Wall clock time and date at job start Mon Mar 30 2020 06:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00124 * 2 1 4 4 H 1.09001 * 109.47191 * 0.02562 * 3 2 1 5 5 C 1.53004 * 109.47157 * 120.00016 * 3 2 1 6 6 O 1.42901 * 109.47152 * 239.99874 * 3 2 1 7 7 N 1.46304 * 113.99826 * 154.99933 * 6 3 2 8 8 C 1.46901 * 110.99820 * 180.02562 * 7 6 3 9 9 C 1.50701 * 109.47277 * 180.02562 * 8 7 6 10 10 C 1.38121 * 120.03549 * 260.00516 * 9 8 7 11 11 C 1.38277 * 120.06553 * 180.23045 * 10 9 8 12 12 C 1.38322 * 120.14212 * 359.48544 * 11 10 9 13 13 C 1.38077 * 120.06723 * 0.51117 * 12 11 10 14 14 C 1.38858 * 120.03520 * 79.97260 * 9 8 7 15 15 O 1.35754 * 120.06718 * 0.02562 * 14 9 8 16 16 C 1.34837 * 117.00266 * 174.41833 * 15 14 9 17 17 H 1.07998 * 119.99309 * 5.06068 * 16 15 14 18 18 C 1.38653 * 120.00284 * 185.06353 * 16 15 14 19 19 N 1.31556 * 120.00031 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99981 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47337 * 89.99820 * 20 18 16 22 22 H 1.48495 * 109.47204 * 210.00271 * 20 18 16 23 23 H 1.48502 * 109.47131 * 329.99784 * 20 18 16 24 24 H 1.07996 * 120.00072 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99988 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99988 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47215 * 180.02562 * 5 3 2 28 28 H 1.08995 * 109.46927 * 299.99883 * 5 3 2 29 29 H 1.09001 * 109.46840 * 60.00066 * 5 3 2 30 30 H 1.00907 * 111.00152 * 56.04852 * 7 6 3 31 31 H 1.08996 * 109.47496 * 60.00252 * 8 7 6 32 32 H 1.09007 * 109.47291 * 299.99770 * 8 7 6 33 33 H 1.07991 * 119.96731 * 359.94706 * 10 9 8 34 34 H 1.08005 * 119.92766 * 179.73746 * 11 10 9 35 35 H 1.08003 * 119.96534 * 180.27876 * 12 11 10 36 36 H 1.07997 * 120.03731 * 179.76669 * 13 12 11 37 37 H 0.96996 * 120.00032 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3861 1.2493 6 8 2.8851 1.3807 -1.1668 7 7 3.1998 2.7468 -1.5854 8 6 4.0443 2.7477 -2.7874 9 6 4.3474 4.1687 -3.1873 10 6 3.6348 4.7666 -4.2083 11 6 3.9156 6.0688 -4.5789 12 6 4.9032 6.7804 -3.9219 13 6 5.6191 6.1883 -2.9004 14 6 5.3430 4.8786 -2.5292 15 8 6.0450 4.2938 -1.5252 16 6 7.0728 4.9961 -1.0071 17 1 7.2545 6.0089 -1.3352 18 6 7.8965 4.4180 -0.0532 19 7 7.6755 3.1841 0.3460 20 14 9.3199 5.3913 0.6651 21 1 8.8585 6.1275 1.8694 22 1 10.4147 4.4617 1.0425 23 1 9.8183 6.3584 -0.3456 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 3.4879 2.3302 1.2495 28 1 2.3165 1.3284 2.1392 29 1 3.6515 0.5576 1.2492 30 1 3.6360 3.2632 -0.8362 31 1 3.5200 2.2452 -3.6002 32 1 4.9764 2.2232 -2.5770 33 1 2.8606 4.2150 -4.7207 34 1 3.3599 6.5327 -5.3804 35 1 5.1171 7.7988 -4.2107 36 1 6.3926 6.7431 -2.3902 37 1 8.2519 2.7796 1.0131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000400942098.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:17 Heat of formation + Delta-G solvation = 14.102123 kcal Electronic energy + Delta-G solvation = -19474.812724 eV Core-core repulsion = 16413.343515 eV Total energy + Delta-G solvation = -3061.469209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.24099 -37.32597 -36.46652 -34.35208 -32.57388 -32.22200 -29.78229 -29.14995 -28.40586 -25.45821 -24.11461 -22.62243 -21.64568 -20.52366 -19.69276 -18.01391 -17.16992 -16.70009 -15.41018 -15.04598 -14.81027 -14.48645 -14.15970 -14.14794 -13.68625 -13.57951 -13.19449 -12.94554 -12.78428 -12.27510 -11.98385 -11.75648 -11.70604 -11.41979 -11.30412 -10.93000 -10.74921 -10.72557 -10.50639 -10.42533 -10.08491 -9.44865 -9.40313 -8.90693 -8.31937 -7.97498 -7.28713 -6.51321 -4.11013 1.98940 2.22391 2.32928 3.08611 3.10148 3.14487 3.41923 3.91035 4.53497 4.96071 5.02998 5.15126 5.18897 5.38940 5.51862 5.56035 5.58003 5.64826 5.80117 5.81077 5.92049 6.00893 6.19664 6.23988 6.35157 6.38211 6.44610 6.60735 6.66161 6.76692 6.84254 7.04304 7.14754 7.21197 7.32488 7.35419 7.76021 7.81210 7.93818 8.94401 9.60549 10.65799 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.006638 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.075650 B = 4217.302302 C = 6047.569296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.137 4.137 3 C 0.112 3.888 4 H 0.071 0.929 5 C -0.176 4.176 6 O -0.251 6.251 7 N -0.496 5.496 8 C 0.111 3.889 9 C -0.163 4.163 10 C -0.053 4.053 11 C -0.215 4.215 12 C -0.070 4.070 13 C -0.233 4.233 14 C 0.159 3.841 15 O -0.176 6.176 16 C -0.394 4.394 17 H 0.092 0.908 18 C 0.042 3.958 19 N -0.860 5.860 20 Si 0.940 3.060 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.268 1.268 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.112 0.888 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.343 0.657 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.563 -0.676 -1.678 8.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.156 4.156 3 C 0.054 3.946 4 H 0.089 0.911 5 C -0.234 4.234 6 O -0.258 6.258 7 N -0.167 5.167 8 C -0.018 4.018 9 C -0.165 4.165 10 C -0.072 4.072 11 C -0.234 4.234 12 C -0.089 4.089 13 C -0.252 4.252 14 C 0.104 3.896 15 O -0.080 6.080 16 C -0.470 4.470 17 H 0.109 0.891 18 C -0.163 4.163 19 N -0.494 5.494 20 Si 0.764 3.236 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.192 1.192 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.130 0.870 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.159 0.841 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.133 0.867 34 H 0.125 0.875 35 H 0.126 0.874 36 H 0.145 0.855 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.981 -1.198 -1.839 9.245 hybrid contribution 1.690 0.514 0.918 1.991 sum -7.290 -0.684 -0.921 7.380 Atomic orbital electron populations 1.23849 0.95627 1.01925 1.00544 1.22796 0.95562 0.97898 0.99382 1.21015 0.92236 0.95413 0.85984 0.91122 1.22316 1.00347 1.03394 0.97298 1.90767 1.70764 1.19062 1.45246 1.67027 1.48329 0.94911 1.06463 1.20604 0.95895 0.93819 0.91464 1.18616 1.01027 0.95500 1.01391 1.20572 0.96801 0.94452 0.95369 1.20605 1.02899 0.95689 1.04177 1.20800 0.94868 0.98408 0.94794 1.21155 1.05301 0.96087 1.02691 1.19227 0.91234 0.91176 0.87939 1.83942 1.39893 1.42773 1.41355 1.21308 1.05632 0.97892 1.22145 0.89062 1.25260 0.98370 0.96149 0.96514 1.70026 1.37893 1.12407 1.29093 0.85730 0.79650 0.78833 0.79351 1.19882 1.20272 1.19202 0.88177 0.88408 0.87016 0.91674 0.92056 0.91885 0.84109 0.90424 0.92669 0.86745 0.87469 0.87434 0.85459 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.03 14.32 29.01 0.42 -1.61 16 2 C -0.14 -1.83 9.15 -36.03 -0.33 -2.16 16 3 C 0.11 1.78 3.32 -27.88 -0.09 1.69 16 4 H 0.07 1.09 7.74 -51.93 -0.40 0.69 16 5 C -0.18 -2.75 9.52 37.16 0.35 -2.40 16 6 O -0.25 -4.86 10.91 -13.92 -0.15 -5.02 16 7 N -0.50 -9.93 7.29 -11.41 -0.08 -10.02 16 8 C 0.11 2.25 6.02 -4.98 -0.03 2.22 16 9 C -0.16 -3.38 5.41 -104.44 -0.56 -3.95 16 10 C -0.05 -0.95 9.66 -39.61 -0.38 -1.34 16 11 C -0.21 -3.68 10.04 -39.54 -0.40 -4.07 16 12 C -0.07 -1.27 10.04 -39.61 -0.40 -1.67 16 13 C -0.23 -4.95 9.17 -39.40 -0.36 -5.31 16 14 C 0.16 3.70 6.62 -39.11 -0.26 3.44 16 15 O -0.18 -4.75 8.95 0.01 0.00 -4.75 16 16 C -0.39 -10.59 9.49 30.89 0.29 -10.30 16 17 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 18 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 19 N -0.86 -24.36 13.67 55.48 0.76 -23.61 16 20 Si 0.94 20.09 29.55 -169.99 -5.02 15.07 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 22 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 24 H 0.10 0.91 8.06 -52.49 -0.42 0.49 16 25 H 0.10 1.03 7.83 -52.48 -0.41 0.62 16 26 H 0.11 1.42 8.06 -52.48 -0.42 1.00 16 27 H 0.06 1.14 7.73 -51.93 -0.40 0.74 16 28 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.34 7.38 8.42 -39.29 -0.33 7.05 16 31 H 0.08 1.42 8.00 -51.93 -0.42 1.00 16 32 H 0.06 1.26 7.86 -51.93 -0.41 0.86 16 33 H 0.11 1.76 8.04 -52.49 -0.42 1.34 16 34 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 35 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 36 H 0.13 2.70 5.64 -52.49 -0.30 2.40 16 37 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 323.22 15.07 4.87 4.87 Total: -1.00 -29.03 323.22 -6.51 -35.54 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.35 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: -1.85 Total: -24.45 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.68 Total: -33.62 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: -0.15 Total: -9.76 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.03 -6.51 -35.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400942098.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.644 kcal (2) G-P(sol) polarization free energy of solvation -29.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds