Wall clock time and date at job start Mon Mar 30 2020 06:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50694 * 120.00124 * 2 1 4 4 H 1.09001 * 109.47191 * 0.02562 * 3 2 1 5 5 C 1.53004 * 109.47157 * 120.00016 * 3 2 1 6 6 O 1.42901 * 109.47152 * 239.99874 * 3 2 1 7 7 N 1.46304 * 113.99826 * 154.99933 * 6 3 2 8 8 C 1.46901 * 110.99820 * 180.02562 * 7 6 3 9 9 C 1.50701 * 109.47277 * 180.02562 * 8 7 6 10 10 C 1.38121 * 120.03549 * 260.00516 * 9 8 7 11 11 C 1.38277 * 120.06553 * 180.23045 * 10 9 8 12 12 C 1.38322 * 120.14212 * 359.48544 * 11 10 9 13 13 C 1.38077 * 120.06723 * 0.51117 * 12 11 10 14 14 C 1.38858 * 120.03520 * 79.97260 * 9 8 7 15 15 O 1.35754 * 120.06718 * 0.02562 * 14 9 8 16 16 C 1.34837 * 117.00266 * 174.41833 * 15 14 9 17 17 H 1.07998 * 119.99309 * 5.06068 * 16 15 14 18 18 C 1.38653 * 120.00284 * 185.06353 * 16 15 14 19 19 N 1.31556 * 120.00031 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99981 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47337 * 89.99820 * 20 18 16 22 22 H 1.48495 * 109.47204 * 210.00271 * 20 18 16 23 23 H 1.48502 * 109.47131 * 329.99784 * 20 18 16 24 24 H 1.07996 * 120.00072 * 180.02562 * 1 2 3 25 25 H 1.08003 * 119.99988 * 0.02562 * 1 2 3 26 26 H 1.08003 * 119.99988 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47215 * 180.02562 * 5 3 2 28 28 H 1.08995 * 109.46927 * 299.99883 * 5 3 2 29 29 H 1.09001 * 109.46840 * 60.00066 * 5 3 2 30 30 H 1.00907 * 111.00152 * 56.04852 * 7 6 3 31 31 H 1.08996 * 109.47496 * 60.00252 * 8 7 6 32 32 H 1.09007 * 109.47291 * 299.99770 * 8 7 6 33 33 H 1.07991 * 119.96731 * 359.94706 * 10 9 8 34 34 H 1.08005 * 119.92766 * 179.73746 * 11 10 9 35 35 H 1.08003 * 119.96534 * 180.27876 * 12 11 10 36 36 H 1.07997 * 120.03731 * 179.76669 * 13 12 11 37 37 H 0.96996 * 120.00032 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3861 1.2493 6 8 2.8851 1.3807 -1.1668 7 7 3.1998 2.7468 -1.5854 8 6 4.0443 2.7477 -2.7874 9 6 4.3474 4.1687 -3.1873 10 6 3.6348 4.7666 -4.2083 11 6 3.9156 6.0688 -4.5789 12 6 4.9032 6.7804 -3.9219 13 6 5.6191 6.1883 -2.9004 14 6 5.3430 4.8786 -2.5292 15 8 6.0450 4.2938 -1.5252 16 6 7.0728 4.9961 -1.0071 17 1 7.2545 6.0089 -1.3352 18 6 7.8965 4.4180 -0.0532 19 7 7.6755 3.1841 0.3460 20 14 9.3199 5.3913 0.6651 21 1 8.8585 6.1275 1.8694 22 1 10.4147 4.4617 1.0425 23 1 9.8183 6.3584 -0.3456 24 1 -0.5400 -0.9353 0.0004 25 1 -0.5400 0.9353 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 3.4879 2.3302 1.2495 28 1 2.3165 1.3284 2.1392 29 1 3.6515 0.5576 1.2492 30 1 3.6360 3.2632 -0.8362 31 1 3.5200 2.2452 -3.6002 32 1 4.9764 2.2232 -2.5770 33 1 2.8606 4.2150 -4.7207 34 1 3.3599 6.5327 -5.3804 35 1 5.1171 7.7988 -4.2107 36 1 6.3926 6.7431 -2.3902 37 1 8.2519 2.7796 1.0131 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000400942098.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:17 Heat of formation + Delta-G solvation = -3.555016 kcal Electronic energy + Delta-G solvation = -19475.578395 eV Core-core repulsion = 16413.343515 eV Total energy + Delta-G solvation = -3062.234880 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 263.131 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.91848 -38.72208 -38.15168 -35.72728 -34.31764 -33.80504 -31.14913 -30.62345 -29.96311 -27.39596 -25.66463 -23.86041 -23.31095 -22.08834 -20.79198 -19.82029 -18.78362 -18.31569 -16.85447 -16.58717 -16.48969 -16.04451 -15.69341 -15.49800 -15.35650 -15.12426 -14.65106 -14.44843 -14.21006 -13.85223 -13.56923 -13.21255 -13.15516 -13.00755 -12.63121 -12.53163 -12.33944 -12.23274 -12.11719 -11.74948 -11.46490 -11.16254 -10.81726 -10.47183 -9.88687 -9.56133 -8.97367 -8.47516 -6.15174 0.46556 0.75041 1.16611 1.33657 1.42201 1.50028 2.00131 2.15466 2.85522 3.18575 3.45686 3.80893 3.90194 4.03128 4.05338 4.15553 4.26345 4.34903 4.43517 4.46244 4.54898 4.65371 4.78475 4.80017 4.88904 5.05377 5.10989 5.14064 5.16273 5.28969 5.49957 5.63382 5.66388 5.71328 5.77101 5.77784 5.99969 6.24198 6.26179 6.97639 7.75761 8.74022 Molecular weight = 263.13amu Principal moments of inertia in cm(-1) A = 0.013477 B = 0.006638 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2077.075650 B = 4217.302302 C = 6047.569296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.167 4.167 3 C 0.108 3.892 4 H 0.076 0.924 5 C -0.171 4.171 6 O -0.268 6.268 7 N -0.490 5.490 8 C 0.117 3.883 9 C -0.172 4.172 10 C -0.052 4.052 11 C -0.191 4.191 12 C -0.067 4.067 13 C -0.249 4.249 14 C 0.122 3.878 15 O -0.221 6.221 16 C -0.412 4.412 17 H 0.100 0.900 18 C -0.018 4.018 19 N -0.915 5.915 20 Si 1.013 2.987 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.254 1.254 24 H 0.128 0.872 25 H 0.105 0.895 26 H 0.114 0.886 27 H 0.035 0.965 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.328 0.672 31 H 0.101 0.899 32 H 0.015 0.985 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.145 0.855 36 H 0.119 0.881 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.606 0.705 -3.289 11.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.186 4.186 3 C 0.050 3.950 4 H 0.093 0.907 5 C -0.228 4.228 6 O -0.277 6.277 7 N -0.159 5.159 8 C -0.011 4.011 9 C -0.174 4.174 10 C -0.070 4.070 11 C -0.210 4.210 12 C -0.086 4.086 13 C -0.268 4.268 14 C 0.071 3.929 15 O -0.127 6.127 16 C -0.488 4.488 17 H 0.118 0.882 18 C -0.216 4.216 19 N -0.553 5.553 20 Si 0.833 3.167 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.178 1.178 24 H 0.146 0.854 25 H 0.124 0.876 26 H 0.132 0.868 27 H 0.054 0.946 28 H 0.108 0.892 29 H 0.069 0.931 30 H 0.142 0.858 31 H 0.120 0.880 32 H 0.033 0.967 33 H 0.166 0.834 34 H 0.171 0.829 35 H 0.163 0.837 36 H 0.136 0.864 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.063 0.212 -3.497 11.604 hybrid contribution 2.033 0.134 1.200 2.365 sum -9.030 0.346 -2.297 9.323 Atomic orbital electron populations 1.24142 0.94671 1.03599 0.96407 1.22671 0.96322 0.96455 1.03146 1.21261 0.91904 0.97326 0.84512 0.90652 1.22276 1.00414 1.01192 0.98957 1.90747 1.71701 1.18338 1.46909 1.67043 1.47287 0.95665 1.05875 1.20575 0.94381 0.93861 0.92318 1.18904 1.00898 0.95561 1.02057 1.21014 0.96733 0.95257 0.94036 1.21181 1.01318 0.94848 1.03628 1.21234 0.94042 1.00095 0.93188 1.21305 1.06011 0.95449 1.04012 1.19773 0.92165 0.92579 0.88432 1.83929 1.41127 1.44015 1.43665 1.21769 1.06100 0.98466 1.22498 0.88246 1.26459 1.01134 0.97211 0.96780 1.70183 1.39741 1.14623 1.30710 0.84652 0.75809 0.77426 0.78784 1.18900 1.19936 1.17766 0.85436 0.87627 0.86826 0.94613 0.89189 0.93078 0.85764 0.88046 0.96708 0.83369 0.82935 0.83711 0.86352 0.92091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.95 14.32 67.78 0.97 -1.98 16 2 C -0.17 -4.28 9.15 25.64 0.23 -4.04 16 3 C 0.11 3.48 3.32 29.85 0.10 3.58 16 4 H 0.08 2.32 7.74 -2.39 -0.02 2.30 16 5 C -0.17 -5.62 9.52 71.98 0.68 -4.93 16 6 O -0.27 -10.78 10.91 -50.17 -0.55 -11.33 16 7 N -0.49 -20.43 7.29 -190.00 -1.38 -21.82 16 8 C 0.12 4.93 6.02 85.56 0.51 5.45 16 9 C -0.17 -7.16 5.41 -19.74 -0.11 -7.27 16 10 C -0.05 -1.71 9.66 22.25 0.22 -1.49 16 11 C -0.19 -5.65 10.04 22.30 0.22 -5.43 16 12 C -0.07 -2.22 10.04 22.25 0.22 -2.00 16 13 C -0.25 -10.55 9.17 22.39 0.21 -10.34 16 14 C 0.12 5.87 6.62 22.58 0.15 6.02 16 15 O -0.22 -12.75 8.95 -22.86 -0.20 -12.96 16 16 C -0.41 -23.43 9.49 67.92 0.64 -22.78 16 17 H 0.10 5.22 5.20 -2.91 -0.02 5.21 16 18 C -0.02 -0.99 5.49 84.83 0.47 -0.53 16 19 N -0.91 -55.32 13.67 21.61 0.30 -55.03 16 20 Si 1.01 42.60 29.55 68.60 2.03 44.62 16 21 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 24 H 0.13 1.83 8.06 -2.91 -0.02 1.80 16 25 H 0.11 1.91 7.83 -2.91 -0.02 1.89 16 26 H 0.11 2.84 8.06 -2.91 -0.02 2.81 16 27 H 0.03 1.35 7.73 -2.39 -0.02 1.33 16 28 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.33 15.21 8.42 -89.69 -0.75 14.46 16 31 H 0.10 3.67 8.00 -2.39 -0.02 3.65 16 32 H 0.01 0.73 7.86 -2.38 -0.02 0.71 16 33 H 0.15 3.88 8.04 -2.92 -0.02 3.86 16 34 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 35 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 36 H 0.12 5.12 5.64 -2.91 -0.02 5.11 16 37 H 0.27 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -68.42 323.22 5.02 -63.40 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: 0.31 Total: 38.85 kcal Atomic # 6 Polarization: -50.27 SS G_CDS: 4.52 Total: -45.74 kcal Atomic # 7 Polarization: -75.76 SS G_CDS: -1.09 Total: -76.84 kcal Atomic # 8 Polarization: -23.54 SS G_CDS: -0.75 Total: -24.29 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Total: -68.42 5.02 -63.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000400942098.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.846 kcal (2) G-P(sol) polarization free energy of solvation -68.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds