Wall clock time and date at job start Mon Mar 30 2020 06:38:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00214 * 2 1 4 4 C 1.50695 * 120.00171 * 179.97438 * 2 1 3 5 5 O 1.42906 * 109.47041 * 0.02562 * 4 2 1 6 6 N 1.46297 * 114.00180 * 179.97438 * 5 4 2 7 7 C 1.46896 * 111.00191 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47325 * 180.02562 * 7 6 5 9 9 C 1.38118 * 120.03410 * 260.00127 * 8 7 6 10 10 C 1.38277 * 120.06938 * 180.02562 * 9 8 7 11 11 C 1.38332 * 120.13949 * 359.95040 * 10 9 8 12 12 C 1.38076 * 120.06559 * 0.02672 * 11 10 9 13 13 C 1.38854 * 120.03536 * 79.95475 * 8 7 6 14 14 O 1.35751 * 120.07020 * 0.04730 * 13 8 7 15 15 C 1.34834 * 117.00114 * 174.38801 * 14 13 8 16 16 H 1.07996 * 119.99771 * 5.06857 * 15 14 13 17 17 C 1.38655 * 119.99684 * 185.07486 * 15 14 13 18 18 N 1.31553 * 119.99590 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 120.00134 * 359.97438 * 17 15 14 20 20 H 1.48503 * 109.46815 * 90.00762 * 19 17 15 21 21 H 1.48504 * 109.47212 * 210.00151 * 19 17 15 22 22 H 1.48492 * 109.47289 * 330.00491 * 19 17 15 23 23 H 1.08000 * 119.99791 * 0.02562 * 1 2 3 24 24 H 1.07994 * 119.99701 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.46975 * 240.00012 * 3 2 1 26 26 H 1.09002 * 109.47033 * 359.97438 * 3 2 1 27 27 H 1.08994 * 109.47522 * 119.99725 * 3 2 1 28 28 H 1.09006 * 109.47538 * 240.00208 * 4 2 1 29 29 H 1.09001 * 109.47453 * 120.00087 * 4 2 1 30 30 H 1.00905 * 110.99830 * 56.04406 * 6 5 4 31 31 H 1.08996 * 109.47209 * 59.99874 * 7 6 5 32 32 H 1.09007 * 109.47035 * 299.99871 * 7 6 5 33 33 H 1.08004 * 119.96842 * 359.97438 * 9 8 7 34 34 H 1.07999 * 119.93319 * 179.97438 * 10 9 8 35 35 H 1.08002 * 119.96534 * 180.02562 * 11 10 9 36 36 H 1.08000 * 120.02960 * 179.72723 * 12 11 10 37 37 H 0.97008 * 120.00232 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0635 -1.3050 0.0006 5 8 1.1349 -2.3913 0.0005 6 7 1.7640 -3.7120 0.0004 7 6 0.7523 -4.7771 -0.0003 8 6 1.4365 -6.1198 0.0003 9 6 1.5662 -6.8301 -1.1772 10 6 2.1934 -8.0625 -1.1774 11 6 2.6936 -8.5875 0.0007 12 6 2.5674 -7.8821 1.1809 13 6 1.9379 -6.6439 1.1843 14 8 1.8119 -5.9482 2.3432 15 6 2.2152 -6.5632 3.4733 16 1 2.6916 -7.5310 3.4209 17 6 2.0180 -5.9532 4.7028 18 7 2.4110 -6.5535 5.8054 19 14 1.1943 -4.2790 4.7934 20 1 -0.2742 -4.4564 4.9251 21 1 1.7108 -3.5363 5.9711 22 1 1.4915 -3.5136 3.5561 23 1 -0.5400 0.9353 -0.0004 24 1 -0.5399 -0.9353 -0.0004 25 1 2.6902 1.3628 -0.8900 26 1 1.3552 2.1336 -0.0005 27 1 2.6902 1.3629 0.8899 28 1 2.6902 -1.3625 0.8906 29 1 2.6902 -1.3632 -0.8894 30 1 2.3945 -3.8122 0.7818 31 1 0.1300 -4.6864 -0.8905 32 1 0.1291 -4.6869 0.8895 33 1 1.1767 -6.4229 -2.0986 34 1 2.2933 -8.6162 -2.0992 35 1 3.1833 -9.5501 -0.0028 36 1 2.9542 -8.2945 2.1011 37 1 2.2734 -6.1266 6.6656 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400928683.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:58 Heat of formation + Delta-G solvation = -3.155687 kcal Electronic energy + Delta-G solvation = -19381.009672 eV Core-core repulsion = 16318.792108 eV Total energy + Delta-G solvation = -3062.217564 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07425 -38.68618 -38.28751 -36.19132 -34.56488 -34.19369 -31.10798 -30.48574 -28.06124 -27.39945 -27.07420 -25.48848 -23.24099 -22.17197 -19.82296 -19.56528 -18.92482 -18.23923 -17.06282 -16.82619 -16.38849 -16.30339 -15.85610 -15.64987 -15.35942 -15.19645 -14.83274 -14.46257 -14.15685 -14.06297 -13.82285 -13.62454 -13.19625 -13.05742 -12.62444 -12.55137 -12.40503 -12.28975 -12.10794 -11.99485 -11.70184 -11.30631 -10.97307 -10.06020 -9.89437 -9.61337 -9.08822 -8.55026 -6.26161 0.40608 0.67548 1.23291 1.24591 1.26110 1.40837 1.66855 2.18499 2.74972 3.00796 3.11736 3.79072 3.84884 3.96009 4.03940 4.25996 4.32362 4.36074 4.38077 4.48667 4.57964 4.61425 4.71225 4.79162 4.83487 4.98374 5.01749 5.11081 5.21487 5.38383 5.43961 5.60436 5.61732 5.72013 5.75075 5.83004 5.88591 6.20580 6.23906 6.80278 7.53354 8.56794 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.013180 B = 0.007030 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2123.980291 B = 3981.993959 C = 5783.549040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.143 4.143 3 C -0.109 4.109 4 C 0.087 3.913 5 O -0.270 6.270 6 N -0.495 5.495 7 C 0.113 3.887 8 C -0.162 4.162 9 C -0.051 4.051 10 C -0.181 4.181 11 C -0.071 4.071 12 C -0.241 4.241 13 C 0.130 3.870 14 O -0.241 6.241 15 C -0.393 4.393 16 H 0.085 0.915 17 C 0.018 3.982 18 N -0.919 5.919 19 Si 0.962 3.038 20 H -0.272 1.272 21 H -0.267 1.267 22 H -0.268 1.268 23 H 0.120 0.880 24 H 0.085 0.915 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.052 0.948 29 H 0.077 0.923 30 H 0.330 0.670 31 H 0.108 0.892 32 H 0.025 0.975 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.142 0.858 36 H 0.110 0.890 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.347 8.854 -14.303 16.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.144 4.144 3 C -0.165 4.165 4 C 0.010 3.990 5 O -0.278 6.278 6 N -0.164 5.164 7 C -0.015 4.015 8 C -0.164 4.164 9 C -0.069 4.069 10 C -0.200 4.200 11 C -0.089 4.089 12 C -0.260 4.260 13 C 0.081 3.919 14 O -0.148 6.148 15 C -0.470 4.470 16 H 0.102 0.898 17 C -0.181 4.181 18 N -0.560 5.560 19 Si 0.785 3.215 20 H -0.197 1.197 21 H -0.192 1.192 22 H -0.193 1.193 23 H 0.138 0.862 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.145 0.855 31 H 0.126 0.874 32 H 0.043 0.957 33 H 0.172 0.828 34 H 0.173 0.827 35 H 0.160 0.840 36 H 0.128 0.872 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.556 9.121 -14.718 17.385 hybrid contribution -0.179 0.020 1.987 1.995 sum -1.735 9.141 -12.732 15.769 Atomic orbital electron populations 1.23810 0.95619 1.02259 1.00570 1.21871 0.96108 0.94585 1.01829 1.20810 1.00541 0.92076 1.03096 1.21314 0.92159 0.84353 1.01156 1.90658 1.29516 1.10439 1.97188 1.66965 1.13927 0.89681 1.45834 1.20665 0.93181 0.85924 1.01770 1.18883 1.08309 0.97422 0.91824 1.21062 0.95920 0.93974 0.95957 1.21240 1.03034 0.97043 0.98633 1.21243 0.96813 0.99297 0.91532 1.21330 1.07561 0.96962 1.00147 1.19468 0.94500 0.91595 0.86357 1.83501 1.76377 1.41642 1.13275 1.20682 1.39104 1.04726 0.82457 0.89788 1.25105 0.97349 1.02387 0.93292 1.69710 1.47433 1.40430 0.98446 0.85352 0.78834 0.79063 0.78203 1.19734 1.19186 1.19307 0.86176 0.89654 0.90200 0.90061 0.91105 0.92945 0.90549 0.85472 0.87399 0.95693 0.82764 0.82712 0.84049 0.87226 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.53 13.68 67.78 0.93 -3.61 16 2 C -0.14 -3.42 6.05 -16.49 -0.10 -3.52 16 3 C -0.11 -1.80 10.12 71.24 0.72 -1.08 16 4 C 0.09 2.48 6.80 71.23 0.48 2.97 16 5 O -0.27 -9.44 9.68 -50.15 -0.49 -9.93 16 6 N -0.49 -18.02 7.32 -190.01 -1.39 -19.41 16 7 C 0.11 4.09 6.02 85.56 0.51 4.60 16 8 C -0.16 -6.06 5.41 -19.75 -0.11 -6.17 16 9 C -0.05 -1.50 9.66 22.25 0.22 -1.28 16 10 C -0.18 -5.01 10.04 22.30 0.22 -4.79 16 11 C -0.07 -2.30 10.04 22.25 0.22 -2.07 16 12 C -0.24 -10.22 9.17 22.39 0.21 -10.01 16 13 C 0.13 5.90 6.62 22.58 0.15 6.04 16 14 O -0.24 -12.60 7.78 -22.80 -0.18 -12.78 16 15 C -0.39 -22.66 9.95 67.92 0.68 -21.98 16 16 H 0.08 5.07 5.44 -2.91 -0.02 5.05 16 17 C 0.02 1.01 5.49 84.83 0.47 1.47 16 18 N -0.92 -54.47 13.96 21.61 0.30 -54.17 16 19 Si 0.96 46.08 28.62 68.60 1.96 48.05 16 20 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 23 H 0.12 2.26 7.83 -2.91 -0.02 2.24 16 24 H 0.09 2.46 6.84 -2.91 -0.02 2.44 16 25 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.08 1.10 7.78 -2.39 -0.02 1.08 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.05 1.52 8.14 -2.38 -0.02 1.51 16 29 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.33 13.19 8.86 -89.69 -0.79 12.39 16 31 H 0.11 3.30 8.00 -2.39 -0.02 3.28 16 32 H 0.02 1.02 7.86 -2.38 -0.02 1.00 16 33 H 0.15 3.47 8.04 -2.91 -0.02 3.44 16 34 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 36 H 0.11 5.13 5.64 -2.91 -0.02 5.11 16 37 H 0.28 15.53 8.31 -92.70 -0.77 14.76 16 Total: -1.00 -65.23 321.02 5.09 -60.14 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.28 Total: 27.53 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 4.60 Total: -39.43 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -1.09 Total: -73.58 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.66 Total: -22.71 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 1.96 Total: 48.05 kcal Total: -65.23 5.09 -60.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400928683.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.987 kcal (2) G-P(sol) polarization free energy of solvation -65.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds