7996.460147 C = 8661.186165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.167 4.167 3 C 0.106 3.894 4 H 0.067 0.933 5 C -0.159 4.159 6 O -0.259 6.259 7 N -0.499 5.499 8 C 0.105 3.895 9 C -0.040 4.040 10 C -0.165 4.165 11 C -0.071 4.071 12 C -0.237 4.237 13 C 0.113 3.887 14 O -0.233 6.233 15 C -0.415 4.415 16 H 0.103 0.897 17 C -0.022 4.022 18 N -0.921 5.921 19 Si 1.018 2.982 20 H -0.256 1.256 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.192 4.192 24 H 0.121 0.879 25 H 0.100 0.900 26 H 0.120 0.880 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.336 0.664 31 H 0.106 0.894 32 H 0.047 0.953 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.121 0.879 36 H 0.272 0.728 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.656 -11.154 -13.893 18.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.186 4.186 3 C 0.048 3.952 4 H 0.085 0.915 5 C -0.216 4.216 6 O -0.269 6.269 7 N -0.170 5.170 8 C -0.024 4.024 9 C -0.041 4.041 10 C -0.184 4.184 11 C -0.088 4.088 12 C -0.257 4.257 13 C 0.063 3.937 14 O -0.140 6.140 15 C -0.491 4.491 16 H 0.120 0.880 17 C -0.220 4.220 18 N -0.560 5.560 19 Si 0.837 3.163 20 H -0.181 1.181 21 H -0.197 1.197 22 H -0.182 1.182 23 C -0.212 4.212 24 H 0.140 0.860 25 H 0.118 0.882 26 H 0.138 0.862 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.151 0.849 31 H 0.125 0.875 32 H 0.065 0.935 33 H 0.165 0.835 34 H 0.167 0.833 35 H 0.139 0.861 36 H 0.081 0.919 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.890 -11.316 -13.993 18.412 hybrid contribution -0.952 0.756 1.252 1.745 sum 2.938 -10.560 -12.741 16.808 Atomic orbital electron populations 1.24152 0.95364 1.03297 0.97437 1.22862 0.96044 0.97496 1.02233 1.21274 0.91908 0.96018 0.85984 0.91490 1.22134 1.00153 1.02609 0.96741 1.90761 1.72514 1.17317 1.46269 1.66829 1.19140 0.95581 1.35413 1.20861 0.98763 0.92511 0.90257 1.19195 0.94904 0.94439 0.95581 1.20983 0.98771 0.95267 1.03333 1.21180 0.98239 0.94592 0.94831 1.21368 0.97975 1.01743 1.04574 1.19816 0.90629 0.92463 0.90775 1.83939 1.43655 1.30774 1.55583 1.21799 1.12728 0.91157 1.23418 0.87973 1.26586 0.95445 1.04515 0.95443 1.70175 1.16843 1.40401 1.28536 0.84655 0.78539 0.74509 0.78579 1.18058 1.19728 1.18161 1.20232 1.02950 0.92746 1.05261 0.86048 0.88159 0.86184 0.92307 0.92065 0.90684 0.84861 0.87549 0.93510 0.83494 0.83310 0.86100 0.91854 0.87421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.49 14.32 67.78 0.97 -1.52 16 2 C -0.17 -2.99 9.15 25.65 0.23 -2.76 16 3 C 0.11 2.24 3.35 29.85 0.10 2.34 16 4 H 0.07 1.40 7.61 -2.39 -0.02 1.38 16 5 C -0.16 -2.95 9.54 71.98 0.69 -2.26 16 6 O -0.26 -6.92 10.91 -50.16 -0.55 -7.47 16 7 N -0.50 -13.68 7.31 -190.00 -1.39 -15.07 16 8 C 0.10 2.94 6.35 85.56 0.54 3.48 16 9 C -0.04 -1.35 5.39 -19.88 -0.11 -1.46 16 10 C -0.16 -5.07 9.70 22.30 0.22 -4.85 16 11 C -0.07 -2.35 10.04 22.25 0.22 -2.12 16 12 C -0.24 -10.13 9.17 22.39 0.21 -9.92 16 13 C 0.11 5.59 6.65 22.58 0.15 5.74 16 14 O -0.23 -13.97 9.76 -22.74 -0.22 -14.19 16 15 C -0.41 -24.06 9.49 67.92 0.64 -23.41 16 16 H 0.10 5.39 5.21 -2.91 -0.02 5.38 16 17 C -0.02 -1.27 5.49 84.83 0.47 -0.80 16 18 N -0.92 -56.53 13.67 21.61 0.30 -56.23 16 19 Si 1.02 42.56 29.55 68.60 2.03 44.59 16 20 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 23 C -0.19 -8.11 9.65 22.39 0.22 -7.90 16 24 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 25 H 0.10 1.46 7.83 -2.91 -0.02 1.44 16 26 H 0.12 1.98 8.06 -2.91 -0.02 1.95 16 27 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.34 9.25 8.79 -89.70 -0.79 8.46 16 31 H 0.11 2.66 8.09 -2.38 -0.02 2.64 16 32 H 0.05 1.34 8.08 -2.39 -0.02 1.32 16 33 H 0.15 3.55 8.06 -2.91 -0.02 3.53 16 34 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 35 H 0.12 5.22 5.64 -2.91 -0.02 5.20 16 36 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 37 H 0.11 4.58 8.06 -2.91 -0.02 4.55 16 Total: -1.00 -68.85 325.07 4.99 -63.86 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 0.28 Total: 29.95 kcal Atomic # 6 Polarization: -49.99 SS G_CDS: 4.55 Total: -45.44 kcal Atomic # 7 Polarization: -70.21 SS G_CDS: -1.09 Total: -71.30 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.77 Total: -21.66 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -68.85 4.99 -63.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400924684.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.831 kcal (2) G-P(sol) polarization free energy of solvation -68.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds