Wall clock time and date at job start Mon Mar 30 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00214 * 2 1 4 4 C 1.50695 * 120.00171 * 179.97438 * 2 1 3 5 5 O 1.42906 * 109.47041 * 0.02562 * 4 2 1 6 6 N 1.46297 * 114.00180 * 179.97438 * 5 4 2 7 7 C 1.46896 * 111.00191 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47325 * 180.02562 * 7 6 5 9 9 C 1.38118 * 120.03410 * 260.00127 * 8 7 6 10 10 C 1.38277 * 120.06938 * 180.02562 * 9 8 7 11 11 C 1.38332 * 120.13949 * 359.95040 * 10 9 8 12 12 C 1.38076 * 120.06559 * 0.02672 * 11 10 9 13 13 C 1.38854 * 120.03536 * 79.95475 * 8 7 6 14 14 O 1.35751 * 120.07020 * 0.04730 * 13 8 7 15 15 C 1.34834 * 117.00114 * 174.38801 * 14 13 8 16 16 H 1.07996 * 119.99771 * 5.06857 * 15 14 13 17 17 C 1.38655 * 119.99684 * 185.07486 * 15 14 13 18 18 N 1.31553 * 119.99590 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00134 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46815 * 90.00762 * 19 17 15 21 21 H 1.48504 * 109.47212 * 210.00151 * 19 17 15 22 22 H 1.48492 * 109.47289 * 330.00491 * 19 17 15 23 23 H 1.08000 * 119.99791 * 0.02562 * 1 2 3 24 24 H 1.07994 * 119.99701 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46975 * 240.00012 * 3 2 1 26 26 H 1.09002 * 109.47033 * 359.97438 * 3 2 1 27 27 H 1.08994 * 109.47522 * 119.99725 * 3 2 1 28 28 H 1.09006 * 109.47538 * 240.00208 * 4 2 1 29 29 H 1.09001 * 109.47453 * 120.00087 * 4 2 1 30 30 H 1.00905 * 110.99830 * 56.04406 * 6 5 4 31 31 H 1.08996 * 109.47209 * 59.99874 * 7 6 5 32 32 H 1.09007 * 109.47035 * 299.99871 * 7 6 5 33 33 H 1.08004 * 119.96842 * 359.97438 * 9 8 7 34 34 H 1.07999 * 119.93319 * 179.97438 * 10 9 8 35 35 H 1.08002 * 119.96534 * 180.02562 * 11 10 9 36 36 H 1.08000 * 120.02960 * 179.72723 * 12 11 10 37 37 H 0.97008 * 120.00232 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 0.0006 5 8 1.1349 -2.3913 0.0005 6 7 1.7640 -3.7120 0.0004 7 6 0.7523 -4.7771 -0.0003 8 6 1.4365 -6.1198 0.0003 9 6 1.5662 -6.8301 -1.1772 10 6 2.1934 -8.0625 -1.1774 11 6 2.6936 -8.5875 0.0007 12 6 2.5674 -7.8821 1.1809 13 6 1.9379 -6.6439 1.1843 14 8 1.8119 -5.9482 2.3432 15 6 2.2152 -6.5632 3.4733 16 1 2.6916 -7.5310 3.4209 17 6 2.0180 -5.9532 4.7028 18 7 2.4110 -6.5535 5.8054 19 14 1.1943 -4.2790 4.7934 20 1 -0.2742 -4.4564 4.9251 21 1 1.7108 -3.5363 5.9711 22 1 1.4915 -3.5136 3.5561 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5399 -0.9353 -0.0004 25 1 2.6902 1.3628 -0.8900 26 1 1.3552 2.1336 -0.0005 27 1 2.6902 1.3629 0.8899 28 1 2.6902 -1.3625 0.8906 29 1 2.6902 -1.3632 -0.8894 30 1 2.3945 -3.8122 0.7818 31 1 0.1300 -4.6864 -0.8905 32 1 0.1291 -4.6869 0.8895 33 1 1.1767 -6.4229 -2.0986 34 1 2.2933 -8.6162 -2.0992 35 1 3.1833 -9.5501 -0.0028 36 1 2.9542 -8.2945 2.1011 37 1 2.2734 -6.1266 6.6656 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400928683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:58 Heat of formation + Delta-G solvation = 13.874982 kcal Electronic energy + Delta-G solvation = -19380.271166 eV Core-core repulsion = 16318.792108 eV Total energy + Delta-G solvation = -3061.479058 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.43876 -37.41370 -36.67684 -35.00401 -32.97871 -32.40201 -29.64752 -28.95706 -27.20750 -25.97939 -25.38527 -24.04220 -21.60070 -20.65805 -18.52623 -17.93387 -17.25716 -16.85502 -15.72051 -15.29669 -14.97165 -14.86568 -14.30701 -14.03457 -13.85033 -13.68889 -13.63724 -13.10755 -12.75698 -12.51906 -12.37404 -12.29043 -11.92132 -11.44983 -11.39091 -11.12160 -10.89226 -10.86548 -10.72995 -10.40748 -10.25338 -9.48128 -9.01305 -8.96424 -8.48869 -8.14179 -7.46003 -6.50010 -4.17502 1.88753 2.20032 2.22943 3.01818 3.14565 3.19598 3.31370 4.14348 4.42218 4.71554 4.85569 4.95923 5.03276 5.29668 5.38690 5.42518 5.43500 5.55836 5.60379 5.68091 5.72067 5.78709 5.81973 5.98928 6.04724 6.06768 6.27016 6.49949 6.60752 6.69402 6.77125 6.94731 7.07758 7.09090 7.22513 7.52066 7.57994 7.71144 7.95306 8.84889 9.44109 10.57483 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.007030 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.980291 B = 3981.993959 C = 5783.549040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.138 4.138 3 C -0.112 4.112 4 C 0.096 3.904 5 O -0.259 6.259 6 N -0.496 5.496 7 C 0.110 3.890 8 C -0.163 4.163 9 C -0.054 4.054 10 C -0.206 4.206 11 C -0.071 4.071 12 C -0.220 4.220 13 C 0.166 3.834 14 O -0.217 6.217 15 C -0.390 4.390 16 H 0.108 0.892 17 C 0.067 3.933 18 N -0.876 5.876 19 Si 0.903 3.097 20 H -0.273 1.273 21 H -0.281 1.281 22 H -0.262 1.262 23 H 0.095 0.905 24 H 0.108 0.892 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.342 0.658 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.117 0.883 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.134 0.866 37 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.001 7.889 -11.178 13.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.139 4.139 3 C -0.169 4.169 4 C 0.019 3.981 5 O -0.266 6.266 6 N -0.168 5.168 7 C -0.018 4.018 8 C -0.166 4.166 9 C -0.073 4.073 10 C -0.225 4.225 11 C -0.089 4.089 12 C -0.239 4.239 13 C 0.113 3.887 14 O -0.122 6.122 15 C -0.466 4.466 16 H 0.125 0.875 17 C -0.137 4.137 18 N -0.514 5.514 19 Si 0.729 3.271 20 H -0.199 1.199 21 H -0.207 1.207 22 H -0.186 1.186 23 H 0.113 0.887 24 H 0.126 0.874 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.158 0.842 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.135 0.865 34 H 0.128 0.872 35 H 0.129 0.871 36 H 0.152 0.848 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.213 8.172 -11.546 14.197 hybrid contribution -0.312 0.458 1.350 1.459 sum -1.526 8.630 -10.196 13.445 Atomic orbital electron populations 1.23729 0.95424 1.02071 1.00163 1.21628 0.95914 0.94288 1.02105 1.20767 1.00252 0.93606 1.02270 1.21053 0.91999 0.84267 1.00783 1.90665 1.28461 1.10342 1.97127 1.66979 1.14092 0.88971 1.46710 1.20643 0.93341 0.86027 1.01826 1.18593 1.09095 0.96915 0.91970 1.20569 0.96887 0.94092 0.95736 1.20677 1.06426 0.97701 0.97720 1.20869 0.97223 0.98417 0.92397 1.21278 1.06699 0.96572 0.99371 1.18955 0.92863 0.90559 0.86286 1.83540 1.74403 1.41092 1.13165 1.20749 1.39385 1.05331 0.81106 0.87488 1.24436 0.96453 0.99243 0.93592 1.69636 1.45095 1.38724 0.97904 0.86235 0.79852 0.82765 0.78298 1.19869 1.20682 1.18650 0.88686 0.87410 0.91510 0.91670 0.91537 0.92547 0.91672 0.84239 0.89922 0.93146 0.86543 0.87212 0.87086 0.84797 0.90959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.28 13.68 29.01 0.40 -1.89 16 2 C -0.14 -1.77 6.05 -101.07 -0.61 -2.38 16 3 C -0.11 -1.08 10.12 36.01 0.36 -0.71 16 4 C 0.10 1.41 6.80 36.00 0.24 1.66 16 5 O -0.26 -4.59 9.68 -13.92 -0.13 -4.72 16 6 N -0.50 -9.15 7.32 -11.41 -0.08 -9.23 16 7 C 0.11 2.03 6.02 -4.98 -0.03 2.00 16 8 C -0.16 -3.16 5.41 -104.44 -0.56 -3.72 16 9 C -0.05 -0.91 9.66 -39.61 -0.38 -1.29 16 10 C -0.21 -3.35 10.04 -39.53 -0.40 -3.75 16 11 C -0.07 -1.24 10.04 -39.61 -0.40 -1.63 16 12 C -0.22 -4.59 9.17 -39.40 -0.36 -4.95 16 13 C 0.17 3.68 6.62 -39.11 -0.26 3.42 16 14 O -0.22 -5.44 7.78 0.03 0.00 -5.44 16 15 C -0.39 -10.63 9.95 30.89 0.31 -10.32 16 16 H 0.11 2.99 5.44 -52.49 -0.29 2.70 16 17 C 0.07 1.83 5.49 -17.52 -0.10 1.73 16 18 N -0.88 -24.85 13.96 55.48 0.77 -24.07 16 19 Si 0.90 21.55 28.62 -169.99 -4.86 16.68 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.26 -6.28 7.11 56.52 0.40 -5.87 16 23 H 0.09 1.00 7.83 -52.49 -0.41 0.59 16 24 H 0.11 1.57 6.84 -52.49 -0.36 1.21 16 25 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.06 0.54 7.78 -51.93 -0.40 0.14 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.34 6.69 8.86 -39.29 -0.35 6.34 16 31 H 0.08 1.36 8.00 -51.93 -0.42 0.94 16 32 H 0.05 1.02 7.86 -51.92 -0.41 0.61 16 33 H 0.12 1.65 8.04 -52.48 -0.42 1.23 16 34 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.13 2.93 5.64 -52.49 -0.30 2.63 16 37 H 0.28 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 321.02 15.07 4.84 4.84 Total: -1.00 -28.67 321.02 -6.28 -34.95 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: -5.02 Total: 8.82 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -1.79 Total: -21.83 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 0.69 Total: -33.30 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.13 Total: -10.16 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.86 Total: 16.68 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.67 -6.28 -34.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400928683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.823 kcal (2) G-P(sol) polarization free energy of solvation -28.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds